Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0012666

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG324800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGCATGCATTGTGGGTATCATTGAATGAGAATGTCAAGTGTGGAAGCAAGCTTGCAAATGTTATTGGCTTGCGAGAAAGATGTGACAGAAGAAGTAAGAATTCCAGAAAAGCGAGTTTGGATGGTGAACTTGTACTTGCTCATGGCAAAGAGACCCCAGAAGATTCGCTCACTCGCTCAGAATTCCCAAACAGAGAGATGCATGCAATGTGGGTATCATTGAAGGAGAACGTCAAGTGTGGAAGCAAGCTTGCAGATGTTATTGGCTTGCGAGAAAAATGTGACAGAAGAAGTAAGAACTCCAGAAAAGCGAGTTTGGATGGTGAACTTGTACTTGCTCATGGCAAACAGACCCCAGAAGTCTCGCTCACTCGCTCAGAAGTCTCAAACAGAGAGATGCATGCAATGTGGGTATCATTGAAGGAGAATGTCAAGTTTGGAAGCAAGCTTGCAGATGTTATTGGCTTGCGAGAAAAATGTGACAGAAGAAGTAAGAACTCCAGAAAAGCGAGTTTGGATGGTGAACTTGTACTTGCTCATGGCAAACAGACCCCATTCCGCGAACCGATATGCCGTTCAAGCTACACACAGGCACAGCTCTTTGAGCTTAACATCGGGGACGTATCAAGGAACATCATTGAGATGATTGTTCGAAAAGCATCAATGAATCCTTCAAAGCCATCAGGCAGGATCAAAAGTGTCTTGAGGGTGAATAACTCCATAGAAACACTTGAAAGGTTTGAGAAGTACAGAGAGAAGGTAAAGAAGATGGCCAAAGAGAGATACATGAGGCACCCAAGAAGCACAGTAGATGGAAATGAGCTGATGAGATTCTATGGCACAACAATGACCTGTTGCAATGGAGAGTCAAGGAGAGAGCCCGAGCTTTGTAATGGTCCAACTTGTCGAGTTTGCAGGTTAATTAAGTCGAACTTTGACACAGAATATATATTGAAGAATGGGATTCAGTTGAGTACAAGTAGTGAAAACACCATTGCCGTTACAAGGGCAACCAAGGCAAAGAGGGCTGTAATAGTTTGCAGGACAATTGCAGGGAGCATTATGAATGCGGATGACAAGGAATATGACGAGTCTGATTCAATTGGAAACCGAAATTTGCATTCCACCACCACAGAATATCTATTAGTGCAGAATCCCAGTGCTGTACTTCCCTGTTTTGTGATAGTTTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

398

Amino Acids

44.99

Weight (kDa)

