RLG00000034699

RPM1-interacting protein 4 (RIN4) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012034
Physical Location & Seq
Forward (+)
51951646 .. 51952055
410 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034699

Sequence Viewer

Length: 321 bp
ATGATAAGGGGTGTATTATATTTGCAGGGAAATGGTCGGAAGTCAATTCCTCAATTTGGAGGATGGGAACAAAACGCCGCAGTAGAGCCTACCAGCTATACTGTGGTGTTTAGTCAAGCTCGTGCTAACCGGAAGCAAAATAAGACTGACTTGACTGAGTTCAAGCGCAACAGCCTTGGAAATGAACAGGAATTAATGGCTGCTCAAGCCCATCATGATCATCGTCATCATTCTGATGATTCTGTTACGACGAAAAAGACATCATCTCCATTTAATTTTCTTTTGTCTCTCTTTTCATGCAGAGGAAAAAGACAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AvrRpt-cleavage

Protein Analysis

107

Amino Acids

12.08

Weight (kDa)

9.91

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AvrRpt-cleavage PF05627 12 - 45 6.6e-10 Cleavage site for pathogenic type III effector avirulence factor Avr
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19473 AT5G19473
fragaria_vesca FvH4_3g27760 FvH4_3g27760
malus_domestica MD03G1164700.v1.1
prunus_persica Prupe.4G264200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0050361
rosa_laevigata RLG00000034699
rosa_multiflora Rmu_sc0005060.1_g000015
rosa_roxburghii Rroxscaffold_1G00030580
rosa_rugosa Rorug05G0260100 Rorug05G0260200 Rorug05G0260300 Rorug05G0260400
rosa_samantha Rh5AG332100 Rh5BG342400 Rh5CG369600 Rh5DG355200
rosa_wichuraiana Rw5G031390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 2 cut(s) 96, 119
AluI AGCT 2 cut(s) 96, 119
Alw26I GTCTC 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 200
AseI ATTAAT 1 cut(s) 194
AspLEI GCGC 1 cut(s) 168
BauI CACGAG 1 cut(s) 120
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 57, 219
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 291
BisI GCNGC 2 cut(s) 78, 201
BlsI GCNGC 2 cut(s) 79, 202
BpuEI CTTGAG 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 175
BsaWI WCCGGW 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 250, 280
Bsc4I CCNNNNNNNGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 291
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 148
BspHI TCATGA 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 1 cut(s) 217
BssSI CACGAG 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 175
Bst2BI CACGAG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 68
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 68
CciI TCATGA 1 cut(s) 214
CfoI GCGC 1 cut(s) 168
CviAII CATG 2 cut(s) 215, 297
CviJI RGCY 6 cut(s) 88, 96, 119, 174, 200, 209
CviKI_1 RGCY 6 cut(s) 88, 96, 119, 174, 200, 209
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 2 cut(s) 218, 300
FaiI YATR 4 cut(s) 19, 99, 216, 298
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 2 cut(s) 214, 296
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 2 cut(s) 78, 201
FokI GGATG 1 cut(s) 75
Fsp4HI GCNGC 2 cut(s) 78, 201
GlaI GCGC 1 cut(s) 167
GluI GCNGC 2 cut(s) 78, 201
HapII CCGG 1 cut(s) 130
HhaI GCGC 1 cut(s) 168
Hin1II CATG 2 cut(s) 218, 300
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HinfI GANTC 1 cut(s) 239
HpaII CCGG 1 cut(s) 130
Hpy188I TCNGA 3 cut(s) 39, 235, 320
Hpy188III TCNNGA 1 cut(s) 215
Hpy99I CGWCG 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 2 cut(s) 25, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 2 cut(s) 218, 300
HspAI GCGC 1 cut(s) 166
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 1 cut(s) 217
LpnPI CCDG 4 cut(s) 11, 106, 143, 173
Lsp1109I GCAGC 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MluCI AATT 5 cut(s) 45, 53, 191, 274, 314
MmeI TCCRAC 1 cut(s) 17
MnlI CCTC 3 cut(s) 53, 60, 296
MseI TTAA 2 cut(s) 194, 273
MslI CAYNNNNRTG 1 cut(s) 234
MspI CCGG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 1 cut(s) 217
NlaIII CATG 2 cut(s) 218, 300
PagI TCATGA 1 cut(s) 214
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 2 cut(s) 79, 202
PshBI ATTAAT 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 2 cut(s) 194, 273
SatI GCNGC 2 cut(s) 78, 201
Sau3AI GATC 1 cut(s) 217
SetI ASST 2 cut(s) 98, 121
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
Sse9I AATT 5 cut(s) 45, 53, 191, 274, 314
SsiI CCGC 1 cut(s) 78
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 103
TasI AATT 5 cut(s) 45, 53, 191, 274, 314
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 2 cut(s) 194, 273
Tru9I TTAA 2 cut(s) 194, 273
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 198, 285
VspI ATTAAT 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.