Rmu_sc0012301.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012301.1
OG0012666
Physical Location & Seq
Reverse (-)
35950 .. 37466
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012301.1_g000008.1.cds

Sequence Viewer

Length: 1092 bp
atgcaaagaagaaatgctacactgaaaaggctagaattcacagaaagatcactctctcacactctcgctcgctcagaagtctcaaacagagagatgcatgcaatgtgcgtatcattgaatgacaatgtcaagtgtggtagcaagcttgcaaatgttattggcttgcgagaaagatgtgatagaagaagtaagaattccagaaaagcgagtttggatggtgaacttgtacttgctcatggcaaagagaccccagaagtctcgctcacttgctcagaagtctcaaacagagagatgcatgcaatgtgggtatcattgaaggagaatgtcaagtgtggaagcaagcttgcagatgttattggcttgcgagaaaaatgtgacagaagaagtaagaactccagaaaagcgagtttggatggtgaacttgtacttgctcatggcaatgagaccccattccgtgaaccgatatgccgttcaagctacacacaggcacagctctttgagctcaacatcggggacgtatcaaggaacatcattgagatgattgttcgaaaagcatcaatgaatcctccaaagccatcaggcaggatcaaaagtgtcttgagggtgaataactccatagaaacacttgaaaggtttgagaagtacagagagaaggtaaagaagatggccaaagagagatatatgaagcacccaagaagcacagtagatggaaatgagctgatgagattctataacacaacaatgacctgttgcaatggagagtcaaggagaggccccgagctttgtaatggtccaacttgtcgagtttgcaggttaattaagtcgaacttcgacacagaatctgtattggagaatgggattcagttaagtactagtagtgaaaacaccattgccgttgcgagggcagccaaggcaaagagggcagtaatagtttgcaggacaattgcagggagcattattaatgtggaggacaaggaatatgacgagtctgattcaattggaagccgaaatttgcattccaccaccacagaatatcttttggtgaagaatcccagtgctgtacttccctgttttgtagtagttttcaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

40.87

Weight (kDa)

9.37

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 801
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 1 cut(s) 666
AcsI RAATTY 3 cut(s) 35, 193, 1009
AfaI GTAC 5 cut(s) 228, 426, 644, 871, 1062
AfiI CCNNNNNNNGG 1 cut(s) 900
AgsI TTSAA 6 cut(s) 118, 316, 474, 629, 996, 1087
AhlI ACTAGT 1 cut(s) 872
AluBI AGCT 7 cut(s) 145, 343, 477, 493, 502, 718, 781
AluI AGCT 7 cut(s) 145, 343, 477, 493, 502, 718, 781
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 5 cut(s) 85, 239, 262, 283, 437
AlwI GGATC 1 cut(s) 593
AlwNI CAGNNNCTG 1 cut(s) 842
Ama87I CYCGRG 1 cut(s) 776
AoxI GGCC 2 cut(s) 666, 772
ApeKI GCWGC 1 cut(s) 905
ApoI RAATTY 3 cut(s) 35, 193, 1009
AseI ATTAAT 1 cut(s) 960
AspS9I GGNCC 2 cut(s) 773, 791
AsuHPI GGTGA 4 cut(s) 230, 428, 616, 1054
AsuII TTCGAA 1 cut(s) 547
AvaI CYCGRG 1 cut(s) 776
AvaII GGWCC 1 cut(s) 791
BalI TGGCCA 1 cut(s) 668
BanII GRGCYC 1 cut(s) 504
