Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0012666

Physical Location & Seq

Genomic Coordinates Forward (+)

38025493 .. 38026693

Gene Structure 1201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG302300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCATGCAGTGTGGGTATCACTGAAGGAGAATGTCAAGTGTGGAAGCAAGCTTGCAGATGTTATTGGCTTGCGAGAAAGATGTGACAGAAGAAGTAAGAACTCCGGAAAAGAAAGTTTGGATGGTGAACTTGTACTTGCTCATGGCAAAGAGACCCCATTCCGGGAACAGAAATACCGTTCAAGCTACACACAGGCACAGCTCTTTGAGCTTAAGAACGGAGACCCATCAAGGAACATCATTGAGATGATTGTTCGAAAAGCATCAATGAATCCTTCAAAGCCATCAGGCAGGATCAAGAGTGTCTTGAGGGTGAAGAACTCCATAGAAACACTTGAAAGATTTGAGAAGTACAGAGAGAAGGTAAAGAAGATGGCCAAAGAGAGATACATGAGGCACCCAAGAAGCACAGTAGATGGAAATGAGCTGATGAGATTCTATGGCATAACAATGACCTGTTGCAATGGAGAGTCAAGGAGAGAGCCCGAGCTTTGTAACGGTCCAACTTGTCGAGTTTGCAGGTTAATTAAGTCGAACTTTGACACAGAATATATATTGAAGAATGGGATTCAGTTGAGTACAAGTAGTGAAAACACCATTGCCGTTACAAGGGCAACCAAGGCAAAGAGGGCCGTAATAGTTTGCAGGACAATTGCAGGGAGCATTATTAATGTGGATGACAAGGAATATGACGAGTCTGATTCAACTGGAAACCGAAATTTGCATTCCACCACCACAGAATATCTGTTAGTGCAGAATCCCAGTGCTGTACTTCCCTGTTTTGTGATAGTTTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

30.25

Weight (kDa)