9.48

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012666)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G232700_v2.0.a1 Prupe.4G232900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0042611
rosa_laevigata	RLG00000034143
rosa_multiflora	Rmu_sc0004704.1_g000006 Rmu_sc0012301.1_g000001 Rmu_sc0012301.1_g000008
rosa_roxburghii	Rroxscaffold_1G00038030 Rroxscaffold_1G00038050
rosa_rugosa	Rorug05G0203200
rosa_samantha	Rh5AG288000 Rh5AG288200 Rh5AG288500 Rh5BG292400 Rh5CG324800 Rh5DG302200 Rh5DG302300
rosa_wichuraiana	Rw5G026740 Rw5G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	906
AccB1I	GGYRCC	1 cut(s)	792
AccII	CGCG	1 cut(s)	561
AciI	CCGC	2 cut(s)	559, 1070
AclWI	GGATC	1 cut(s)	698
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	3 cut(s)	100, 182, 1114
AfaI	GTAC	6 cut(s)	135, 333, 531, 749, 976, 1167
AfiI	CCNNNNNNNGG	1 cut(s)	1005
AgsI	TTSAA	9 cut(s)	25, 223, 421, 579, 675, 734, 955, 1101, 1192
AluBI	AGCT	8 cut(s)	52, 250, 448, 582, 598, 607, 823, 886
AluI	AGCT	8 cut(s)	52, 250, 448, 582, 598, 607, 823, 886
Alw26I	GTCTC	3 cut(s)	146, 367, 388
AlwI	GGATC	1 cut(s)	698
Ama87I	CYCGRG	1 cut(s)	881
AoxI	GGCC	1 cut(s)	771
ApoI	RAATTY	3 cut(s)	100, 182, 1114
AspS9I	GGNCC	1 cut(s)	896
AsuHPI	GGTGA	4 cut(s)	137, 335, 533, 721
AsuII	TTCGAA	1 cut(s)	652
AvaI	CYCGRG	1 cut(s)	881
AvaII	GGWCC	1 cut(s)	896
BalI	TGGCCA	1 cut(s)	773
BanI	GGYRCC	1 cut(s)	792
BanII	GRGCYC	1 cut(s)	882
BccI	CCATC	6 cut(s)	116, 314, 512, 688, 763, 806
BceAI	ACGGC	2 cut(s)	558, 983
BcoDI	GTCTC	3 cut(s)	146, 367, 388
BfuAI	ACCTGC	1 cut(s)	906
Bme18I	GGWCC	1 cut(s)	896
BmeT110I	CYCGRG	1 cut(s)	881
BmgT120I	GGNCC	1 cut(s)	896
BmiI	GGNNCC	1 cut(s)	794
BmrI	ACTGGG	1 cut(s)	1152
BmsI	GCATC	3 cut(s)	189, 387, 668
BmuI	ACTGGG	1 cut(s)	1152
BpmI	CTGGAG	2 cut(s)	286, 484
Bpu14I	TTCGAA	1 cut(s)	652
BpuEI	CTTGAG	1 cut(s)	724
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	1014
Bsc4I	CCNNNNNNNGG	1 cut(s)	1005
Bse1I	ACTGG	1 cut(s)	1158
Bse3DI	GCAATG	4 cut(s)	213, 411, 865, 993
BseDI	CCNNGG	1 cut(s)	1014
BseGI	GGATG	4 cut(s)	127, 325, 523, 1078
BseLI	CCNNNNNNNGG	1 cut(s)	1005
BseMI	GCAATG	4 cut(s)	213, 411, 865, 993
BseMII	CTCAG	2 cut(s)	192, 390
BseNI	ACTGG	1 cut(s)	1158
BsgI	GTGCAG	1 cut(s)	1169
Bsh1236I	CGCG	1 cut(s)	561
BshFI	GGCC	1 cut(s)	773
BshNI	GGYRCC	1 cut(s)	792
BsiHKCI	CYCGRG	1 cut(s)	881
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	1 cut(s)	1005
BsmAI	GTCTC	3 cut(s)	146, 367, 388
BsmFI	GGGAC	1 cut(s)	632
BsmI	GAATGC	2 cut(s)	1072, 1120
BsnI	GGCC	1 cut(s)	773
