Prupe.4G232900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
14975850 .. 14976276
427 bp
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UTR
Exon/CDS
Intron
Prupe.4G232900.1

Sequence Viewer

Length: 384 bp
ATGAATCCTTCAAAACCATCAAGTAGGATCAAAAGCGCTCTGCAGTCGAAGCGAATCTCTGAGCTTTGTAAGGGCCAGACTTGTCAAGTTTGCAGGATAATTCAATCAAACTTTGACACAGAATATAGACTGAAGAATGAGATTCAATTGAGTACAAATAGCAAGGAATTCGGTGAAAGCACCATTACCATTACGAGGAGGAACAAGATAAAAAGGGCTGTAATAGTTTGCAGGACAATTGCAGGGAGCATGGTTAATATGACAGACAAGGAAACTGAAGAGTATGATTCAACTGGAAACCAAAACCTGGATTCTACCTCAGAATATTTGATAGTGAGGAAACCCTGTGCTGTGCTTCCCTGTTTTGTCATAGTTTTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.38

Weight (kDa)

9.13

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 307
AclWI GGATC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 2 cut(s) 152, 297
AfaI GTAC 1 cut(s) 154
AfeI AGCGCT 1 cut(s) 37
AfiI CCNNNNNNNGG 2 cut(s) 195, 307
AgsI TTSAA 4 cut(s) 12, 104, 146, 291
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
AlwI GGATC 1 cut(s) 35
Aor51HI AGCGCT 1 cut(s) 37
AoxI GGCC 1 cut(s) 73
ApoI RAATTY 1 cut(s) 167
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 185, 370
BccI CCATC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 1 cut(s) 308
BfmI CTRYAG 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 2 cut(s) 195, 307
Bse1I ACTGG 1 cut(s) 298
BseBI CCWGG 1 cut(s) 308
BseLI CCNNNNNNNGG 2 cut(s) 195, 307
BseMII CTCAG 2 cut(s) 51, 333
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 211
BshFI GGCC 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 195, 307
BsnI GGCC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 27
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 2 cut(s) 52, 332
BspMAI CTGCAG 1 cut(s) 45
BspPI GGATC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 298
BssMI GATC 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 308
Bst6I CTCTTC 1 cut(s) 273
BstDEI CTNAG 2 cut(s) 60, 319
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstSFI CTRYAG 1 cut(s) 41
BsuRI GGCC 1 cut(s) 75
CfoI GCGC 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 153
CviAII CATG 1 cut(s) 250
CviJI RGCY 3 cut(s) 64, 75, 218
CviKI_1 RGCY 3 cut(s) 64, 75, 218
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 2 cut(s) 60, 319
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco47III AGCGCT 1 cut(s) 37
Eco57I CTGAAG 2 cut(s) 152, 297
EcoRI GAATTC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 306
FaeI CATG 1 cut(s) 253
FaiI YATR 5 cut(s) 126, 251, 260, 285, 371
FatI CATG 1 cut(s) 249
GlaI GCGC 1 cut(s) 37
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 1 cut(s) 75
HhaI GCGC 1 cut(s) 38
Hin1II CATG 1 cut(s) 253
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HinfI GANTC 5 cut(s) 4, 54, 142, 287, 311
HphI GGTGA 2 cut(s) 185, 370
Hpy188I TCNGA 2 cut(s) 61, 322
HpyAV CCTTC 1 cut(s) 18
HpyCH4V TGCA 4 cut(s) 43, 93, 231, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 2 cut(s) 60, 319
Hsp92II CATG 1 cut(s) 253
HspAI GCGC 1 cut(s) 36
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 246
LpnPI CCDG 9 cut(s) 79, 89, 217, 228, 279, 293, 320, 358, 373
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 2 cut(s) 145, 290
MfeI CAATTG 2 cut(s) 146, 237
MluCI AATT 4 cut(s) 99, 146, 167, 237
MnlI CCTC 4 cut(s) 189, 192, 328, 330
MseI TTAA 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 308
MunI CAATTG 2 cut(s) 146, 237
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 49
NdeII GATC 1 cut(s) 27
NlaIII CATG 1 cut(s) 253
PfeI GAWTC 5 cut(s) 4, 54, 142, 287, 311
PflMI CCANNNNNTGG 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspPI GGNCC 1 cut(s) 73
PstI CTGCAG 1 cut(s) 45
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 255
Sau3AI GATC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 308
SetI ASST 4 cut(s) 66, 309, 320, 383
SfcI CTRYAG 1 cut(s) 41
Sse9I AATT 4 cut(s) 99, 146, 167, 237
SspI AATATT 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 306
TaqI TCGA 1 cut(s) 47
TasI AATT 4 cut(s) 99, 146, 167, 237
TatI WGTACW 1 cut(s) 152
TfiI GAWTC 5 cut(s) 4, 54, 142, 287, 311
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 307
XapI RAATTY 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.