9.43

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012666)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G232700_v2.0.a1 Prupe.4G232900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0042611
rosa_laevigata	RLG00000034143
rosa_multiflora	Rmu_sc0004704.1_g000006 Rmu_sc0012301.1_g000001 Rmu_sc0012301.1_g000008
rosa_roxburghii	Rroxscaffold_1G00038030 Rroxscaffold_1G00038050
rosa_rugosa	Rorug05G0203200
rosa_samantha	Rh5AG288000 Rh5AG288200 Rh5AG288500 Rh5BG292400 Rh5CG324800 Rh5DG302200 Rh5DG302300
rosa_wichuraiana	Rw5G026740 Rw5G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	510
AccB1I	GGYRCC	1 cut(s)	396
AccIII	TCCGGA	1 cut(s)	104
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	718
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	4 cut(s)	135, 353, 580, 771
AfiI	CCNNNNNNNGG	3 cut(s)	162, 163, 609
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	6 cut(s)	183, 279, 338, 559, 705, 796
AluBI	AGCT	6 cut(s)	52, 186, 202, 211, 427, 490
AluI	AGCT	6 cut(s)	52, 186, 202, 211, 427, 490
Alw26I	GTCTC	2 cut(s)	146, 216
AlwI	GGATC	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	485
Aor13HI	TCCGGA	1 cut(s)	104
AoxI	GGCC	2 cut(s)	375, 630
ApoI	RAATTY	1 cut(s)	718
AseI	ATTAAT	1 cut(s)	669
AspS9I	GGNCC	2 cut(s)	500, 630
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	137, 325
AsuII	TTCGAA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	486
BccI	CCATC	5 cut(s)	116, 235, 292, 367, 410
BceAI	ACGGC	2 cut(s)	587, 617
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	146, 216
BfrI	CTTAAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	510
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	500
BmeT110I	CYCGRG	1 cut(s)	485
BmgT120I	GGNCC	2 cut(s)	500, 630
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	164
BmrI	ACTGGG	1 cut(s)	756
BmsI	GCATC	1 cut(s)	272
BmuI	ACTGGG	1 cut(s)	756
Bpu14I	TTCGAA	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	164
BsaI	GGTCTC	2 cut(s)	146, 216
BsaJI	CCNNGG	1 cut(s)	618
BsaWI	WCCGGW	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 163, 609
Bse1I	ACTGG	2 cut(s)	712, 762
Bse3DI	GCAATG	2 cut(s)	469, 597
BseAI	TCCGGA	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	618
BseGI	GGATG	2 cut(s)	127, 682
BseLI	CCNNNNNNNGG	3 cut(s)	162, 163, 609
BseMI	GCAATG	2 cut(s)	469, 597
BseNI	ACTGG	2 cut(s)	712, 762
BsgI	GTGCAG	1 cut(s)	773
BshFI	GGCC	2 cut(s)	377, 632
BshNI	GGYRCC	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	2 cut(s)	105, 163
BslI	CCNNNNNNNGG	3 cut(s)	162, 163, 609
BsmAI	GTCTC	2 cut(s)	146, 216
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	2 cut(s)	377, 632
Bso31I	GGTCTC	2 cut(s)	146, 216
BsoBI	CYCGRG	1 cut(s)	485
Bsp119I	TTCGAA	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp13I	TCCGGA	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	294
BspANI	GGCC	2 cut(s)	377, 632
BspEI	TCCGGA	1 cut(s)	104
BspLI	GGNNCC	1 cut(s)	398
BspMI	ACCTGC	1 cut(s)	510
BspPI	GGATC	1 cut(s)	302
BspT104I	TTCGAA	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	396
BspTI	CTTAAG	1 cut(s)	212
BspTNI	GGTCTC	2 cut(s)	146, 216
BsrDI	GCAATG	2 cut(s)	469, 597
BsrI	ACTGG	2 cut(s)	712, 762
BssECI	CCNNGG	1 cut(s)	618
BssMI	GATC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	618
Bst4CI	ACNGT	3 cut(s)	179, 412, 500
BstAFI	CTTAAG	1 cut(s)	212
BstBI	TTCGAA	1 cut(s)	256
BstC8I	GCNNGC	4 cut(s)	6, 50, 54, 71
BstF5I	GGATG	2 cut(s)	127, 682
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	2 cut(s)	146, 216
BstMBI	GATC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 620, 629
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	377, 632
BtsCI	GGATG	2 cut(s)	127, 682
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	3 cut(s)	15, 20, 769
BveI	ACCTGC	1 cut(s)	510
Cac8I	GCNNGC	4 cut(s)	6, 50, 54, 71
Cfr13I	GGNCC	2 cut(s)	500, 630
Csp6I	GTAC	4 cut(s)	134, 352, 579, 770
CviAII	CATG	3 cut(s)	5, 143, 391
CviQI	GTAC	4 cut(s)	134, 352, 579, 770
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	618
Eco24I	GRGCYC	1 cut(s)	486
Eco31I	GGTCTC	2 cut(s)	146, 216
Eco47I	GGWCC	1 cut(s)	500
Eco57I	CTGAAG	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	485
EcoT14I	CCWWGG	1 cut(s)	618
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	3 cut(s)	8, 146, 394
FaiI	YATR	9 cut(s)	6, 144, 326, 392, 441, 446, 552, 554, 690
FalI	AAGNNNNNCTT	4 cut(s)	290, 322, 521, 553
FatI	CATG	3 cut(s)	4, 142, 390
FokI	GGATG	2 cut(s)	134, 689
FriOI	GRGCYC	1 cut(s)	486
HaeIII	GGCC	2 cut(s)	377, 632
HapII	CCGG	2 cut(s)	105, 163
Hin1II	CATG	3 cut(s)	8, 146, 394
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	7 cut(s)	271, 435, 470, 568, 695, 701, 757
HpaII	CCGG	2 cut(s)	105, 163
HphI	GGTGA	2 cut(s)	137, 325
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	700
Hpy188III	TCNNGA	3 cut(s)	105, 298, 307
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	3 cut(s)	19, 285, 355
HpyCH4III	ACNGT	3 cut(s)	179, 412, 500
HpyCH4V	TGCA	9 cut(s)	4, 8, 56, 462, 519, 645, 656, 724, 754
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 620, 629
Hsp92II	CATG	3 cut(s)	8, 146, 394
Kpn2I	TCCGGA	1 cut(s)	104
Kzo9I	GATC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	660
LweI	GCATC	1 cut(s)	272
MaeIII	GTNAC	3 cut(s)	83, 494, 604
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	4 cut(s)	102, 328, 382, 571
MfeI	CAATTG	1 cut(s)	651
MhlI	GDGCHC	1 cut(s)	486
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	3 cut(s)	525, 651, 718
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	2 cut(s)	479, 704
MmeI	TCCRAC	1 cut(s)	527
MnlI	CCTC	3 cut(s)	303, 387, 621
Mox20I	TGGCCA	1 cut(s)	377
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	4 cut(s)	213, 524, 528, 669
MslI	CAYNNNNRTG	2 cut(s)	245, 449
Msp20I	TGGCCA	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	2 cut(s)	105, 163
MspR9I	CCNGG	1 cut(s)	164
MunI	CAATTG	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	724
MwoI	GCNNNNNNNGC	3 cut(s)	208, 620, 629
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	3 cut(s)	8, 146, 394
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	83
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
NspV	TTCGAA	1 cut(s)	256
PacI	TTAATTAA	1 cut(s)	528
PaeI	GCATGC	1 cut(s)	8
PctI	GAATGC	1 cut(s)	724
PfeI	GAWTC	5 cut(s)	271, 435, 568, 701, 757
PfoI	TCCNGGA	1 cut(s)	162
PleI	GAGTC	2 cut(s)	478, 703
PpsI	GAGTC	2 cut(s)	478, 703
PshBI	ATTAAT	1 cut(s)	669
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	2 cut(s)	500, 630
RsaI	GTAC	4 cut(s)	135, 353, 580, 771
RsaNI	GTAC	4 cut(s)	134, 352, 579, 770
RseI	CAYNNNNRTG	2 cut(s)	245, 449
SaqAI	TTAA	4 cut(s)	213, 524, 528, 669
Sau3AI	GATC	1 cut(s)	294
Sau96I	GGNCC	2 cut(s)	500, 630
SchI	GAGTC	2 cut(s)	479, 704
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	486
SetI	ASST	9 cut(s)	54, 188, 204, 213, 366, 429, 458, 492, 524
SfaNI	GCATC	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	256
SinI	GGWCC	1 cut(s)	500
SmiMI	CAYNNNNRTG	2 cut(s)	245, 449
SmlI	CTYRAG	2 cut(s)	212, 307
SmoI	CTYRAG	2 cut(s)	212, 307
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	3 cut(s)	525, 651, 718
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	3 cut(s)	179, 412, 500
TaqI	TCGA	3 cut(s)	256, 511, 533
TasI	AATT	3 cut(s)	525, 651, 718
TatI	WGTACW	4 cut(s)	133, 351, 578, 769
TfiI	GAWTC	5 cut(s)	271, 435, 568, 701, 757
Tru1I	TTAA	4 cut(s)	213, 524, 528, 669
Tru9I	TTAA	4 cut(s)	213, 524, 528, 669
TscAI	CASTG	3 cut(s)	15, 27, 769
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	284
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	3 cut(s)	15, 27, 769
Vha464I	CTTAAG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	500
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	1 cut(s)	718
XceI	RCATGY	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.