Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012666

Physical Location & Seq

Genomic Coordinates Forward (+)

14969651 .. 14971219

Gene Structure 1569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G232700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCATGCTTTGTGGGTGTCTTTGAAGGACAACGTCAGGTGCAATGGGAACAAGGTGGCAGATGTAGTTGGCCGGGCATCTGAAATATGTAACAGAAGAAACAGCAGTTCAGGAAAGGCAAATTCTGGTGGTGAAATTGTTCATGGCAAAGAGACTCCGGCCCGAGAATTGATGCACCGGGGAAGCTTCACACAAGCACAGCTATATGAGCTAGACATTGGACACCCATCAAGGAATGTCATTGAGATGATTGTCCGAAGAGCAACGGCAAATCCATCAGAGCCATCAAACAGGATTAAAAGGGTCCTGAGGGTGCAGAACTCCATATATACGCTTGAAAGGTTTGAGAAGTACAGAGAGATGGTAAAGAAGATGGCCAAACAGAGATATATGAGGCATCCAAGAAGCACAGTAGATGGAAACGAGCTGTTGAGGTTCTATGGCACAACGGTAGCCTGCTGCAGTGGCAAGTCGAAGCGAGTCTCTGAGCTTTGTAAGGCTCCAAATTGTCAAGTTTGCAGGATAATTCAATCAAACTTTTACACAGAATATAGCTTGAGCAATGAGATTCAACTGAGTACAAGTAGCGAAAAATTCAGTGAAAACAGCATTATCATCACAAGGAGGAACAAGATAAAAAGGGCTGTAATAGTTTGCCGGACAATTGCAGGGAGCATGGTTAATATGACAGACAAGGAATATGAAGAGTCTGATTCAATTGAAAGCCAAAAGCTGCTTTCCACTTCAGAATATTTGATAGTGAGGAATCCCTCTGCAGTACTTCCCTGTTTTGTCGTAGTTTTCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

270

Amino Acids

30.54

Weight (kDa)

