Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013350

Physical Location & Seq

Genomic Coordinates Forward (+)

15750907 .. 15753330

Gene Structure 2424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G239700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAATTGGGTGTTTTTAGTGTTTTTGTTGGTGCTTCAGTACTTGTTTTTTTGGGTGGTGTTGAAGTGGGCTTCTCGCAAAGTGGAGCATATGCAAAGAATTATATTAGCTGGGCTGATTTGAAGGTGGATGAGCAGAAGGAGGGGCTGAACTCCAGAAATGAATTCGTTAACGGAAGCCGGGTCATTGTGGTGGACAAGAATGGAGGAGGAGATTCTCTTACAGTTCAAGGAGCAGTTGATATGGTTCCAGAACAGAATACAGACAGAGTCAAAATTTACATTCTTCCTGGAATTTACAGAGAGAAGGTACTTGTACCGATTTCCAAGCCATACATATCATTCATTGGGAACCAGAATCAAACTTCTGATACTGTAATTACTTGGAACAACAAAGCATCTGATAGGGACGATACCGGTTCTGAACTTGGAACATATAGAACTGCTTCTGTAGCTATAGAGGCTGATTACTTCTGTGCAACTGGGATCACTTTCGAGAACTCAGTGGTTGCAGTACCTGGAGGATATGGAATGCAAGCAGTGGCTCTTAGAATTGCAGGTGATAAAGCCATGTTCTTCAAAGTAAAGGTGTTGGGGACACAAGATACACTCTTGGATGAGACTGGATCACACTACTTCTACCATAGTCACATTCAAGGAAGTGTAGACTTCATATTTGGTAGATCAAGATCACTCTACCAGGACTGTGTTCTTCAATCAACGGCAACGAGCTCGGGAGCAATAGCAGCTCATCACAGGGACTCACCATATGAAGATACAGGGTTCTCTTTTATGAACTGCAAAATCATTGGAACTGGCAGTATCTTATTGGGAAGAGCTTGGGGAGCTTATTCAAGAGCAGTGTATTCCTACTGTCATTTCGACGACATAATAACTCCCTCGGGGTGGAGTGACTGGAACCACCCAGAGAGACAGAAGACTGTGGAATTTGGAGAATACCACTGCAGGGGCAGAGGAGCAGCAGAGAGAAGAGGGAGGGTGCCATGGTTGAAGTCTTTCAGCTTTGAGGAGATAAGGCCTTTTCTGGATACCAAATTCATATATGGAGAGCAATGGCTTAAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010393 GO:0016052 GO:0016787 GO:0016788 GO:0017144 GO:0030599 GO:0042737 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0045488 GO:0045490 GO:0052689 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

363

Amino Acids

40.14

Weight (kDa)

