Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012666

Physical Location & Seq

Genomic Coordinates Forward (+)

39078476 .. 39080286

Gene Structure 1811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG288200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGCATGCAATGTGGGTATCATTGATTGAGAATGTCAAGTGTAGAAGCAAGCTTGCAAATGTTATTGGCTTGCGAGAAAGATGTGACAGAAGAAGTAAGAACTCCAGAAAAGCGAGTTTGGATGGTGAACTTGTACTTGCTCATGGCAAAGAGACCCCAGAAGTCTCGCTCACTCGCTCAGAAGTCTCAAACAGAGAGATGCATGCAATGTGGGTATCATTGAAGGAGAACGTCAAGTGTGGAAGCAAGCTTGCAGATGTTATTGGCTTGCGAGAAAAATGTGACAGAAGAAGTAAGAACTCCAGAAAAGTGAGTTTGGATGGTGAACTTGTACTTGCTCATGGCAAAGAGACCCCAGAAGTCTCGCTCACTCGCTCAGAAGTCTCAAACAGAGAGATGCATGCAATGTGGGTATCATTGAAGGAGAACGTCAAGTGTGGAAGCAAGCTTGCAGATGTTATTGGCTTGCGAGAAAAATGTGACAGAAGAAGTAAGAACTCCAGAAAAGCGAGTTTGGATGGTGAACTTGTATTTGCTCATGGCAAAGAGACCCCAGAAGTCTCGCTCACTCGCTCAGAAGTCCCAAACAGAGAGATGCATGCAATGTGGGTATCATTGAAGGAGAACGTCAAGTGTGGAAGCAAGCTTGCAGATGTTATTGGCTTGCGAGAAAAATGTGACAGAAGAAGTAAGAACTCCAGAAAAGCGAGTTTGGATGGTGAACTTGTATTTGCTCATGGCAAAGAGACCCCATTCCGCGAACCGATATGCCGTTCAAGCTACACACAGGCACAGCTCTTTGAGCTTAACGTCGGGGACGTATCAAGGAACATCATTGAGATGATTGTTCGAAAAGCATCAATGAATCCTTCAAAGCCATCAGGCAGGATCAAAAGTGTCTTGAGGGTGAATAACTCCATAGAAACACTTGAAAGGTTTGAGAAGTACAGAGAGAAGGTAAAGAAGATGGCCAAAGAGAGATACATGAGACACCCAAGAAGCACAGTAGATGGAAATGAGCTGATGAGATTCTATGGCACAACAATGACCTGTTGCAATGGAGAGTCAAGGAGAGAGCCCGAGCTTTGTAATGGTCCAACTTGTCGAGTTTGCAGGTTAATTAAGTCGAACTTCGACACAGAATATGTATTGGAGAATGGGATTCAGTTAAGTACAAGTAGTGAAAACACCATTGCCGTTGCGAGGGCAGCCAAGGCAAAGAGGGCTGTAATAGTTTGCAGGACAATTGCAGGGAGCATTATTAATGTGGAGGACAAGGAATATGACGAGTCTGATTCAATTGGAAACCGAAATTTGCATTCCACCACCACAGAATATCTTTTCGTGCAGAATCCCAGTGCTGTACTTCCCTGTTTTGTAGTAGTTTTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

464

Amino Acids

52.39

Weight (kDa)