9.56

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012666)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G232700_v2.0.a1 Prupe.4G232900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0042611
rosa_laevigata	RLG00000034143
rosa_multiflora	Rmu_sc0004704.1_g000006 Rmu_sc0012301.1_g000001 Rmu_sc0012301.1_g000008
rosa_roxburghii	Rroxscaffold_1G00038030 Rroxscaffold_1G00038050
rosa_rugosa	Rorug05G0203200
rosa_samantha	Rh5AG288000 Rh5AG288200 Rh5AG288500 Rh5BG292400 Rh5CG324800 Rh5DG302200 Rh5DG302300
rosa_wichuraiana	Rw5G026740 Rw5G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	70, 375
AcsI	RAATTY	2 cut(s)	121, 593
AcuI	CTGAAG	1 cut(s)	729
AfaI	GTAC	3 cut(s)	353, 580, 780
AgsI	TTSAA	6 cut(s)	25, 338, 530, 572, 717, 722
AluBI	AGCT	7 cut(s)	186, 202, 211, 427, 490, 555, 733
AluI	AGCT	7 cut(s)	186, 202, 211, 427, 490, 555, 733
Alw26I	GTCTC	2 cut(s)	146, 487
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	3 cut(s)	70, 159, 375
ApeKI	GCWGC	2 cut(s)	459, 733
ApoI	RAATTY	2 cut(s)	121, 593
Asp700I	GAANNNNTTC	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	160, 304
AsuC2I	CCSGG	2 cut(s)	74, 179
AsuHPI	GGTGA	2 cut(s)	143, 796
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	304
AxyI	CCTNAGG	1 cut(s)	308
BalI	TGGCCA	1 cut(s)	377
BbvI	GCAGC	2 cut(s)	446, 720
BccI	CCATC	6 cut(s)	235, 283, 292, 355, 367, 410
BceAI	ACGGC	1 cut(s)	282
BcnI	CCSGG	2 cut(s)	74, 179
BcoDI	GTCTC	2 cut(s)	146, 487
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	2 cut(s)	460, 774
BisI	GCNGC	2 cut(s)	460, 734
BlsI	GCNGC	2 cut(s)	461, 735
BmcAI	AGTACT	1 cut(s)	780
Bme1390I	CCNGG	2 cut(s)	74, 179
Bme18I	GGWCC	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	160, 304
BmiI	GGNNCC	2 cut(s)	305, 501
BmrFI	CCNGG	2 cut(s)	74, 179
BmsI	GCATC	3 cut(s)	86, 162, 406
BpuEI	CTTGAG	1 cut(s)	577
BpuMI	CCSGG	2 cut(s)	74, 179
BsaJI	CCNNGG	1 cut(s)	178
Bse21I	CCTNAGG	1 cut(s)	308
Bse3DI	GCAATG	2 cut(s)	49, 568
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	397
BseMI	GCAATG	2 cut(s)	49, 568
BseMII	CTCAG	3 cut(s)	299, 477, 566
BseXI	GCAGC	2 cut(s)	446, 720
BsgI	GTGCAG	1 cut(s)	335
BshFI	GGCC	3 cut(s)	72, 161, 377
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	4 cut(s)	73, 158, 178, 658
BsmAI	GTCTC	2 cut(s)	146, 487
BsnI	GGCC	3 cut(s)	72, 161, 377
BsoBI	CYCGRG	1 cut(s)	162
BspANI	GGCC	3 cut(s)	72, 161, 377
BspCNI	CTCAG	3 cut(s)	300, 478, 567
BspLI	GGNNCC	2 cut(s)	305, 501
BspMAI	CTGCAG	2 cut(s)	464, 778
BspQI	GCTCTTC	1 cut(s)	253
BsrDI	GCAATG	2 cut(s)	49, 568
BssECI	CCNNGG	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	412, 451
Bst6I	CTCTTC	2 cut(s)	253, 699
BstC8I	GCNNGC	2 cut(s)	6, 457
BstDEI	CTNAG	3 cut(s)	308, 486, 575
BstF5I	GGATG	1 cut(s)	397
BstMAI	GTCTC	2 cut(s)	146, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 465
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	72, 177
BstSFI	CTRYAG	2 cut(s)	460, 774
BstV1I	GCAGC	2 cut(s)	446, 720
Bsu36I	CCTNAGG	1 cut(s)	308
BsuRI	GGCC	3 cut(s)	72, 161, 377
BtsCI	GGATG	1 cut(s)	397
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	2 cut(s)	469, 604
Cac8I	GCNNGC	2 cut(s)	6, 457
Cfr13I	GGNCC	2 cut(s)	160, 304
Csp6I	GTAC	3 cut(s)	352, 579, 779
CviAII	CATG	3 cut(s)	5, 143, 676
CviQI	GTAC	3 cut(s)	352, 579, 779
DdeI	CTNAG	3 cut(s)	308, 486, 575
EaeI	YGGCCR	2 cut(s)	70, 375
Eam1104I	CTCTTC	2 cut(s)	253, 699
EarI	CTCTTC	2 cut(s)	253, 699
Eco47I	GGWCC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	729