5.79

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55590 AT5G55590
fragaria_vesca	FvH4_3g29490
malus_domestica	MD03G1186900.v1.1 MD11G1201900.v1.1
prunus_persica	Prupe.4G239700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0054371
rosa_laevigata	RLG00000034927
rosa_multiflora	Rmu_sc0005705.1_g000023 Rmu_sc0023043.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026500
rosa_rugosa	Rorug05G0285900
rosa_samantha	Rh5AG356400 Rh5BG368000 Rh5CG391300 Rh5DG382200
rosa_wichuraiana	Rw5G033480 Rw5G033650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	548
Acc36I	ACCTGC	1 cut(s)	548
AccB1I	GGYRCC	1 cut(s)	1000
AccI	GTMKAC	1 cut(s)	666
AclWI	GGATC	2 cut(s)	494, 634
AcsI	RAATTY	5 cut(s)	164, 276, 294, 947, 1055
AcuI	CTGAAG	1 cut(s)	21
AfaI	GTAC	4 cut(s)	42, 312, 318, 516
AfiI	CCNNNNNNNGG	2 cut(s)	906, 967
AgeI	ACCGGT	1 cut(s)	416
AgsI	TTSAA	8 cut(s)	65, 124, 230, 580, 656, 716, 855, 1012
AjnI	CCWGG	3 cut(s)	289, 517, 699
AluBI	AGCT	7 cut(s)	111, 455, 732, 749, 839, 848, 1023
AluI	AGCT	7 cut(s)	111, 455, 732, 749, 839, 848, 1023
Alw21I	GWGCWC	1 cut(s)	734
Alw26I	GTCTC	2 cut(s)	614, 925
AlwI	GGATC	2 cut(s)	494, 634
AlwNI	CAGNNNCTG	1 cut(s)	518
Ama87I	CYCGRG	2 cut(s)	733, 901
AoxI	GGCC	1 cut(s)	1037
ApeKI	GCWGC	2 cut(s)	746, 980
ApoI	RAATTY	5 cut(s)	164, 276, 294, 947, 1055
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
AsiGI	ACCGGT	1 cut(s)	416
Asp700I	GAANNNNTTC	2 cut(s)	445, 1016
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	572, 756
AvaI	CYCGRG	2 cut(s)	733, 901
BanI	GGYRCC	1 cut(s)	1000
BanII	GRGCYC	1 cut(s)	734
BbsI	GAAGAC	1 cut(s)	944
Bbv12I	GWGCWC	1 cut(s)	734
BbvI	GCAGC	2 cut(s)	758, 992
BceAI	ACGGC	1 cut(s)	738
BcgI	CGANNNNNNTGC	2 cut(s)	714, 748
BciT130I	CCWGG	3 cut(s)	291, 519, 701
BciVI	GTATCC	1 cut(s)	1042
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	614, 925
BfmI	CTRYAG	4 cut(s)	450, 456, 964, 1085
BfuAI	ACCTGC	1 cut(s)	548
BfuI	GTATCC	1 cut(s)	1042
BisI	GCNGC	2 cut(s)	747, 981
BlsI	GCNGC	2 cut(s)	748, 982
BmcAI	AGTACT	1 cut(s)	42
Bme1390I	CCNGG	4 cut(s)	182, 291, 519, 701
BmeT110I	CYCGRG	2 cut(s)	733, 901
BmiI	GGNNCC	4 cut(s)	249, 353, 920, 1002
BmrFI	CCNGG	4 cut(s)	182, 291, 519, 701
BmrI	ACTGGG	1 cut(s)	492
BmsI	GCATC	1 cut(s)	407
BmuI	ACTGGG	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	944
BpmI	CTGGAG	2 cut(s)	139, 540
BpuMI	CCSGG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	688
BsaJI	CCNNGG	2 cut(s)	900, 1004
