Rmu_sc0005060.1_g000015

RPM1-interacting protein 4 (RIN4) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005060.1
OG0012034
Physical Location & Seq
Forward (+)
103306 .. 106592
3287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005060.1_g000015.1.cds

Sequence Viewer

Length: 459 bp
atgagcggcggagctagcttctcccacgcaccagcggcggcgcgtgaagcgcgtgcggcggctctgggcttgctgagtctgacggtggtgtcgatatggcaaggtgatggtcggaaatcgatggaggttgagaggcagcaacttcgcaaccttgggtggtcgcggggaaatggtcggaagtcaattcctcaatttggaggatgggaacaaaacgccacagtagagcctaccagctatactgtggtgtttagtcaagctcgtgctaaccggaagcaaaataagactgacttgaccgagttcaagcgcaacagccttggaaatgaacatgaattaatggctgctcaaggccatcatgatcatcgtcatcattctgatgattctgttacgacgaaaaagacatcatctccatttaattttcttttgtctctcttttcatgcagaggaaaaagacaattctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AvrRpt-cleavage

Protein Analysis

152

Amino Acids

16.9

Weight (kDa)

10.26

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19473 AT5G19473
fragaria_vesca FvH4_3g27760 FvH4_3g27760
malus_domestica MD03G1164700.v1.1
prunus_persica Prupe.4G264200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0050361
rosa_laevigata RLG00000034699
rosa_multiflora Rmu_sc0005060.1_g000015
rosa_roxburghii Rroxscaffold_1G00030580
rosa_rugosa Rorug05G0260100 Rorug05G0260200 Rorug05G0260300 Rorug05G0260400
rosa_samantha Rh5AG332100 Rh5BG342400 Rh5CG369600 Rh5DG355200
rosa_wichuraiana Rw5G031390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 88
AccBSI CCGCTC 1 cut(s) 6
AccII CGCG 3 cut(s) 43, 52, 163
AciI CCGC 7 cut(s) 6, 9, 35, 38, 56, 59, 163
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 301
AluBI AGCT 4 cut(s) 14, 18, 234, 257
AluI AGCT 4 cut(s) 14, 18, 234, 257
Alw26I GTCTC 1 cut(s) 429
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 2 cut(s) 136, 338
AseI ATTAAT 1 cut(s) 332
AspLEI GCGC 3 cut(s) 43, 52, 306
AsuHPI GGTGA 1 cut(s) 116
AsuNHI GCTAGC 1 cut(s) 14
BauI CACGAG 1 cut(s) 258
BbvI GCAGC 2 cut(s) 148, 325
BccI CCATC 4 cut(s) 101, 115, 195, 357
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 1 cut(s) 15
BisI GCNGC 7 cut(s) 7, 36, 39, 57, 60, 137, 339
BlsI GCNGC 7 cut(s) 8, 37, 40, 58, 61, 138, 340
BmtI GCTAGC 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 327
Bsa29I ATCGAT 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 151, 313
BsaWI WCCGGW 1 cut(s) 267
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
Bsc4I CCNNNNNNNGG 1 cut(s) 194
BseCI ATCGAT 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 151, 313
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 65
BseXI GCAGC 2 cut(s) 148, 325
Bsh1236I CGCG 3 cut(s) 43, 52, 163
BshFI GGCC 1 cut(s) 348
BshVI ATCGAT 1 cut(s) 119
BsiSI CCGG 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 429
BsnI GGCC 1 cut(s) 348
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 7 cut(s) 6, 9, 35, 38, 56, 59, 163
BspANI GGCC 1 cut(s) 348
BspCNI CTCAG 1 cut(s) 66
BspDI ATCGAT 1 cut(s) 119
BspFNI CGCG 3 cut(s) 43, 52, 163
BspHI TCATGA 1 cut(s) 352
BspOI GCTAGC 1 cut(s) 18
BsrBI CCGCTC 1 cut(s) 6
BssECI CCNNGG 2 cut(s) 151, 313
BssMI GATC 1 cut(s) 355
BssSI CACGAG 1 cut(s) 258
BssT1I CCWWGG 2 cut(s) 151, 313
Bst2BI CACGAG 1 cut(s) 258
Bst4CI ACNGT 3 cut(s) 85, 220, 241
BstC8I GCNNGC 3 cut(s) 16, 54, 71
BstDEI CTNAG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 206
BstFNI CGCG 3 cut(s) 43, 52, 163
BstHHI GCGC 3 cut(s) 43, 52, 306