Eco81I	CCTNAGG	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	304
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	8, 146, 679
FatI	CATG	3 cut(s)	4, 142, 675
Fnu4HI	GCNGC	2 cut(s)	460, 734
FokI	GGATG	1 cut(s)	384
Fsp4HI	GCNGC	2 cut(s)	460, 734
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	2 cut(s)	460, 734
HaeIII	GGCC	3 cut(s)	72, 161, 377
HapII	CCGG	4 cut(s)	73, 158, 178, 658
Hin1II	CATG	3 cut(s)	8, 146, 679
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	6 cut(s)	154, 480, 568, 707, 713, 766
HpaII	CCGG	4 cut(s)	73, 158, 178, 658
HphI	GGTGA	2 cut(s)	143, 796
Hpy188I	TCNGA	6 cut(s)	82, 257, 280, 487, 712, 748
Hpy188III	TCNNGA	2 cut(s)	111, 307
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	412, 451
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	8 cut(s)	4, 42, 175, 316, 462, 519, 668, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 465
HpyF3I	CTNAG	3 cut(s)	308, 486, 575
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	8, 146, 679
LguI	GCTCTTC	1 cut(s)	253
LmnI	GCTCC	2 cut(s)	505, 672
Lsp1109I	GCAGC	2 cut(s)	446, 720
LweI	GCATC	3 cut(s)	86, 162, 406
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	89
MboII	GAAGA	4 cut(s)	108, 270, 382, 716
MfeI	CAATTG	2 cut(s)	663, 717
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	8 cut(s)	121, 135, 167, 505, 525, 593, 663, 717
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	3 cut(s)	148, 489, 716
MnlI	CCTC	6 cut(s)	303, 387, 426, 618, 756, 781
Mox20I	TGGCCA	1 cut(s)	377
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	2 cut(s)	297, 681
MslI	CAYNNNNRTG	1 cut(s)	245
Msp20I	TGGCCA	1 cut(s)	377
MspI	CCGG	4 cut(s)	73, 158, 178, 658
MspR9I	CCNGG	2 cut(s)	74, 179
MunI	CAATTG	2 cut(s)	663, 717
MwoI	GCNNNNNNNGC	2 cut(s)	208, 465
NciI	CCSGG	2 cut(s)	74, 179
NlaIII	CATG	3 cut(s)	8, 146, 679
NlaIV	GGNNCC	2 cut(s)	305, 501
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	3 cut(s)	568, 713, 766
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	461, 735
PleI	GAGTC	3 cut(s)	148, 488, 715
PpsI	GAGTC	3 cut(s)	148, 488, 715
PpuMI	RGGWCCY	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	305, 501
PspPI	GGNCC	2 cut(s)	160, 304
PspPPI	RGGWCCY	1 cut(s)	304
PstI	CTGCAG	2 cut(s)	464, 778
PsyI	GACNNNGTC	1 cut(s)	32
RsaI	GTAC	3 cut(s)	353, 580, 780
RsaNI	GTAC	3 cut(s)	352, 579, 779
RseI	CAYNNNNRTG	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	297, 681
SatI	GCNGC	2 cut(s)	460, 734
Sau96I	GGNCC	2 cut(s)	160, 304
ScaI	AGTACT	1 cut(s)	780
SchI	GAGTC	3 cut(s)	148, 489, 716
ScrFI	CCNGG	2 cut(s)	74, 179
SfaNI	GCATC	3 cut(s)	86, 162, 406
SfcI	CTRYAG	2 cut(s)	460, 774
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	8 cut(s)	121, 135, 167, 505, 525, 593, 663, 717
SspI	AATATT	1 cut(s)	752
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	2 cut(s)	72, 177
TaaI	ACNGT	2 cut(s)	412, 451
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	473
TasI	AATT	8 cut(s)	121, 135, 167, 505, 525, 593, 663, 717
TatI	WGTACW	3 cut(s)	351, 578, 778
TfiI	GAWTC	3 cut(s)	568, 713, 766
Tru1I	TTAA	2 cut(s)	297, 681
Tru9I	TTAA	2 cut(s)	297, 681
TscAI	CASTG	2 cut(s)	469, 604
TseI	GCWGC	2 cut(s)	459, 733
TspDTI	ATGAA	2 cut(s)	131, 717
TspRI	CASTG	2 cut(s)	469, 604
Tth111I	GACNNNGTC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	304
XapI	RAATTY	2 cut(s)	121, 593
XceI	RCATGY	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	1 cut(s)	212
ZrmI	AGTACT	1 cut(s)	780
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.