BsaWI	WCCGGW	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	2 cut(s)	906, 967
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	4 cut(s)	487, 628, 820, 920
Bse3DI	GCAATG	1 cut(s)	1079
Bse8I	GATNNNNATC	1 cut(s)	688
BseBI	CCWGG	3 cut(s)	291, 519, 701
BseDI	CCNNGG	2 cut(s)	900, 1004
BseGI	GGATG	2 cut(s)	136, 622
BseJI	GATNNNNATC	1 cut(s)	688
BseLI	CCNNNNNNNGG	2 cut(s)	906, 967
BseMI	GCAATG	1 cut(s)	1079
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	4 cut(s)	487, 628, 820, 920
BseRI	GAGGAG	4 cut(s)	222, 225, 990, 1043
BseXI	GCAGC	2 cut(s)	758, 992
BseYI	CCCAGC	1 cut(s)	111
BshFI	GGCC	1 cut(s)	1039
BshNI	GGYRCC	1 cut(s)	1000
BshTI	ACCGGT	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	734
BsiHKCI	CYCGRG	2 cut(s)	733, 901
BsiSI	CCGG	2 cut(s)	181, 417
BslFI	GGGAC	3 cut(s)	422, 610, 773
BslI	CCNNNNNNNGG	2 cut(s)	906, 967
BsmAI	GTCTC	2 cut(s)	614, 925
BsmFI	GGGAC	3 cut(s)	422, 610, 773
BsmI	GAATGC	1 cut(s)	537
BsnI	GGCC	1 cut(s)	1039
BsoBI	CYCGRG	2 cut(s)	733, 901
Bsp1286I	GDGCHC	1 cut(s)	734
Bsp143I	GATC	4 cut(s)	486, 626, 683, 689
Bsp19I	CCATGG	1 cut(s)	1004
BspANI	GGCC	1 cut(s)	1039
BspCNI	CTCAG	1 cut(s)	515
BspLI	GGNNCC	4 cut(s)	249, 353, 920, 1002
BspMAI	CTGCAG	1 cut(s)	968
BspMI	ACCTGC	1 cut(s)	548
BspPI	GGATC	2 cut(s)	494, 634
BspQI	GCTCTTC	1 cut(s)	829
BspT107I	GGYRCC	1 cut(s)	1000
BsrDI	GCAATG	1 cut(s)	1079
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	4 cut(s)	487, 628, 820, 920
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	2 cut(s)	900, 1004
BssMI	GATC	4 cut(s)	486, 626, 683, 689
BssT1I	CCWWGG	1 cut(s)	1004
Bst2UI	CCWGG	3 cut(s)	291, 519, 701
Bst4CI	ACNGT	5 cut(s)	226, 376, 707, 875, 943
Bst6I	CTCTTC	2 cut(s)	829, 985
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	2 cut(s)	502, 548
BstDSI	CCRYGG	1 cut(s)	1004
BstF5I	GGATG	2 cut(s)	136, 622
BstKTI	GATC	4 cut(s)	489, 629, 686, 692
BstMAI	GTCTC	2 cut(s)	614, 925
BstMBI	GATC	4 cut(s)	486, 626, 683, 689
BstMWI	GCNNNNNNNGC	4 cut(s)	452, 461, 746, 845
BstNI	CCWGG	3 cut(s)	291, 519, 701
BstSCI	CCNGG	4 cut(s)	180, 289, 517, 699
BstSFI	CTRYAG	4 cut(s)	450, 456, 964, 1085
BstV1I	GCAGC	2 cut(s)	758, 992
BstV2I	GAAGAC	1 cut(s)	944
BsuI	GTATCC	1 cut(s)	1042
BsuRI	GGCC	1 cut(s)	1039
BtgI	CCRYGG	1 cut(s)	1004
BtsCI	GGATG	2 cut(s)	136, 622
BtsI	GCAGTG	3 cut(s)	546, 867, 961
BtsIMutI	CAGTG	4 cut(s)	510, 546, 867, 961
BveI	ACCTGC	1 cut(s)	548
Cac8I	GCNNGC	1 cut(s)	537
