Cleavage site for pathogenic type III effector avirulence factor Avr
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G19473 AT5G19473 |
| fragaria_vesca | FvH4_3g27760 FvH4_3g27760 |
| malus_domestica | MD03G1164700.v1.1 |
| prunus_persica | Prupe.4G264200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0050361 |
| rosa_laevigata | RLG00000034699 |
| rosa_multiflora | Rmu_sc0005060.1_g000015 |
| rosa_roxburghii | Rroxscaffold_1G00030580 |
| rosa_rugosa | Rorug05G0260100 Rorug05G0260200 Rorug05G0260300 Rorug05G0260400 |
| rosa_samantha | Rh5AG332100 Rh5BG342400 Rh5CG369600 Rh5DG355200 |
| rosa_wichuraiana | Rw5G031390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 227 |
| AclWI | GGATC | 2 cut(s) | 66, 68 |
| AcsI | RAATTY | 1 cut(s) | 179 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 47 |
| AgsI | TTSAA | 1 cut(s) | 151 |
| AjnI | CCWGG | 1 cut(s) | 162 |
| AleI | CACNNNNGTG | 1 cut(s) | 92 |
| AluBI | AGCT | 1 cut(s) | 107 |
| AluI | AGCT | 1 cut(s) | 107 |
| AlwI | GGATC | 2 cut(s) | 66, 68 |
| AoxI | GGCC | 2 cut(s) | 67, 275 |
| ApeKI | GCWGC | 1 cut(s) | 188 |
| ApoI | RAATTY | 1 cut(s) | 179 |
| AspLEI | GCGC | 1 cut(s) | 156 |
| AspS9I | GGNCC | 1 cut(s) | 68 |
| AsuHPI | GGTGA | 1 cut(s) | 91 |
| BauI | CACGAG | 1 cut(s) | 108 |
| BbvI | GCAGC | 1 cut(s) | 175 |
| BccI | CCATC | 1 cut(s) | 48 |
| BciT130I | CCWGG | 1 cut(s) | 164 |
| BisI | GCNGC | 1 cut(s) | 189 |
| BlsI | GCNGC | 1 cut(s) | 190 |
| Bme1390I | CCNGG | 1 cut(s) | 164 |
| BmgT120I | GGNCC | 1 cut(s) | 68 |
| BmrFI | CCNGG | 1 cut(s) | 164 |
| BsaJI | CCNNGG | 2 cut(s) | 90, 163 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 47 |
| BseBI | CCWGG | 1 cut(s) | 164 |
| BseDI | CCNNGG | 2 cut(s) | 90, 163 |
| BseGI | GGATG | 1 cut(s) | 59 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 47 |
| BseMII | CTCAG | 2 cut(s) | 56, 135 |
| BseRI | GAGGAG | 1 cut(s) | 29 |
| BseXI | GCAGC | 1 cut(s) | 175 |
| BshFI | GGCC | 2 cut(s) | 69, 277 |
| BslFI | GGGAC | 1 cut(s) | 23 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 47 |
| BsmFI | GGGAC | 1 cut(s) | 23 |
| BsnI | GGCC | 2 cut(s) | 69, 277 |
| Bsp143I | GATC | 2 cut(s) | 58, 73 |
| BspANI | GGCC | 2 cut(s) | 69, 277 |
| BspCNI | CTCAG | 2 cut(s) | 55, 136 |
| BspHI | TCATGA | 1 cut(s) | 231 |
| BspPI | GGATC | 2 cut(s) | 66, 68 |
| BssECI | CCNNGG | 2 cut(s) | 90, 163 |
| BssMI | GATC | 2 cut(s) | 58, 73 |
| BssSI | CACGAG | 1 cut(s) | 108 |
| Bst2BI | CACGAG | 1 cut(s) | 108 |
| Bst2UI | CCWGG | 1 cut(s) | 164 |
| Bst4CI | ACNGT | 1 cut(s) | 91 |
| BstDEI | CTNAG | 2 cut(s) | 42, 144 |
| BstDSI | CCRYGG | 1 cut(s) | 90 |
| BstF5I | GGATG | 1 cut(s) | 59 |
| BstHHI | GCGC | 1 cut(s) | 156 |
| BstKTI | GATC | 2 cut(s) | 61, 76 |
| BstMBI | GATC | 2 cut(s) | 58, 73 |
| BstNI | CCWGG | 1 cut(s) | 164 |
| BstSCI | CCNGG | 1 cut(s) | 162 |
| BstV1I | GCAGC | 1 cut(s) | 175 |
| BstX2I | RGATCY | 1 cut(s) | 73 |
| BstYI | RGATCY | 1 cut(s) | 73 |
| BsuRI | GGCC | 2 cut(s) | 69, 277 |
| BtgI | CCRYGG | 1 cut(s) | 90 |
| BtsCI | GGATG | 1 cut(s) | 59 |
| CciI | TCATGA | 1 cut(s) | 231 |
