Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0012666

Physical Location & Seq

Genomic Coordinates Forward (+)

38810847 .. 38812072

Gene Structure 1226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G026740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCATGCAATGTGGGTATCATTGAAGGAGAATGTCAAGTGTGGAAGCAAGCTTGCAGATGTTATTGGCTTGCGAGAAAAATGTGACAGAAGAAGTGAGAACTCCAGAAAAGCGAGTTTGGATGGTGAACTTGTACTTGCTCATGGCAAAGAGACCCTATTCCGCGAACCGATATGCCGTTCAAGCTACACACAGGCACAGCTCTTTGAGCTCAACATCGGGGACGTATCAAGGAACATCATTGAGATGATTGTTCGAAAAGCATCAAAGAATCCTCCAAAGCCATCAGGCAGGATCAAAAGTGTCTTGAGGGTGAATAACTCCATAGAAACACTTGAAAGGTTTGAGAAGTACAGAGAGAAGGTAAAGAAGATGGCCAAAGAGAGATATATGAAGCACCCAAGAAGCACAGTAGATGGAAATGAGCTGATGAGATTCTATAACACAACAATGACCTGTTGCAATGGAGAGTCAAGGAGAGGCCCCGAGCTTTGTAATGGTCCAACTTGTCGAGTTTGCAGGTTAATTAAGTCGAACTTCGACTCAGAATATGTATTGGAGAATGGGATTCAGTTAAGTACAAGTAGTGAAAACACCATTGCCGTTGCGAGGGCAGCCAAGGCAAAGAGGGCTGTAATAGTTTGCAGGACAATTGCAGGGAGCATTATTAATGTGGAGGACAAGGAATATGACGAGTCTGATTCAATTGGAAACCGAAATTTGCATTCCACCACCACAGAATATCTTTTGGTGCAGAATCCCAGTGCTGTACTTCCCTGTTTTGTAGTAGTTTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

30.06

Weight (kDa)