BarI GAAGNNNNNNTAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 1 cut(s) 917
BccI CCATC 5 cut(s) 209, 407, 583, 658, 701
BceAI ACGGC 2 cut(s) 453, 878
BcoDI GTCTC 5 cut(s) 85, 239, 262, 283, 437
BcuI ACTAGT 1 cut(s) 872
BfaI CTAG 2 cut(s) 32, 873
BfuAI ACCTGC 1 cut(s) 801
BisI GCNGC 1 cut(s) 906
BlsI GCNGC 1 cut(s) 907
BmcAI AGTACT 1 cut(s) 871
Bme18I GGWCC 1 cut(s) 791
BmeT110I CYCGRG 1 cut(s) 776
BmgT120I GGNCC 2 cut(s) 773, 791
BmiI GGNNCC 1 cut(s) 775
BmrI ACTGGG 1 cut(s) 1047
BmsI GCATC 3 cut(s) 84, 282, 563
BmuI ACTGGG 1 cut(s) 1047
BpmI CTGGAG 1 cut(s) 379
Bpu14I TTCGAA 1 cut(s) 547
BpuEI CTTGAG 1 cut(s) 619
BsaI GGTCTC 2 cut(s) 239, 437
BsaJI CCNNGG 1 cut(s) 909
Bsc4I CCNNNNNNNGG 1 cut(s) 900
Bse1I ACTGG 1 cut(s) 1053
Bse3DI GCAATG 5 cut(s) 108, 306, 445, 760, 888
BseDI CCNNGG 1 cut(s) 909
BseGI GGATG 2 cut(s) 220, 418
BseLI CCNNNNNNNGG 1 cut(s) 900
BseMI GCAATG 5 cut(s) 108, 306, 445, 760, 888
BseMII CTCAG 2 cut(s) 87, 285
BseNI ACTGG 1 cut(s) 1053
BseXI GCAGC 1 cut(s) 917
BshFI GGCC 2 cut(s) 668, 774
BsiHKAI GWGCWC 1 cut(s) 504
BsiHKCI CYCGRG 1 cut(s) 776
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 1 cut(s) 900
BsmAI GTCTC 5 cut(s) 85, 239, 262, 283, 437
BsmFI GGGAC 1 cut(s) 527
BsmI GAATGC 1 cut(s) 1015
BsnI GGCC 2 cut(s) 668, 774
Bso31I GGTCTC 2 cut(s) 239, 437
BsoBI CYCGRG 1 cut(s) 776
Bsp119I TTCGAA 1 cut(s) 547
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 2 cut(s) 47, 585
BspANI GGCC 2 cut(s) 668, 774
BspCNI CTCAG 2 cut(s) 86, 284
BspLI GGNNCC 1 cut(s) 775
BspMI ACCTGC 1 cut(s) 801
BspPI GGATC 1 cut(s) 593
BspT104I TTCGAA 1 cut(s) 547
BspTNI GGTCTC 2 cut(s) 239, 437
BsrDI GCAATG 5 cut(s) 108, 306, 445, 760, 888
BsrI ACTGG 1 cut(s) 1053
BssECI CCNNGG 1 cut(s) 909
BssMI GATC 2 cut(s) 47, 585
BssT1I CCWWGG 1 cut(s) 909
Bst4CI ACNGT 1 cut(s) 703
BstBI TTCGAA 1 cut(s) 547
BstC8I GCNNGC 9 cut(s) 70, 99, 143, 147, 164, 297, 341, 345, 362
BstDEI CTNAG 2 cut(s) 73, 271
BstF5I GGATG 2 cut(s) 220, 418
BstKTI GATC 2 cut(s) 50, 588
BstMAI GTCTC 5 cut(s) 85, 239, 262, 283, 437
BstMBI GATC 2 cut(s) 47, 585
BstMWI GCNNNNNNNGC 5 cut(s) 474, 499, 905, 911, 920
BstNSI RCATGY 2 cut(s) 101, 299
BstV1I GCAGC 1 cut(s) 917
BsuRI GGCC 2 cut(s) 668, 774
BtsCI GGATG 2 cut(s) 220, 418
BtsIMutI CAGTG 2 cut(s) 20, 1060
BveI ACCTGC 1 cut(s) 801
Cac8I GCNNGC 9 cut(s) 70, 99, 143, 147, 164, 297, 341, 345, 362