Bso31I	GGTCTC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	881
Bsp119I	TTCGAA	1 cut(s)	652
Bsp1286I	GDGCHC	1 cut(s)	882
Bsp143I	GATC	1 cut(s)	690
BspACI	CCGC	2 cut(s)	559, 1070
BspANI	GGCC	1 cut(s)	773
BspCNI	CTCAG	2 cut(s)	191, 389
BspFNI	CGCG	1 cut(s)	561
BspLI	GGNNCC	1 cut(s)	794
BspMI	ACCTGC	1 cut(s)	906
BspPI	GGATC	1 cut(s)	698
BspT104I	TTCGAA	1 cut(s)	652
BspT107I	GGYRCC	1 cut(s)	792
BspTNI	GGTCTC	1 cut(s)	146
BsrDI	GCAATG	4 cut(s)	213, 411, 865, 993
BsrI	ACTGG	1 cut(s)	1158
BssECI	CCNNGG	1 cut(s)	1014
BssMI	GATC	1 cut(s)	690
BssT1I	CCWWGG	1 cut(s)	1014
Bst4CI	ACNGT	1 cut(s)	808
BstBI	TTCGAA	1 cut(s)	652
BstDEI	CTNAG	2 cut(s)	178, 376
BstF5I	GGATG	4 cut(s)	127, 325, 523, 1078
BstFNI	CGCG	1 cut(s)	561
BstKTI	GATC	1 cut(s)	693
BstMAI	GTCTC	3 cut(s)	146, 367, 388
BstMBI	GATC	1 cut(s)	690
BstMWI	GCNNNNNNNGC	4 cut(s)	579, 604, 1016, 1025
BstNSI	RCATGY	3 cut(s)	8, 206, 404
BstUI	CGCG	1 cut(s)	561
BsuRI	GGCC	1 cut(s)	773
BtsCI	GGATG	4 cut(s)	127, 325, 523, 1078
BtsIMutI	CAGTG	1 cut(s)	1165
BveI	ACCTGC	1 cut(s)	906
Cfr13I	GGNCC	1 cut(s)	896
Csp6I	GTAC	6 cut(s)	134, 332, 530, 748, 975, 1166
CviAII	CATG	7 cut(s)	5, 143, 203, 341, 401, 539, 787
CviQI	GTAC	6 cut(s)	134, 332, 530, 748, 975, 1166
DdeI	CTNAG	2 cut(s)	178, 376
DpnI	GATC	1 cut(s)	692
DpnII	GATC	1 cut(s)	690
EaeI	YGGCCR	1 cut(s)	771
Eco130I	CCWWGG	1 cut(s)	1014
Eco24I	GRGCYC	1 cut(s)	882
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	896
Eco88I	CYCGRG	1 cut(s)	881
EcoRI	GAATTC	2 cut(s)	100, 182
EcoT14I	CCWWGG	1 cut(s)	1014
EcoT22I	ATGCAT	4 cut(s)	6, 10, 204, 402
EcoT38I	GRGCYC	1 cut(s)	882
ErhI	CCWWGG	1 cut(s)	1014
FaeI	CATG	7 cut(s)	8, 146, 206, 344, 404, 542, 790
FalI	AAGNNNNNCTT	2 cut(s)	917, 949
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	7 cut(s)	4, 142, 202, 340, 400, 538, 786
FokI	GGATG	4 cut(s)	134, 332, 530, 1085
FriOI	GRGCYC	1 cut(s)	882
GsuI	CTGGAG	2 cut(s)	286, 484
HaeIII	GGCC	1 cut(s)	773
Hin1II	CATG	7 cut(s)	8, 146, 206, 344, 404, 542, 790
HindIII	AAGCTT	3 cut(s)	50, 248, 446
HinfI	GANTC	8 cut(s)	164, 667, 831, 866, 964, 1091, 1097, 1153
HphI	GGTGA	4 cut(s)	137, 335, 533, 721
Hpy166II	GTNNAC	3 cut(s)	128, 326, 524
Hpy188I	TCNGA	3 cut(s)	181, 379, 1096
Hpy188III	TCNNGA	4 cut(s)	105, 303, 501, 703
Hpy8I	GTNNAC	3 cut(s)	128, 326, 524
HpyAV	CCTTC	4 cut(s)	217, 415, 681, 751
HpyCH4III	ACNGT	1 cut(s)	808
HpyCH4IV	ACGT	2 cut(s)	231, 621
HpyF10VI	GCNNNNNNNGC	4 cut(s)	579, 604, 1016, 1025
HpyF3I	CTNAG	2 cut(s)	178, 376
HpySE526I	ACGT	2 cut(s)	231, 621
Hsp92II	CATG	7 cut(s)	8, 146, 206, 344, 404, 542, 790