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 5 cut(s) 15, 35, 47, 49, 56
BstUI CGCG 3 cut(s) 43, 52, 163
BstV1I GCAGC 2 cut(s) 148, 325
Bsu15I ATCGAT 1 cut(s) 119
BsuRI GGCC 1 cut(s) 348
BsuTUI ATCGAT 1 cut(s) 119
BtsCI GGATG 1 cut(s) 206
Cac8I GCNNGC 3 cut(s) 16, 54, 71
CciI TCATGA 1 cut(s) 352
CfoI GCGC 3 cut(s) 43, 52, 306
ClaI ATCGAT 1 cut(s) 119
CviAII CATG 3 cut(s) 326, 353, 435
DdeI CTNAG 1 cut(s) 74
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
DrdI GACNNNNNNGTC 1 cut(s) 88
DseDI GACNNNNNNGTC 1 cut(s) 88
EciI GGCGGA 1 cut(s) 24
Eco130I CCWWGG 2 cut(s) 151, 313
EcoT14I CCWWGG 2 cut(s) 151, 313
ErhI CCWWGG 2 cut(s) 151, 313
FaeI CATG 3 cut(s) 329, 356, 438
FaiI YATR 5 cut(s) 97, 237, 327, 354, 436
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 3 cut(s) 325, 352, 434
FauI CCCGC 1 cut(s) 156
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 7 cut(s) 7, 36, 39, 57, 60, 137, 339
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 7 cut(s) 7, 36, 39, 57, 60, 137, 339
FspBI CTAG 1 cut(s) 15
GlaI GCGC 3 cut(s) 42, 51, 305
GluI GCNGC 7 cut(s) 7, 36, 39, 57, 60, 137, 339
HaeIII GGCC 1 cut(s) 348
HapII CCGG 1 cut(s) 268
HhaI GCGC 3 cut(s) 43, 52, 306
Hin1II CATG 3 cut(s) 329, 356, 438
Hin6I GCGC 3 cut(s) 41, 50, 304
HinP1I GCGC 3 cut(s) 41, 50, 304
HinfI GANTC 2 cut(s) 76, 377
HpaII CCGG 1 cut(s) 268
HphI GGTGA 1 cut(s) 116
Hpy188I TCNGA 5 cut(s) 81, 114, 177, 373, 458
Hpy188III TCNNGA 1 cut(s) 353
Hpy99I CGWCG 1 cut(s) 391
HpyCH4III ACNGT 3 cut(s) 85, 220, 241
HpyCH4V TGCA 1 cut(s) 438
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 35, 47, 49, 56
HpyF3I CTNAG 1 cut(s) 74
Hsp92II CATG 3 cut(s) 329, 356, 438
HspAI GCGC 3 cut(s) 41, 50, 304
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 4 cut(s) 45, 50, 244, 281
Lsp1109I GCAGC 2 cut(s) 148, 325
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 382
MalI GATC 1 cut(s) 357
MbiI CCGCTC 1 cut(s) 6
MboI GATC 1 cut(s) 355
MluCI AATT 5 cut(s) 183, 191, 329, 412, 452
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 2 cut(s) 92, 155
MnlI CCTC 5 cut(s) 118, 126, 191, 198, 434
MseI TTAA 2 cut(s) 332, 411
MslI CAYNNNNRTG 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 1 cut(s) 268
MvnI CGCG 3 cut(s) 43, 52, 163
MwoI GCNNNNNNNGC 5 cut(s) 15, 35, 47, 49, 56
NdeII GATC 1 cut(s) 355
NheI GCTAGC 1 cut(s) 14
NlaIII CATG 3 cut(s) 329, 356, 438
PagI TCATGA 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 7 cut(s) 8, 37, 40, 58, 61, 138, 340
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PshBI ATTAAT 1 cut(s) 332
RseI CAYNNNNRTG 1 cut(s) 372
SaqAI TTAA 2 cut(s) 332, 411
SatI GCNGC 7 cut(s) 7, 36, 39, 57, 60, 137, 339
Sau3AI GATC 1 cut(s) 355
SchI GAGTC 1 cut(s) 85
SetI ASST 7 cut(s) 16, 20, 106, 129, 153, 236, 259
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 342
SmoI CTYRAG 1 cut(s) 342
Sse9I AATT 5 cut(s) 183, 191, 329, 412, 452
SsiI CCGC 7 cut(s) 6, 9, 35, 38, 56, 59, 163
SspMI CTAG 1 cut(s) 15
StyI CCWWGG 2 cut(s) 151, 313
TaaI ACNGT 3 cut(s) 85, 220, 241
TaqI TCGA 2 cut(s) 92, 119
TaqII GACCGA 1 cut(s) 308
TasI AATT 5 cut(s) 183, 191, 329, 412, 452
TauI GCSGC 5 cut(s) 9, 38, 41, 59, 62
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 2 cut(s) 332, 411
Tru9I TTAA 2 cut(s) 332, 411
TseI GCWGC 2 cut(s) 136, 338
TspDTI ATGAA 3 cut(s) 336, 342, 423
VspI ATTAAT 1 cut(s) 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.