9.38

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012666)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G232700_v2.0.a1 Prupe.4G232900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0042611
rosa_laevigata	RLG00000034143
rosa_multiflora	Rmu_sc0004704.1_g000006 Rmu_sc0012301.1_g000001 Rmu_sc0012301.1_g000008
rosa_roxburghii	Rroxscaffold_1G00038030 Rroxscaffold_1G00038050
rosa_rugosa	Rorug05G0203200
rosa_samantha	Rh5AG288000 Rh5AG288200 Rh5AG288500 Rh5BG292400 Rh5CG324800 Rh5DG302200 Rh5DG302300
rosa_wichuraiana	Rw5G026740 Rw5G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1104
AccII	CGCG	1 cut(s)	759
AciI	CCGC	1 cut(s)	757
AclWI	GGATC	1 cut(s)	896
AcoI	YGGCCR	1 cut(s)	969
AcsI	RAATTY	1 cut(s)	1312
AfaI	GTAC	5 cut(s)	135, 333, 947, 1174, 1365
AfiI	CCNNNNNNNGG	1 cut(s)	1203
AgsI	TTSAA	7 cut(s)	223, 421, 619, 777, 873, 932, 1299
AlwI	GGATC	1 cut(s)	896
Ama87I	CYCGRG	1 cut(s)	1079
AoxI	GGCC	1 cut(s)	969
ApeKI	GCWGC	1 cut(s)	1208
ApoI	RAATTY	1 cut(s)	1312
AseI	ATTAAT	1 cut(s)	1263
AspS9I	GGNCC	1 cut(s)	1094
AsuHPI	GGTGA	5 cut(s)	137, 335, 533, 731, 919
AsuII	TTCGAA	1 cut(s)	850
AvaI	CYCGRG	1 cut(s)	1079
AvaII	GGWCC	1 cut(s)	1094
BalI	TGGCCA	1 cut(s)	971
BanII	GRGCYC	1 cut(s)	1080
BbvI	GCAGC	1 cut(s)	1220
BccI	CCATC	7 cut(s)	116, 314, 512, 710, 886, 961, 1004
BceAI	ACGGC	2 cut(s)	756, 1181
BfuAI	ACCTGC	1 cut(s)	1104
BisI	GCNGC	1 cut(s)	1209
BlsI	GCNGC	1 cut(s)	1210
Bme18I	GGWCC	1 cut(s)	1094
BmeT110I	CYCGRG	1 cut(s)	1079
BmgT120I	GGNCC	1 cut(s)	1094
BmrI	ACTGGG	1 cut(s)	1350
BmsI	GCATC	4 cut(s)	189, 387, 585, 866
BmuI	ACTGGG	1 cut(s)	1350
BpmI	CTGGAG	4 cut(s)	88, 286, 484, 682
Bpu14I	TTCGAA	1 cut(s)	850
BpuEI	CTTGAG	1 cut(s)	922
BsaI	GGTCTC	4 cut(s)	146, 344, 542, 740
BsaJI	CCNNGG	1 cut(s)	1212
Bsc4I	CCNNNNNNNGG	1 cut(s)	1203
Bse1I	ACTGG	1 cut(s)	1356
Bse3DI	GCAATG	6 cut(s)	15, 213, 411, 609, 1063, 1191
BseDI	CCNNGG	1 cut(s)	1212
BseGI	GGATG	4 cut(s)	127, 325, 523, 721
BseLI	CCNNNNNNNGG	1 cut(s)	1203
BseMI	GCAATG	6 cut(s)	15, 213, 411, 609, 1063, 1191
BseMII	CTCAG	3 cut(s)	192, 390, 588
BseNI	ACTGG	1 cut(s)	1356
BseXI	GCAGC	1 cut(s)	1220
BsgI	GTGCAG	1 cut(s)	1367
Bsh1236I	CGCG	1 cut(s)	759
BshFI	GGCC	1 cut(s)	971
BsiHKCI	CYCGRG	1 cut(s)	1079
BslFI	GGGAC	2 cut(s)	566, 830
BslI	CCNNNNNNNGG	1 cut(s)	1203
BsmFI	GGGAC	2 cut(s)	566, 830
BsmI	GAATGC	1 cut(s)	1318
BsnI	GGCC	1 cut(s)	971
Bso31I	GGTCTC	4 cut(s)	146, 344, 542, 740
BsoBI	CYCGRG	1 cut(s)	1079
Bsp119I	TTCGAA	1 cut(s)	850
Bsp1286I	GDGCHC	1 cut(s)	1080
Bsp143I	GATC	1 cut(s)	888
BspACI	CCGC	1 cut(s)	757
BspANI	GGCC	1 cut(s)	971
BspCNI	CTCAG	3 cut(s)	191, 389, 587
BspFNI	CGCG	1 cut(s)	759
BspMI	ACCTGC	1 cut(s)	1104