Kzo9I	GATC	1 cut(s)	690
LmnI	GCTCC	1 cut(s)	1056
LweI	GCATC	3 cut(s)	189, 387, 668
MaeII	ACGT	2 cut(s)	231, 621
MaeIII	GTNAC	4 cut(s)	83, 281, 479, 1000
MalI	GATC	1 cut(s)	692
MboI	GATC	1 cut(s)	690
MboII	GAAGA	6 cut(s)	102, 173, 300, 498, 778, 967
MfeI	CAATTG	2 cut(s)	1047, 1101
MhlI	GDGCHC	1 cut(s)	882
MlsI	TGGCCA	1 cut(s)	773
MluCI	AATT	6 cut(s)	100, 182, 921, 1047, 1101, 1114
MluNI	TGGCCA	1 cut(s)	773
MlyI	GAGTC	2 cut(s)	875, 1100
MmeI	TCCRAC	1 cut(s)	923
MnlI	CCTC	3 cut(s)	699, 783, 1017
Mox20I	TGGCCA	1 cut(s)	773
Mph1103I	ATGCAT	4 cut(s)	6, 10, 204, 402
MscI	TGGCCA	1 cut(s)	773
MseI	TTAA	3 cut(s)	609, 920, 924
MslI	CAYNNNNRTG	2 cut(s)	641, 845
Msp20I	TGGCCA	1 cut(s)	773
MunI	CAATTG	2 cut(s)	1047, 1101
Mva1269I	GAATGC	2 cut(s)	1072, 1120
MvnI	CGCG	1 cut(s)	561
MwoI	GCNNNNNNNGC	4 cut(s)	579, 604, 1016, 1025
NdeII	GATC	1 cut(s)	690
NlaIII	CATG	7 cut(s)	8, 146, 206, 344, 404, 542, 790
NlaIV	GGNNCC	1 cut(s)	794
NmuCI	GTSAC	3 cut(s)	83, 281, 479
NsiI	ATGCAT	4 cut(s)	6, 10, 204, 402
NspI	RCATGY	3 cut(s)	8, 206, 404
NspV	TTCGAA	1 cut(s)	652
PacI	TTAATTAA	1 cut(s)	924
PaeI	GCATGC	3 cut(s)	8, 206, 404
PctI	GAATGC	2 cut(s)	1072, 1120
PfeI	GAWTC	6 cut(s)	164, 667, 831, 964, 1097, 1153
PleI	GAGTC	2 cut(s)	874, 1099
PpsI	GAGTC	2 cut(s)	874, 1099
PspN4I	GGNNCC	1 cut(s)	794
PspPI	GGNCC	1 cut(s)	896
RsaI	GTAC	6 cut(s)	135, 333, 531, 749, 976, 1167
RsaNI	GTAC	6 cut(s)	134, 332, 530, 748, 975, 1166
RseI	CAYNNNNRTG	2 cut(s)	641, 845
SaqAI	TTAA	3 cut(s)	609, 920, 924
Sau3AI	GATC	1 cut(s)	690
Sau96I	GGNCC	1 cut(s)	896
SchI	GAGTC	2 cut(s)	875, 1100
SduI	GDGCHC	1 cut(s)	882
SfaNI	GCATC	3 cut(s)	189, 387, 668
SfuI	TTCGAA	1 cut(s)	652
SinI	GGWCC	1 cut(s)	896
SmiMI	CAYNNNNRTG	2 cut(s)	641, 845
SmlI	CTYRAG	1 cut(s)	703
SmoI	CTYRAG	1 cut(s)	703
SphI	GCATGC	3 cut(s)	8, 206, 404
Sse9I	AATT	6 cut(s)	100, 182, 921, 1047, 1101, 1114
SsiI	CCGC	2 cut(s)	559, 1070
StyI	CCWWGG	1 cut(s)	1014
TaaI	ACNGT	1 cut(s)	808
TaiI	ACGT	2 cut(s)	234, 624
TaqI	TCGA	3 cut(s)	652, 907, 929
TasI	AATT	6 cut(s)	100, 182, 921, 1047, 1101, 1114
TatI	WGTACW	6 cut(s)	133, 331, 529, 747, 974, 1165
TfiI	GAWTC	6 cut(s)	164, 667, 831, 964, 1097, 1153
Tru1I	TTAA	3 cut(s)	609, 920, 924
Tru9I	TTAA	3 cut(s)	609, 920, 924
TscAI	CASTG	1 cut(s)	1165
TseFI	GTSAC	3 cut(s)	83, 281, 479
Tsp45I	GTSAC	3 cut(s)	83, 281, 479
TspDTI	ATGAA	2 cut(s)	680, 1079
TspRI	CASTG	1 cut(s)	1165
VpaK11BI	GGWCC	1 cut(s)	896
XapI	RAATTY	3 cut(s)	100, 182, 1114
XceI	RCATGY	3 cut(s)	8, 206, 404
Zsp2I	ATGCAT	4 cut(s)	6, 10, 204, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.