9.21

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012666)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G232700_v2.0.a1 Prupe.4G232900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0042611
rosa_laevigata	RLG00000034143
rosa_multiflora	Rmu_sc0004704.1_g000006 Rmu_sc0012301.1_g000001 Rmu_sc0012301.1_g000008
rosa_roxburghii	Rroxscaffold_1G00038030 Rroxscaffold_1G00038050
rosa_rugosa	Rorug05G0203200
rosa_samantha	Rh5AG288000 Rh5AG288200 Rh5AG288500 Rh5BG292400 Rh5CG324800 Rh5DG302200 Rh5DG302300
rosa_wichuraiana	Rw5G026740 Rw5G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	510
AccII	CGCG	1 cut(s)	165
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	718
AfaI	GTAC	4 cut(s)	135, 353, 580, 771
AfiI	CCNNNNNNNGG	1 cut(s)	609
AgsI	TTSAA	5 cut(s)	25, 183, 338, 705, 796
AluBI	AGCT	6 cut(s)	52, 186, 202, 211, 427, 490
AluI	AGCT	6 cut(s)	52, 186, 202, 211, 427, 490
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	485
AoxI	GGCC	2 cut(s)	375, 481
ApeKI	GCWGC	1 cut(s)	614
ApoI	RAATTY	1 cut(s)	718
AseI	ATTAAT	1 cut(s)	669
AspS9I	GGNCC	2 cut(s)	482, 500
AsuHPI	GGTGA	2 cut(s)	137, 325
AsuII	TTCGAA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	626
BccI	CCATC	4 cut(s)	116, 292, 367, 410
BceAI	ACGGC	2 cut(s)	162, 587
BcoDI	GTCTC	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	510
BisI	GCNGC	1 cut(s)	615
BlsI	GCNGC	1 cut(s)	616
Bme18I	GGWCC	1 cut(s)	500
BmeT110I	CYCGRG	1 cut(s)	485
BmgT120I	GGNCC	2 cut(s)	482, 500
BmiI	GGNNCC	1 cut(s)	484
BmrI	ACTGGG	1 cut(s)	756
BmsI	GCATC	1 cut(s)	272
BmuI	ACTGGG	1 cut(s)	756
BpmI	CTGGAG	1 cut(s)	88
Bpu14I	TTCGAA	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	328
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	618
Bsc4I	CCNNNNNNNGG	1 cut(s)	609
Bse1I	ACTGG	1 cut(s)	762
Bse3DI	GCAATG	3 cut(s)	15, 469, 597
BseDI	CCNNGG	1 cut(s)	618
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	609
BseMI	GCAATG	3 cut(s)	15, 469, 597
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	1 cut(s)	762
BseXI	GCAGC	1 cut(s)	626
BsgI	GTGCAG	1 cut(s)	773
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	2 cut(s)	377, 483
BsiHKAI	GWGCWC	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	485
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	609
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	2 cut(s)	377, 483
Bso31I	GGTCTC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	485
Bsp119I	TTCGAA	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	294
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	2 cut(s)	377, 483
BspCNI	CTCAG	1 cut(s)	557
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	484
BspMI	ACCTGC	1 cut(s)	510
BspPI	GGATC	1 cut(s)	302
BspT104I	TTCGAA	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	146
BsrDI	GCAATG	3 cut(s)	15, 469, 597
BsrI	ACTGG	1 cut(s)	762
BssECI	CCNNGG	1 cut(s)	618
BssMI	GATC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	618
Bst4CI	ACNGT	1 cut(s)	412
BstBI	TTCGAA	1 cut(s)	256
BstC8I	GCNNGC	4 cut(s)	6, 50, 54, 71
BstDEI	CTNAG	1 cut(s)	544
BstF5I	GGATG	1 cut(s)	127
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	5 cut(s)	183, 208, 614, 620, 629
BstNSI	RCATGY	1 cut(s)	8
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	626
BsuRI	GGCC	2 cut(s)	377, 483
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	769
BveI	ACCTGC	1 cut(s)	510
Cac8I	GCNNGC	4 cut(s)	6, 50, 54, 71
Cfr13I	GGNCC	2 cut(s)	482, 500
Csp6I	GTAC	4 cut(s)	134, 352, 579, 770
CviAII	CATG	2 cut(s)	5, 143
CviQI	GTAC	4 cut(s)	134, 352, 579, 770
DdeI	CTNAG	1 cut(s)	544
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	618
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	500
Eco53kI	GAGCTC	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	618
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	2 cut(s)	8, 146
FaiI	YATR	9 cut(s)	6, 144, 175, 326, 390, 392, 441, 552, 690
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	2 cut(s)	4, 142
Fnu4HI	GCNGC	1 cut(s)	615
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	615
GluI	GCNGC	1 cut(s)	615
GsuI	CTGGAG	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	377, 483
Hin1II	CATG	2 cut(s)	8, 146
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	8 cut(s)	271, 435, 470, 542, 568, 695, 701, 757
HphI	GGTGA	2 cut(s)	137, 325
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	2 cut(s)	547, 700
Hpy188III	TCNNGA	2 cut(s)	105, 307
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	19, 355
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	9 cut(s)	4, 8, 56, 462, 519, 645, 656, 724, 754
HpyF10VI	GCNNNNNNNGC	5 cut(s)	183, 208, 614, 620, 629
HpyF3I	CTNAG	1 cut(s)	544
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	8, 146
Kzo9I	GATC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	660
Lsp1109I	GCAGC	1 cut(s)	626
LweI	GCATC	1 cut(s)	272
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	2 cut(s)	102, 382
MfeI	CAATTG	2 cut(s)	651, 705
MhlI	GDGCHC	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	4 cut(s)	525, 651, 705, 718
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	3 cut(s)	479, 536, 704
MmeI	TCCRAC	1 cut(s)	527
MnlI	CCTC	6 cut(s)	285, 303, 473, 603, 621, 670
Mox20I	TGGCCA	1 cut(s)	377
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	4 cut(s)	524, 528, 575, 669
MslI	CAYNNNNRTG	2 cut(s)	245, 449
Msp20I	TGGCCA	1 cut(s)	377
MunI	CAATTG	2 cut(s)	651, 705
Mva1269I	GAATGC	1 cut(s)	724
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	5 cut(s)	183, 208, 614, 620, 629
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	2 cut(s)	8, 146
NlaIV	GGNNCC	1 cut(s)	484
NmuCI	GTSAC	1 cut(s)	83
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
NspV	TTCGAA	1 cut(s)	256
PacI	TTAATTAA	1 cut(s)	528
PaeI	GCATGC	1 cut(s)	8
PctI	GAATGC	1 cut(s)	724
PfeI	GAWTC	5 cut(s)	271, 435, 568, 701, 757
PkrI	GCNGC	1 cut(s)	616
PleI	GAGTC	3 cut(s)	478, 536, 703
PpsI	GAGTC	3 cut(s)	478, 536, 703
PshBI	ATTAAT	1 cut(s)	669
Psp124BI	GAGCTC	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	484
PspPI	GGNCC	2 cut(s)	482, 500
RsaI	GTAC	4 cut(s)	135, 353, 580, 771
RsaNI	GTAC	4 cut(s)	134, 352, 579, 770
RseI	CAYNNNNRTG	2 cut(s)	245, 449
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	4 cut(s)	524, 528, 575, 669
SatI	GCNGC	1 cut(s)	615
Sau3AI	GATC	1 cut(s)	294
Sau96I	GGNCC	2 cut(s)	482, 500
SchI	GAGTC	3 cut(s)	479, 536, 704
SduI	GDGCHC	1 cut(s)	213
SfaNI	GCATC	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	256
SinI	GGWCC	1 cut(s)	500
SmiMI	CAYNNNNRTG	2 cut(s)	245, 449
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	4 cut(s)	525, 651, 705, 718
SsiI	CCGC	1 cut(s)	163
SstI	GAGCTC	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	4 cut(s)	256, 511, 533, 540
TasI	AATT	4 cut(s)	525, 651, 705, 718
TatI	WGTACW	4 cut(s)	133, 351, 578, 769
TfiI	GAWTC	5 cut(s)	271, 435, 568, 701, 757
Tru1I	TTAA	4 cut(s)	524, 528, 575, 669
Tru9I	TTAA	4 cut(s)	524, 528, 575, 669
TscAI	CASTG	1 cut(s)	769
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	614
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	407
TspRI	CASTG	1 cut(s)	769
VpaK11BI	GGWCC	1 cut(s)	500
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	1 cut(s)	718
XceI	RCATGY	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.