CaiI	CAGNNNCTG	1 cut(s)	518
Cfr10I	RCCGGY	1 cut(s)	416
Csp6I	GTAC	4 cut(s)	41, 311, 317, 515
CspAI	ACCGGT	1 cut(s)	416
CviAII	CATG	2 cut(s)	571, 1005
CviQI	GTAC	4 cut(s)	41, 311, 317, 515
DdeI	CTNAG	2 cut(s)	502, 548
DpnI	GATC	4 cut(s)	488, 628, 685, 691
DpnII	GATC	4 cut(s)	486, 626, 683, 689
Eam1104I	CTCTTC	2 cut(s)	829, 985
EarI	CTCTTC	2 cut(s)	829, 985
Ecl136II	GAGCTC	1 cut(s)	732
Eco130I	CCWWGG	1 cut(s)	1004
Eco147I	AGGCCT	1 cut(s)	1039
Eco24I	GRGCYC	1 cut(s)	734
Eco53kI	GAGCTC	1 cut(s)	732
Eco57I	CTGAAG	1 cut(s)	21
Eco88I	CYCGRG	2 cut(s)	733, 901
EcoICRI	GAGCTC	1 cut(s)	732
EcoRI	GAATTC	1 cut(s)	164
EcoRII	CCWGG	3 cut(s)	289, 517, 699
EcoT14I	CCWWGG	1 cut(s)	1004
EcoT38I	GRGCYC	1 cut(s)	734
ErhI	CCWWGG	1 cut(s)	1004
FaeI	CATG	2 cut(s)	574, 1008
FaqI	GGGAC	3 cut(s)	422, 610, 773
FatI	CATG	2 cut(s)	570, 1004
FauNDI	CATATG	2 cut(s)	91, 769
FblI	GTMKAC	1 cut(s)	666
Fnu4HI	GCNGC	2 cut(s)	747, 981
FokI	GGATG	2 cut(s)	143, 629
FriOI	GRGCYC	1 cut(s)	734
Fsp4HI	GCNGC	2 cut(s)	747, 981
GluI	GCNGC	2 cut(s)	747, 981
GsaI	CCCAGC	1 cut(s)	115
GsuI	CTGGAG	2 cut(s)	139, 540
HaeIII	GGCC	1 cut(s)	1039
HapII	CCGG	2 cut(s)	181, 417
Hin1II	CATG	2 cut(s)	574, 1008
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	4 cut(s)	215, 270, 358, 761
HpaI	GTTAAC	1 cut(s)	172
HpaII	CCGG	2 cut(s)	181, 417
HphI	GGTGA	2 cut(s)	572, 756
Hpy166II	GTNNAC	3 cut(s)	172, 196, 667
Hpy188I	TCNGA	3 cut(s)	370, 403, 424
Hpy188III	TCNNGA	7 cut(s)	156, 251, 496, 687, 735, 855, 1046
Hpy8I	GTNNAC	3 cut(s)	172, 196, 667
Hpy99I	CGWCG	1 cut(s)	887
HpyAV	CCTTC	3 cut(s)	118, 133, 301
HpyCH4III	ACNGT	5 cut(s)	226, 376, 707, 875, 943
HpyCH4V	TGCA	7 cut(s)	95, 479, 512, 535, 557, 801, 966
HpyF10VI	GCNNNNNNNGC	4 cut(s)	452, 461, 746, 845
HpyF3I	CTNAG	2 cut(s)	502, 548
Hsp92II	CATG	2 cut(s)	574, 1008
KspAI	GTTAAC	1 cut(s)	172
Kzo9I	GATC	4 cut(s)	486, 626, 683, 689
LguI	GCTCTTC	1 cut(s)	829
LmnI	GCTCC	5 cut(s)	86, 233, 737, 845, 977
Lsp1109I	GCAGC	2 cut(s)	758, 992
LweI	GCATC	1 cut(s)	407
MaeIII	GTNAC	2 cut(s)	647, 911
MalI	GATC	4 cut(s)	488, 628, 685, 691
MboI	GATC	4 cut(s)	486, 626, 683, 689
MboII	GAAGA	7 cut(s)	278, 568, 704, 785, 846, 949, 1002
MhlI	GDGCHC	1 cut(s)	734
MluCI	AATT	9 cut(s)	5, 100, 164, 276, 294, 378, 552, 947, 1055
MlyI	GAGTC	2 cut(s)	279, 755
MroXI	GAANNNNTTC	2 cut(s)	445, 1016
MseI	TTAA	2 cut(s)	171, 1080
MslI	CAYNNNNRTG	1 cut(s)	191
MspI	CCGG	2 cut(s)	181, 417
MspR9I	CCNGG	4 cut(s)	182, 291, 519, 701
