Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012301.1

Orthogroup ID

OG0012666

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 873

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012301.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 472 bp

atgcatgcagtgtgggtgtcactgaaggagaatgtcaagtgtggaagcaagcttgcagatgttattggcttgcgagaaagatgtgacagaagaagtaagaactccggaaaagaaagtttggatggtgaacttgtacttgctcatggcaaagagaccccattccgggaacagaaataccgttcaagctacacacaggcacagctctttgagcttaagaacggagacccatcaaggaacatcattgagatgattgttcgaaaagcatcaatgaatccttcaaagccatcaggcaggatcaaaattgtcttgagggtgaagaactccatagaaacacttgaaagatttgagaagtacagagagaaggtaaagaagatggccaaagagagatacacgaggcacccaagaagcacagtagatggaaatgagctgatgagattctatggcacaacaatgacctgttgcaatggagagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

18.16

Weight (kDa)

9.8

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012666)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G232700_v2.0.a1 Prupe.4G232900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0042611
rosa_laevigata	RLG00000034143
rosa_multiflora	Rmu_sc0004704.1_g000006 Rmu_sc0012301.1_g000001 Rmu_sc0012301.1_g000008
rosa_roxburghii	Rroxscaffold_1G00038030 Rroxscaffold_1G00038050
rosa_rugosa	Rorug05G0203200
rosa_samantha	Rh5AG288000 Rh5AG288200 Rh5AG288500 Rh5BG292400 Rh5CG324800 Rh5DG302200 Rh5DG302300
rosa_wichuraiana	Rw5G026740 Rw5G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	396
AccIII	TCCGGA	1 cut(s)	104
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	375
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	2 cut(s)	135, 353
AfiI	CCNNNNNNNGG	2 cut(s)	162, 163
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	183, 279, 338
AluBI	AGCT	5 cut(s)	52, 186, 202, 211, 427
AluI	AGCT	5 cut(s)	52, 186, 202, 211, 427
Alw26I	GTCTC	2 cut(s)	146, 216
AlwI	GGATC	1 cut(s)	302
Aor13HI	TCCGGA	1 cut(s)	104
AoxI	GGCC	1 cut(s)	375
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	137, 325
AsuII	TTCGAA	1 cut(s)	256
BalI	TGGCCA	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	396
BauI	CACGAG	1 cut(s)	391
BccI	CCATC	5 cut(s)	116, 235, 292, 367, 410
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	146, 216
BfrI	CTTAAG	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	1 cut(s)	272
Bpu14I	TTCGAA	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	164
BsaI	GGTCTC	2 cut(s)	146, 216
BsaWI	WCCGGW	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 163
Bse3DI	GCAATG	1 cut(s)	469
BseAI	TCCGGA	1 cut(s)	104
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	2 cut(s)	162, 163
BseMI	GCAATG	1 cut(s)	469
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	396
BsiSI	CCGG	2 cut(s)	105, 163
BslI	CCNNNNNNNGG	2 cut(s)	162, 163
BsmAI	GTCTC	2 cut(s)	146, 216
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	2 cut(s)	146, 216
Bsp119I	TTCGAA	1 cut(s)	256
Bsp13I	TCCGGA	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	377
BspEI	TCCGGA	1 cut(s)	104
BspLI	GGNNCC	1 cut(s)	398
BspPI	GGATC	1 cut(s)	302
BspT104I	TTCGAA	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	396
BspTI	CTTAAG	1 cut(s)	212
BspTNI	GGTCTC	2 cut(s)	146, 216
BsrDI	GCAATG	1 cut(s)	469
BssMI	GATC	1 cut(s)	294
BssSI	CACGAG	1 cut(s)	391
Bst2BI	CACGAG	1 cut(s)	391
Bst4CI	ACNGT	2 cut(s)	179, 412
BstAFI	CTTAAG	1 cut(s)	212
BstBI	TTCGAA	1 cut(s)	256
BstC8I	GCNNGC	4 cut(s)	6, 50, 54, 71
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	2 cut(s)	146, 216
BstMBI	GATC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	127
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	15, 20
Cac8I	GCNNGC	4 cut(s)	6, 50, 54, 71
Csp6I	GTAC	2 cut(s)	134, 352
CviAII	CATG	2 cut(s)	5, 143
CviJI	RGCY	8 cut(s)	52, 69, 186, 202, 211, 283, 377, 427
CviKI_1	RGCY	8 cut(s)	52, 69, 186, 202, 211, 283, 377, 427
CviQI	GTAC	2 cut(s)	134, 352
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	375
Eco31I	GGTCTC	2 cut(s)	146, 216
Eco57I	CTGAAG	1 cut(s)	44
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	8, 146
FaiI	YATR	4 cut(s)	6, 144, 326, 441
FatI	CATG	2 cut(s)	4, 142
FokI	GGATG	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	2 cut(s)	105, 163
Hin1II	CATG	2 cut(s)	8, 146
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	2 cut(s)	271, 435
HpaII	CCGG	2 cut(s)	105, 163
HphI	GGTGA	2 cut(s)	137, 325
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188III	TCNNGA	2 cut(s)	105, 307
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	3 cut(s)	19, 285, 355
HpyCH4III	ACNGT	2 cut(s)	179, 412
HpyCH4V	TGCA	4 cut(s)	4, 8, 56, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
Hsp92II	CATG	2 cut(s)	8, 146
Kpn2I	TCCGGA	1 cut(s)	104
Kzo9I	GATC	1 cut(s)	294
LpnPI	CCDG	5 cut(s)	118, 176, 179, 273, 277
LweI	GCATC	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	18, 83
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	3 cut(s)	102, 328, 382
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	1 cut(s)	300
MluNI	TGGCCA	1 cut(s)	377
MnlI	CCTC	2 cut(s)	303, 387
Mox20I	TGGCCA	1 cut(s)	377
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	2 cut(s)	245, 449
Msp20I	TGGCCA	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	2 cut(s)	105, 163
MspR9I	CCNGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	208
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	2 cut(s)	8, 146
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	2 cut(s)	18, 83
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
NspV	TTCGAA	1 cut(s)	256
PaeI	GCATGC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	271, 435
PfoI	TCCNGGA	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	398
RsaI	GTAC	2 cut(s)	135, 353
RsaNI	GTAC	2 cut(s)	134, 352
RseI	CAYNNNNRTG	2 cut(s)	245, 449
SaqAI	TTAA	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	164
SetI	ASST	7 cut(s)	54, 188, 204, 213, 366, 429, 458
SfaNI	GCATC	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	256
SmiMI	CAYNNNNRTG	2 cut(s)	245, 449
SmlI	CTYRAG	2 cut(s)	212, 307
SmoI	CTYRAG	2 cut(s)	212, 307
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	179, 412
TaqI	TCGA	1 cut(s)	256
TasI	AATT	1 cut(s)	300
TatI	WGTACW	2 cut(s)	133, 351
TfiI	GAWTC	2 cut(s)	271, 435
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	2 cut(s)	15, 27
TseFI	GTSAC	2 cut(s)	18, 83
Tsp45I	GTSAC	2 cut(s)	18, 83
TspDTI	ATGAA	1 cut(s)	284
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	2 cut(s)	15, 27
Vha464I	CTTAAG	1 cut(s)	212
XceI	RCATGY	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.