CaiI CAGNNNCTG 1 cut(s) 842
Cfr13I GGNCC 2 cut(s) 773, 791
Csp6I GTAC 5 cut(s) 227, 425, 643, 870, 1061
CviAII CATG 4 cut(s) 98, 236, 296, 434
CviQI GTAC 5 cut(s) 227, 425, 643, 870, 1061
DdeI CTNAG 2 cut(s) 73, 271
DpnI GATC 2 cut(s) 49, 587
DpnII GATC 2 cut(s) 47, 585
EaeI YGGCCR 1 cut(s) 666
Ecl136II GAGCTC 1 cut(s) 502
Eco130I CCWWGG 1 cut(s) 909
Eco24I GRGCYC 1 cut(s) 504
Eco31I GGTCTC 2 cut(s) 239, 437
Eco47I GGWCC 1 cut(s) 791
Eco53kI GAGCTC 1 cut(s) 502
Eco88I CYCGRG 1 cut(s) 776
EcoICRI GAGCTC 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 773
EcoRI GAATTC 2 cut(s) 35, 193
EcoT14I CCWWGG 1 cut(s) 909
EcoT22I ATGCAT 2 cut(s) 99, 297
EcoT38I GRGCYC 1 cut(s) 504
ErhI CCWWGG 1 cut(s) 909
FaeI CATG 4 cut(s) 101, 239, 299, 437
FalI AAGNNNNNCTT 2 cut(s) 812, 844
FaqI GGGAC 1 cut(s) 527
FatI CATG 4 cut(s) 97, 235, 295, 433
Fnu4HI GCNGC 1 cut(s) 906
FokI GGATG 2 cut(s) 227, 425
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 1 cut(s) 906
FspBI CTAG 2 cut(s) 32, 873
GluI GCNGC 1 cut(s) 906
GsuI CTGGAG 1 cut(s) 379
HaeIII GGCC 2 cut(s) 668, 774
Hin1II CATG 4 cut(s) 101, 239, 299, 437
HindIII AAGCTT 2 cut(s) 143, 341
HinfI GANTC 8 cut(s) 562, 726, 761, 839, 859, 986, 992, 1048
HphI GGTGA 4 cut(s) 230, 428, 616, 1054
Hpy166II GTNNAC 3 cut(s) 221, 419, 458
Hpy188I TCNGA 3 cut(s) 76, 274, 991
Hpy188III TCNNGA 3 cut(s) 198, 396, 598
Hpy8I GTNNAC 3 cut(s) 221, 419, 458
HpyAV CCTTC 2 cut(s) 310, 646
HpyCH4III ACNGT 1 cut(s) 703
HpyCH4IV ACGT 1 cut(s) 516
HpyF10VI GCNNNNNNNGC 5 cut(s) 474, 499, 905, 911, 920
HpyF3I CTNAG 2 cut(s) 73, 271
HpySE526I ACGT 1 cut(s) 516
Hsp92II CATG 4 cut(s) 101, 239, 299, 437
Kzo9I GATC 2 cut(s) 47, 585
LmnI GCTCC 1 cut(s) 951
Lsp1109I GCAGC 1 cut(s) 917
LweI GCATC 3 cut(s) 84, 282, 563
MaeI CTAG 2 cut(s) 32, 873
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 1 cut(s) 374
MalI GATC 2 cut(s) 49, 587
MboI GATC 2 cut(s) 47, 585
MboII GAAGA 5 cut(s) 21, 195, 393, 673, 1057
MfeI CAATTG 2 cut(s) 942, 996
MhlI GDGCHC 1 cut(s) 504
MlsI TGGCCA 1 cut(s) 668
MluCI AATT 6 cut(s) 35, 193, 816, 942, 996, 1009
MluNI TGGCCA 1 cut(s) 668
MlyI GAGTC 2 cut(s) 770, 995
MmeI TCCRAC 1 cut(s) 818
MnlI CCTC 6 cut(s) 576, 594, 764, 894, 912, 961
Mox20I TGGCCA 1 cut(s) 668
Mph1103I ATGCAT 2 cut(s) 99, 297
MscI TGGCCA 1 cut(s) 668
MseI TTAA 4 cut(s) 815, 819, 866, 960
