Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0012666

Physical Location & Seq

Genomic Coordinates Forward (+)

38009400 .. 38010416

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG302200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCATGCAATGTGGGTATCATTGAATGAGAATGTCAAGTGTGGAACCAAGCTTGCAGATGTTATTGGCTTGCGAGAAAAATGTGACAGAAGAAGTAAGAACTCCAGAAAAACGAGTTTGGATGGTGAACTTGTACTTGCTCATGGCAAAGAGACCCCATTCCGCGAACCGATATGCCGTTCAAGCTACACACAGGCACAGCTCTTTGAGCTTAACATCAGGGACGTATCAAGGGACATCATTGAGATGATTGTTCGAAAAGCATCAATGAATCCTTCAAAGCCATCAGGCAGGATCAAAAGTGTCTTGAGGGTGAATAACTCCATAGAAACACTTGAAAGGTTTGAGAAGTACAGAGAGAAGGTAAAGAAGATGGCCAAAGAGAGATATATGAAGTACCCAAGAAGCACAGTAGATGGAAATGAGCTGATGAGATTCTATAACACAACAATGACCTGTTGCAATGGAGAGTCAAGGAGAGGCCCCGAGCTATGTAATGATCCAACTTGTCGAGTTTGCAGGTTAATTAAGTCGAACTTCGACACAGAATATGTATTGGAGAATGGGATTCAGTTAAGTACAAGTAGTGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

22.89

Weight (kDa)