| CfoI | GCGC | 1 cut(s) | 156 |
| Cfr13I | GGNCC | 1 cut(s) | 68 |
| CviAII | CATG | 2 cut(s) | 203, 232 |
| CviJI | RGCY | 5 cut(s) | 69, 107, 162, 188, 277 |
| CviKI_1 | RGCY | 5 cut(s) | 69, 107, 162, 188, 277 |
| DdeI | CTNAG | 2 cut(s) | 42, 144 |
| DpnI | GATC | 2 cut(s) | 60, 75 |
| DpnII | GATC | 2 cut(s) | 58, 73 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 227 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 227 |
| Eco147I | AGGCCT | 1 cut(s) | 277 |
| EcoRI | GAATTC | 1 cut(s) | 179 |
| EcoRII | CCWGG | 1 cut(s) | 162 |
| FaeI | CATG | 2 cut(s) | 206, 235 |
| FaiI | YATR | 3 cut(s) | 204, 233, 260 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 122, 154 |
| FaqI | GGGAC | 1 cut(s) | 23 |
| FatI | CATG | 2 cut(s) | 202, 231 |
| Fnu4HI | GCNGC | 1 cut(s) | 189 |
| FokI | GGATG | 1 cut(s) | 66 |
| Fsp4HI | GCNGC | 1 cut(s) | 189 |
| GlaI | GCGC | 1 cut(s) | 155 |
| GluI | GCNGC | 1 cut(s) | 189 |
| HaeIII | GGCC | 2 cut(s) | 69, 277 |
| HhaI | GCGC | 1 cut(s) | 156 |
| Hin1II | CATG | 2 cut(s) | 206, 235 |
| Hin6I | GCGC | 1 cut(s) | 154 |
| HinP1I | GCGC | 1 cut(s) | 154 |
| HinfI | GANTC | 2 cut(s) | 224, 247 |
| HphI | GGTGA | 1 cut(s) | 91 |
| Hpy166II | GTNNAC | 1 cut(s) | 99 |
| Hpy188I | TCNGA | 3 cut(s) | 30, 50, 252 |
| Hpy188III | TCNNGA | 1 cut(s) | 232 |
| Hpy8I | GTNNAC | 1 cut(s) | 99 |
| HpyCH4III | ACNGT | 1 cut(s) | 91 |
| HpyF3I | CTNAG | 2 cut(s) | 42, 144 |
| Hsp92II | CATG | 2 cut(s) | 206, 235 |
| HspAI | GCGC | 1 cut(s) | 154 |
| Kzo9I | GATC | 2 cut(s) | 58, 73 |
| LpnPI | CCDG | 5 cut(s) | 84, 103, 149, 161, 176 |
| Lsp1109I | GCAGC | 1 cut(s) | 175 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MalI | GATC | 2 cut(s) | 60, 75 |
| MboI | GATC | 2 cut(s) | 58, 73 |
| MflI | RGATCY | 1 cut(s) | 73 |
| MluCI | AATT | 2 cut(s) | 179, 262 |
| MnlI | CCTC | 5 cut(s) | 7, 24, 44, 51, 228 |
| MslI | CAYNNNNRTG | 1 cut(s) | 92 |
| MspR9I | CCNGG | 1 cut(s) | 164 |
| MvaI | CCWGG | 1 cut(s) | 164 |
| NdeII | GATC | 2 cut(s) | 58, 73 |
| NlaIII | CATG | 2 cut(s) | 206, 235 |
| NmuCI | GTSAC | 1 cut(s) | 5 |
| OliI | CACNNNNGTG | 1 cut(s) | 92 |
| PagI | TCATGA | 1 cut(s) | 231 |
| PceI | AGGCCT | 1 cut(s) | 277 |
| PfeI | GAWTC | 2 cut(s) | 224, 247 |
| PkrI | GCNGC | 1 cut(s) | 190 |
| Psp6I | CCWGG | 1 cut(s) | 162 |
| PspGI | CCWGG | 1 cut(s) | 162 |
| PspPI | GGNCC | 1 cut(s) | 68 |
| PsuI | RGATCY | 1 cut(s) | 73 |
| RseI | CAYNNNNRTG | 1 cut(s) | 92 |
| SatI | GCNGC | 1 cut(s) | 189 |
| Sau3AI | GATC | 2 cut(s) | 58, 73 |
| Sau96I | GGNCC | 1 cut(s) | 68 |
| ScrFI | CCNGG | 1 cut(s) | 164 |
| SetI | ASST | 3 cut(s) | 35, 109, 257 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 92 |
| Sse9I | AATT | 2 cut(s) | 179, 262 |
| SseBI | AGGCCT | 1 cut(s) | 277 |
| StuI | AGGCCT | 1 cut(s) | 277 |
| StyD4I | CCNGG | 1 cut(s) | 162 |
| TaaI | ACNGT | 1 cut(s) | 91 |
| TasI | AATT | 2 cut(s) | 179, 262 |
| TfiI | GAWTC | 2 cut(s) | 224, 247 |
| TseFI | GTSAC | 1 cut(s) | 5 |
| TseI | GCWGC | 1 cut(s) | 188 |
| Tsp45I | GTSAC | 1 cut(s) | 5 |
| TspDTI | ATGAA | 1 cut(s) | 186 |
| XapI | RAATTY | 1 cut(s) | 179 |