MslI CAYNNNNRTG 3 cut(s) 438, 536, 740
Msp20I TGGCCA 1 cut(s) 668
MunI CAATTG 2 cut(s) 942, 996
Mva1269I GAATGC 1 cut(s) 1015
MwoI GCNNNNNNNGC 5 cut(s) 474, 499, 905, 911, 920
NdeII GATC 2 cut(s) 47, 585
NlaIII CATG 4 cut(s) 101, 239, 299, 437
NlaIV GGNNCC 1 cut(s) 775
NmuCI GTSAC 1 cut(s) 374
NsiI ATGCAT 2 cut(s) 99, 297
NspI RCATGY 2 cut(s) 101, 299
NspV TTCGAA 1 cut(s) 547
PacI TTAATTAA 1 cut(s) 819
PaeI GCATGC 2 cut(s) 101, 299
PctI GAATGC 1 cut(s) 1015
PfeI GAWTC 6 cut(s) 562, 726, 839, 859, 992, 1048
PflFI GACNNNGTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 907
PleI GAGTC 2 cut(s) 769, 994
PpsI GAGTC 2 cut(s) 769, 994
PshBI ATTAAT 1 cut(s) 960
Psp124BI GAGCTC 1 cut(s) 504
PspN4I GGNNCC 1 cut(s) 775
PspPI GGNCC 2 cut(s) 773, 791
PstNI CAGNNNCTG 1 cut(s) 842
PsyI GACNNNGTC 1 cut(s) 125
RsaI GTAC 5 cut(s) 228, 426, 644, 871, 1062
RsaNI GTAC 5 cut(s) 227, 425, 643, 870, 1061
RseI CAYNNNNRTG 3 cut(s) 438, 536, 740
SacI GAGCTC 1 cut(s) 504
SaqAI TTAA 4 cut(s) 815, 819, 866, 960
SatI GCNGC 1 cut(s) 906
Sau3AI GATC 2 cut(s) 47, 585
Sau96I GGNCC 2 cut(s) 773, 791
ScaI AGTACT 1 cut(s) 871
SchI GAGTC 2 cut(s) 770, 995
SduI GDGCHC 1 cut(s) 504
SfaNI GCATC 3 cut(s) 84, 282, 563
SfuI TTCGAA 1 cut(s) 547
SinI GGWCC 1 cut(s) 791
SmiMI CAYNNNNRTG 3 cut(s) 438, 536, 740
SmlI CTYRAG 1 cut(s) 598
SmoI CTYRAG 1 cut(s) 598
SpeI ACTAGT 1 cut(s) 872
SphI GCATGC 2 cut(s) 101, 299
Sse9I AATT 6 cut(s) 35, 193, 816, 942, 996, 1009
SspMI CTAG 2 cut(s) 32, 873
SstI GAGCTC 1 cut(s) 504
StyI CCWWGG 1 cut(s) 909
TaaI ACNGT 1 cut(s) 703
TaiI ACGT 1 cut(s) 519
TaqI TCGA 4 cut(s) 547, 802, 824, 831
TasI AATT 6 cut(s) 35, 193, 816, 942, 996, 1009
TatI WGTACW 5 cut(s) 226, 424, 642, 869, 1060
TfiI GAWTC 6 cut(s) 562, 726, 839, 859, 992, 1048
Tru1I TTAA 4 cut(s) 815, 819, 866, 960
Tru9I TTAA 4 cut(s) 815, 819, 866, 960
TscAI CASTG 2 cut(s) 27, 1060
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 1 cut(s) 905
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 2 cut(s) 575, 698
TspGWI ACGGA 1 cut(s) 443
TspRI CASTG 2 cut(s) 27, 1060
Tth111I GACNNNGTC 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 791
VspI ATTAAT 1 cut(s) 960
XapI RAATTY 3 cut(s) 35, 193, 1009
XceI RCATGY 2 cut(s) 101, 299
XspI CTAG 2 cut(s) 32, 873
ZrmI AGTACT 1 cut(s) 871
Zsp2I ATGCAT 2 cut(s) 99, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.