BspPI	GGATC	1 cut(s)	896
BspT104I	TTCGAA	1 cut(s)	850
BspTNI	GGTCTC	4 cut(s)	146, 344, 542, 740
BsrDI	GCAATG	6 cut(s)	15, 213, 411, 609, 1063, 1191
BsrI	ACTGG	1 cut(s)	1356
BssECI	CCNNGG	1 cut(s)	1212
BssMI	GATC	1 cut(s)	888
BssT1I	CCWWGG	1 cut(s)	1212
Bst4CI	ACNGT	1 cut(s)	1006
BstBI	TTCGAA	1 cut(s)	850
BstDEI	CTNAG	3 cut(s)	178, 376, 574
BstF5I	GGATG	4 cut(s)	127, 325, 523, 721
BstFNI	CGCG	1 cut(s)	759
BstKTI	GATC	1 cut(s)	891
BstMBI	GATC	1 cut(s)	888
BstMWI	GCNNNNNNNGC	5 cut(s)	777, 802, 1208, 1214, 1223
BstNSI	RCATGY	4 cut(s)	8, 206, 404, 602
BstUI	CGCG	1 cut(s)	759
BstV1I	GCAGC	1 cut(s)	1220
BsuRI	GGCC	1 cut(s)	971
BtsCI	GGATG	4 cut(s)	127, 325, 523, 721
BtsIMutI	CAGTG	1 cut(s)	1363
BveI	ACCTGC	1 cut(s)	1104
Cfr13I	GGNCC	1 cut(s)	1094
Csp6I	GTAC	5 cut(s)	134, 332, 946, 1173, 1364
CviAII	CATG	9 cut(s)	5, 143, 203, 341, 401, 539, 599, 737, 985
CviQI	GTAC	5 cut(s)	134, 332, 946, 1173, 1364
DdeI	CTNAG	3 cut(s)	178, 376, 574
DpnI	GATC	1 cut(s)	890
DpnII	GATC	1 cut(s)	888
EaeI	YGGCCR	1 cut(s)	969
Eco130I	CCWWGG	1 cut(s)	1212
Eco24I	GRGCYC	1 cut(s)	1080
Eco31I	GGTCTC	4 cut(s)	146, 344, 542, 740
Eco47I	GGWCC	1 cut(s)	1094
Eco88I	CYCGRG	1 cut(s)	1079
EcoT14I	CCWWGG	1 cut(s)	1212
EcoT22I	ATGCAT	4 cut(s)	6, 204, 402, 600
EcoT38I	GRGCYC	1 cut(s)	1080
ErhI	CCWWGG	1 cut(s)	1212
FaeI	CATG	9 cut(s)	8, 146, 206, 344, 404, 542, 602, 740, 988
FalI	AAGNNNNNCTT	2 cut(s)	1115, 1147
FaqI	GGGAC	2 cut(s)	566, 830
FatI	CATG	9 cut(s)	4, 142, 202, 340, 400, 538, 598, 736, 984
Fnu4HI	GCNGC	1 cut(s)	1209
FokI	GGATG	4 cut(s)	134, 332, 530, 728
FriOI	GRGCYC	1 cut(s)	1080
Fsp4HI	GCNGC	1 cut(s)	1209
GluI	GCNGC	1 cut(s)	1209
GsuI	CTGGAG	4 cut(s)	88, 286, 484, 682
HaeIII	GGCC	1 cut(s)	971
Hin1II	CATG	9 cut(s)	8, 146, 206, 344, 404, 542, 602, 740, 988
HindIII	AAGCTT	4 cut(s)	50, 248, 446, 644
HinfI	GANTC	7 cut(s)	865, 1029, 1064, 1162, 1289, 1295, 1351
HphI	GGTGA	5 cut(s)	137, 335, 533, 731, 919
Hpy166II	GTNNAC	4 cut(s)	128, 326, 524, 722
Hpy188I	TCNGA	4 cut(s)	181, 379, 577, 1294
Hpy188III	TCNNGA	5 cut(s)	105, 303, 501, 699, 901
Hpy8I	GTNNAC	4 cut(s)	128, 326, 524, 722
Hpy99I	CGWCG	1 cut(s)	815
HpyAV	CCTTC	5 cut(s)	217, 415, 613, 879, 949
HpyCH4III	ACNGT	1 cut(s)	1006
HpyCH4IV	ACGT	5 cut(s)	231, 429, 627, 810, 819
HpyF10VI	GCNNNNNNNGC	5 cut(s)	777, 802, 1208, 1214, 1223
HpyF3I	CTNAG	3 cut(s)	178, 376, 574
HpySE526I	ACGT	5 cut(s)	231, 429, 627, 810, 819
Hsp92II	CATG	9 cut(s)	8, 146, 206, 344, 404, 542, 602, 740, 988
Kzo9I	GATC	1 cut(s)	888
LmnI	GCTCC	1 cut(s)	1254
Lsp1109I	GCAGC	1 cut(s)	1220
LweI	GCATC	4 cut(s)	189, 387, 585, 866
MaeII	ACGT	5 cut(s)	231, 429, 627, 810, 819
MaeIII	GTNAC	4 cut(s)	83, 281, 479, 677