9.3

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012666)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G232700_v2.0.a1 Prupe.4G232900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0042611
rosa_laevigata	RLG00000034143
rosa_multiflora	Rmu_sc0004704.1_g000006 Rmu_sc0012301.1_g000001 Rmu_sc0012301.1_g000008
rosa_roxburghii	Rroxscaffold_1G00038030 Rroxscaffold_1G00038050
rosa_rugosa	Rorug05G0203200
rosa_samantha	Rh5AG288000 Rh5AG288200 Rh5AG288500 Rh5BG292400 Rh5CG324800 Rh5DG302200 Rh5DG302300
rosa_wichuraiana	Rw5G026740 Rw5G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	510
AccII	CGCG	1 cut(s)	165
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	2 cut(s)	302, 494
AcoI	YGGCCR	1 cut(s)	375
AfaI	GTAC	4 cut(s)	135, 353, 398, 580
AgsI	TTSAA	4 cut(s)	25, 183, 279, 338
AluBI	AGCT	6 cut(s)	52, 186, 202, 211, 427, 490
AluI	AGCT	6 cut(s)	52, 186, 202, 211, 427, 490
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	302, 494
Ama87I	CYCGRG	1 cut(s)	485
AoxI	GGCC	2 cut(s)	375, 481
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	2 cut(s)	137, 325
AsuII	TTCGAA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	485
BalI	TGGCCA	1 cut(s)	377
BccI	CCATC	4 cut(s)	116, 292, 367, 410
BceAI	ACGGC	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	510
BmeT110I	CYCGRG	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	2 cut(s)	46, 484
BmsI	GCATC	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	88
Bpu14I	TTCGAA	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	328
BsaI	GGTCTC	1 cut(s)	146
Bse3DI	GCAATG	2 cut(s)	15, 469
BseGI	GGATG	1 cut(s)	127
BseMI	GCAATG	2 cut(s)	15, 469
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	2 cut(s)	377, 483
BsiHKCI	CYCGRG	1 cut(s)	485
BslFI	GGGAC	2 cut(s)	236, 248
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	236, 248
BsnI	GGCC	2 cut(s)	377, 483
Bso31I	GGTCTC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	485
Bsp119I	TTCGAA	1 cut(s)	256
Bsp143I	GATC	2 cut(s)	294, 499
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	2 cut(s)	377, 483
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	46, 484
BspMI	ACCTGC	1 cut(s)	510
BspPI	GGATC	2 cut(s)	302, 494
BspT104I	TTCGAA	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	146
BsrDI	GCAATG	2 cut(s)	15, 469
BssMI	GATC	2 cut(s)	294, 499
Bst4CI	ACNGT	1 cut(s)	412
BstBI	TTCGAA	1 cut(s)	256
BstC8I	GCNNGC	3 cut(s)	6, 54, 71
BstF5I	GGATG	1 cut(s)	127
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	2 cut(s)	297, 502
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	294, 499
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 208
BstNSI	RCATGY	1 cut(s)	8
BstUI	CGCG	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	377, 483
BtsCI	GGATG	1 cut(s)	127
BveI	ACCTGC	1 cut(s)	510
Cac8I	GCNNGC	3 cut(s)	6, 54, 71
Cfr13I	GGNCC	1 cut(s)	482
Csp6I	GTAC	4 cut(s)	134, 352, 397, 579
CviAII	CATG	2 cut(s)	5, 143
CviQI	GTAC	4 cut(s)	134, 352, 397, 579
DpnI	GATC	2 cut(s)	296, 501
DpnII	GATC	2 cut(s)	294, 499
EaeI	YGGCCR	1 cut(s)	375
Eco31I	GGTCTC	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	482
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	8, 146
FaiI	YATR	9 cut(s)	6, 144, 175, 326, 390, 392, 441, 493, 552
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	2 cut(s)	236, 248
FatI	CATG	2 cut(s)	4, 142
FokI	GGATG	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	377, 483
Hin1II	CATG	2 cut(s)	8, 146
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	4 cut(s)	271, 435, 470, 568
HphI	GGTGA	2 cut(s)	137, 325
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188III	TCNNGA	2 cut(s)	105, 307
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	285, 355
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	5 cut(s)	4, 8, 56, 462, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 208
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	8, 146
Kzo9I	GATC	2 cut(s)	294, 499
LpnPI	CCDG	7 cut(s)	118, 179, 205, 273, 277, 469, 505
LweI	GCATC	1 cut(s)	272
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	2 cut(s)	296, 501
MboI	GATC	2 cut(s)	294, 499
MboII	GAAGA	2 cut(s)	102, 382
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	1 cut(s)	525
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	527
MnlI	CCTC	2 cut(s)	303, 473
Mox20I	TGGCCA	1 cut(s)	377
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	4 cut(s)	213, 524, 528, 575
MslI	CAYNNNNRTG	2 cut(s)	245, 449
Msp20I	TGGCCA	1 cut(s)	377
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	183, 208
NdeII	GATC	2 cut(s)	294, 499
NlaIII	CATG	2 cut(s)	8, 146
NlaIV	GGNNCC	2 cut(s)	46, 484
NmuCI	GTSAC	1 cut(s)	83
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
NspV	TTCGAA	1 cut(s)	256
PacI	TTAATTAA	1 cut(s)	528
PaeI	GCATGC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	271, 435, 568
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PspN4I	GGNNCC	2 cut(s)	46, 484
PspPI	GGNCC	1 cut(s)	482
RsaI	GTAC	4 cut(s)	135, 353, 398, 580
RsaNI	GTAC	4 cut(s)	134, 352, 397, 579
RseI	CAYNNNNRTG	2 cut(s)	245, 449
SaqAI	TTAA	4 cut(s)	213, 524, 528, 575
Sau3AI	GATC	2 cut(s)	294, 499
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	1 cut(s)	479
SfaNI	GCATC	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	256
SmiMI	CAYNNNNRTG	2 cut(s)	245, 449
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	1 cut(s)	525
SsiI	CCGC	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	4 cut(s)	256, 511, 533, 540
TasI	AATT	1 cut(s)	525
TatI	WGTACW	3 cut(s)	133, 351, 578
TfiI	GAWTC	3 cut(s)	271, 435, 568
Tru1I	TTAA	4 cut(s)	213, 524, 528, 575
Tru9I	TTAA	4 cut(s)	213, 524, 528, 575
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	284, 407
XceI	RCATGY	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.