Mva1269I	GAATGC	1 cut(s)	537
MvaI	CCWGG	3 cut(s)	291, 519, 701
MwoI	GCNNNNNNNGC	4 cut(s)	452, 461, 746, 845
NciI	CCSGG	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	1004
NdeI	CATATG	2 cut(s)	91, 769
NdeII	GATC	4 cut(s)	486, 626, 683, 689
NlaIII	CATG	2 cut(s)	574, 1008
NlaIV	GGNNCC	4 cut(s)	249, 353, 920, 1002
NmuCI	GTSAC	2 cut(s)	647, 911
PaqCI	CACCTGC	1 cut(s)	548
PceI	AGGCCT	1 cut(s)	1039
PciSI	GCTCTTC	1 cut(s)	829
PctI	GAATGC	1 cut(s)	537
PdmI	GAANNNNTTC	2 cut(s)	445, 1016
PfeI	GAWTC	2 cut(s)	215, 358
PflFI	GACNNNGTC	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	289
PinAI	ACCGGT	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	748, 982
PleI	GAGTC	2 cut(s)	278, 755
PpsI	GAGTC	2 cut(s)	278, 755
Psp124BI	GAGCTC	1 cut(s)	734
Psp6I	CCWGG	3 cut(s)	289, 517, 699
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	3 cut(s)	289, 517, 699
PspN4I	GGNNCC	4 cut(s)	249, 353, 920, 1002
PstI	CTGCAG	1 cut(s)	968
PstNI	CAGNNNCTG	1 cut(s)	518
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	4 cut(s)	42, 312, 318, 516
RsaNI	GTAC	4 cut(s)	41, 311, 317, 515
RseI	CAYNNNNRTG	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	734
SapI	GCTCTTC	1 cut(s)	829
SaqAI	TTAA	2 cut(s)	171, 1080
SatI	GCNGC	2 cut(s)	747, 981
Sau3AI	GATC	4 cut(s)	486, 626, 683, 689
ScaI	AGTACT	1 cut(s)	42
SchI	GAGTC	2 cut(s)	279, 755
ScrFI	CCNGG	4 cut(s)	182, 291, 519, 701
SduI	GDGCHC	1 cut(s)	734
SfaNI	GCATC	1 cut(s)	407
SfcI	CTRYAG	4 cut(s)	450, 456, 964, 1085
SmiMI	CAYNNNNRTG	1 cut(s)	191
Sse9I	AATT	9 cut(s)	5, 100, 164, 276, 294, 378, 552, 947, 1055
SseBI	AGGCCT	1 cut(s)	1039
SstI	GAGCTC	1 cut(s)	734
StuI	AGGCCT	1 cut(s)	1039
StyD4I	CCNGG	4 cut(s)	180, 289, 517, 699
StyI	CCWWGG	1 cut(s)	1004
TaaI	ACNGT	5 cut(s)	226, 376, 707, 875, 943
TaqI	TCGA	2 cut(s)	495, 882
TasI	AATT	9 cut(s)	5, 100, 164, 276, 294, 378, 552, 947, 1055
TatI	WGTACW	1 cut(s)	40
TfiI	GAWTC	2 cut(s)	215, 358
Tru1I	TTAA	2 cut(s)	171, 1080
Tru9I	TTAA	2 cut(s)	171, 1080
TscAI	CASTG	4 cut(s)	510, 546, 867, 968
TseFI	GTSAC	2 cut(s)	647, 911
TseI	GCWGC	2 cut(s)	746, 980
Tsp45I	GTSAC	2 cut(s)	647, 911
TspDTI	ATGAA	6 cut(s)	177, 334, 661, 786, 809, 1048
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	4 cut(s)	510, 546, 867, 968
Tth111I	GACNNNGTC	1 cut(s)	269
XapI	RAATTY	5 cut(s)	164, 276, 294, 947, 1055
XmiI	GTMKAC	1 cut(s)	666
XmnI	GAANNNNTTC	2 cut(s)	445, 1016
ZrmI	AGTACT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.