MalI	GATC	1 cut(s)	890
MboI	GATC	1 cut(s)	888
MboII	GAAGA	5 cut(s)	102, 300, 498, 696, 976
MfeI	CAATTG	2 cut(s)	1245, 1299
MhlI	GDGCHC	1 cut(s)	1080
MlsI	TGGCCA	1 cut(s)	971
MluCI	AATT	4 cut(s)	1119, 1245, 1299, 1312
MluNI	TGGCCA	1 cut(s)	971
MlyI	GAGTC	2 cut(s)	1073, 1298
MmeI	TCCRAC	1 cut(s)	1121
MnlI	CCTC	4 cut(s)	897, 1197, 1215, 1264
Mox20I	TGGCCA	1 cut(s)	971
Mph1103I	ATGCAT	4 cut(s)	6, 204, 402, 600
MscI	TGGCCA	1 cut(s)	971
MseI	TTAA	5 cut(s)	807, 1118, 1122, 1169, 1263
MslI	CAYNNNNRTG	2 cut(s)	839, 1043
Msp20I	TGGCCA	1 cut(s)	971
MspA1I	CMGCKG	1 cut(s)	1392
MunI	CAATTG	2 cut(s)	1245, 1299
Mva1269I	GAATGC	1 cut(s)	1318
MvnI	CGCG	1 cut(s)	759
MwoI	GCNNNNNNNGC	5 cut(s)	777, 802, 1208, 1214, 1223
NdeII	GATC	1 cut(s)	888
NlaIII	CATG	9 cut(s)	8, 146, 206, 344, 404, 542, 602, 740, 988
NmuCI	GTSAC	4 cut(s)	83, 281, 479, 677
NsiI	ATGCAT	4 cut(s)	6, 204, 402, 600
NspI	RCATGY	4 cut(s)	8, 206, 404, 602
NspV	TTCGAA	1 cut(s)	850
PacI	TTAATTAA	1 cut(s)	1122
PaeI	GCATGC	4 cut(s)	8, 206, 404, 602
PcsI	WCGNNNNNNNCGW	1 cut(s)	816
PctI	GAATGC	1 cut(s)	1318
PfeI	GAWTC	5 cut(s)	865, 1029, 1162, 1295, 1351
PkrI	GCNGC	1 cut(s)	1210
PleI	GAGTC	2 cut(s)	1072, 1297
PpsI	GAGTC	2 cut(s)	1072, 1297
PshBI	ATTAAT	1 cut(s)	1263
PspPI	GGNCC	1 cut(s)	1094
PvuII	CAGCTG	1 cut(s)	1392
RsaI	GTAC	5 cut(s)	135, 333, 947, 1174, 1365
RsaNI	GTAC	5 cut(s)	134, 332, 946, 1173, 1364
RseI	CAYNNNNRTG	2 cut(s)	839, 1043
SaqAI	TTAA	5 cut(s)	807, 1118, 1122, 1169, 1263
SatI	GCNGC	1 cut(s)	1209
Sau3AI	GATC	1 cut(s)	888
Sau96I	GGNCC	1 cut(s)	1094
SchI	GAGTC	2 cut(s)	1073, 1298
SduI	GDGCHC	1 cut(s)	1080
SfaNI	GCATC	4 cut(s)	189, 387, 585, 866
SfuI	TTCGAA	1 cut(s)	850
SinI	GGWCC	1 cut(s)	1094
SmiMI	CAYNNNNRTG	2 cut(s)	839, 1043
SmlI	CTYRAG	1 cut(s)	901
SmoI	CTYRAG	1 cut(s)	901
SphI	GCATGC	4 cut(s)	8, 206, 404, 602
Sse9I	AATT	4 cut(s)	1119, 1245, 1299, 1312
SsiI	CCGC	1 cut(s)	757
StyI	CCWWGG	1 cut(s)	1212
TaaI	ACNGT	1 cut(s)	1006
TaiI	ACGT	5 cut(s)	234, 432, 630, 813, 822
TaqI	TCGA	4 cut(s)	850, 1105, 1127, 1134
TasI	AATT	4 cut(s)	1119, 1245, 1299, 1312
TatI	WGTACW	5 cut(s)	133, 331, 945, 1172, 1363
TfiI	GAWTC	5 cut(s)	865, 1029, 1162, 1295, 1351
Tru1I	TTAA	5 cut(s)	807, 1118, 1122, 1169, 1263
Tru9I	TTAA	5 cut(s)	807, 1118, 1122, 1169, 1263
TscAI	CASTG	1 cut(s)	1363
TseFI	GTSAC	4 cut(s)	83, 281, 479, 677
TseI	GCWGC	1 cut(s)	1208
Tsp45I	GTSAC	4 cut(s)	83, 281, 479, 677
TspDTI	ATGAA	1 cut(s)	878
TspRI	CASTG	1 cut(s)	1363
VpaK11BI	GGWCC	1 cut(s)	1094
VspI	ATTAAT	1 cut(s)	1263
XapI	RAATTY	1 cut(s)	1312
XceI	RCATGY	4 cut(s)	8, 206, 404, 602
Zsp2I	ATGCAT	4 cut(s)	6, 204, 402, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.