Cleavage site for pathogenic type III effector avirulence factor Avr
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G19473 AT5G19473 |
| fragaria_vesca | FvH4_3g27760 FvH4_3g27760 |
| malus_domestica | MD03G1164700.v1.1 |
| prunus_persica | Prupe.4G264200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0050361 |
| rosa_laevigata | RLG00000034699 |
| rosa_multiflora | Rmu_sc0005060.1_g000015 |
| rosa_roxburghii | Rroxscaffold_1G00030580 |
| rosa_rugosa | Rorug05G0260100 Rorug05G0260200 Rorug05G0260300 Rorug05G0260400 |
| rosa_samantha | Rh5AG332100 Rh5BG342400 Rh5CG369600 Rh5DG355200 |
| rosa_wichuraiana | Rw5G031390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 582 |
| AciI | CCGC | 1 cut(s) | 407 |
| AclWI | GGATC | 1 cut(s) | 405 |
| AcsI | RAATTY | 2 cut(s) | 184, 547 |
| AcuI | CTGAAG | 2 cut(s) | 55, 77 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 17, 226, 595, 643 |
| AflIII | ACRYGT | 1 cut(s) | 480 |
| AgsI | TTSAA | 3 cut(s) | 272, 527, 662 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 285, 317 |
| AluBI | AGCT | 1 cut(s) | 157 |
| AluI | AGCT | 1 cut(s) | 157 |
| Alw26I | GTCTC | 1 cut(s) | 23 |
| AlwI | GGATC | 1 cut(s) | 405 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 85 |
| AoxI | GGCC | 1 cut(s) | 438 |
| ApoI | RAATTY | 2 cut(s) | 184, 547 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 276 |
| AsuHPI | GGTGA | 1 cut(s) | 272 |
| BbsI | GAAGAC | 2 cut(s) | 451, 570 |
| BciVI | GTATCC | 1 cut(s) | 421 |
| BcoDI | GTCTC | 1 cut(s) | 23 |
| BfaI | CTAG | 5 cut(s) | 44, 114, 338, 465, 669 |
| BfmI | CTRYAG | 1 cut(s) | 420 |
| BfuI | GTATCC | 1 cut(s) | 421 |
| BmiI | GGNNCC | 1 cut(s) | 433 |
| BmsI | GCATC | 4 cut(s) | 78, 642, 708, 718 |
| BpiI | GAAGAC | 2 cut(s) | 451, 570 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 146, 178 |
| BsaJI | CCNNGG | 3 cut(s) | 220, 283, 435 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 288, 318 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 17, 226, 595, 643 |
| Bse3DI | GCAATG | 2 cut(s) | 444, 515 |
| BseDI | CCNNGG | 3 cut(s) | 220, 283, 435 |
| BseGI | GGATG | 4 cut(s) | 118, 633, 699, 709 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 17, 226, 595, 643 |
| BseMI | GCAATG | 2 cut(s) | 444, 515 |
| BshFI | GGCC | 1 cut(s) | 440 |
| BslFI | GGGAC | 2 cut(s) | 72, 659 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 17, 226, 595, 643 |
| BsmAI | GTCTC | 1 cut(s) | 23 |
| BsmFI | GGGAC | 2 cut(s) | 72, 659 |
| BsnI | GGCC | 1 cut(s) | 440 |
| Bsp143I | GATC | 2 cut(s) | 34, 397 |
| Bsp19I | CCATGG | 1 cut(s) | 435 |
| BspACI | CCGC | 1 cut(s) | 407 |
| BspANI | GGCC | 1 cut(s) | 440 |
| BspLI | GGNNCC | 1 cut(s) | 433 |
| BspPI | GGATC | 1 cut(s) | 405 |
| BsrDI | GCAATG | 2 cut(s) | 444, 515 |
| BssECI | CCNNGG | 3 cut(s) | 220, 283, 435 |
| BssMI | GATC | 2 cut(s) | 34, 397 |
| BssT1I | CCWWGG | 3 cut(s) | 220, 283, 435 |
| Bst4CI | ACNGT | 4 cut(s) | 127, 139, 722, 739 |
| Bst6I | CTCTTC | 2 cut(s) | 21, 44 |
| BstDEI | CTNAG | 2 cut(s) | 393, 610 |
| BstDSI | CCRYGG | 1 cut(s) | 435 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 15 |
| BstF5I | GGATG | 4 cut(s) | 118, 633, 699, 709 |
| BstKTI | GATC | 2 cut(s) | 37, 400 |
| BstMAI | GTCTC | 1 cut(s) | 23 |
| BstMBI | GATC | 2 cut(s) | 34, 397 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 446 |
| BstSFI | CTRYAG | 1 cut(s) | 420 |
| BstV2I | GAAGAC | 2 cut(s) | 451, 570 |
| BsuI | GTATCC | 1 cut(s) | 421 |
| BsuRI | GGCC | 1 cut(s) | 440 |
| BtgI | CCRYGG | 1 cut(s) | 435 |
| BtsCI | GGATG | 4 cut(s) | 118, 633, 699, 709 |
| CaiI | CAGNNNCTG | 1 cut(s) | 85 |
| CviAII | CATG | 5 cut(s) | 344, 415, 436, 559, 730 |
| CviJI | RGCY | 4 cut(s) | 157, 380, 440, 576 |
| CviKI_1 | RGCY | 4 cut(s) | 157, 380, 440, 576 |
| DdeI | CTNAG | 2 cut(s) | 393, 610 |
| DpnI | GATC | 2 cut(s) | 36, 399 |
| DpnII | GATC | 2 cut(s) | 34, 397 |
| DraI | TTTAAA | 2 cut(s) | 16, 553 |
| Eam1104I | CTCTTC | 2 cut(s) | 21, 44 |
| EarI | CTCTTC | 2 cut(s) | 21, 44 |
| Eco130I | CCWWGG | 3 cut(s) | 220, 283, 435 |
| Eco57I | CTGAAG | 2 cut(s) | 55, 77 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 15 |
| EcoT14I | CCWWGG | 3 cut(s) | 220, 283, 435 |
| ErhI | CCWWGG | 3 cut(s) | 220, 283, 435 |
| FaeI | CATG | 5 cut(s) | 347, 418, 439, 562, 733 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 173, 205 |
| FaqI | GGGAC | 2 cut(s) | 72, 659 |
| FatI | CATG | 5 cut(s) | 343, 414, 435, 558, 729 |
| FblI | GTMKAC | 1 cut(s) | 582 |
| FokI | GGATG | 4 cut(s) | 105, 620, 686, 696 |
| FspBI | CTAG | 5 cut(s) | 44, 114, 338, 465, 669 |
| HaeIII | GGCC | 1 cut(s) | 440 |
| Hin1II | CATG | 5 cut(s) | 347, 418, 439, 562, 733 |
| HinfI | GANTC | 4 cut(s) | 82, 101, 109, 566 |
| HphI | GGTGA | 1 cut(s) | 272 |
| Hpy166II | GTNNAC | 4 cut(s) | 8, 142, 293, 583 |
| Hpy188I | TCNGA | 2 cut(s) | 87, 150 |
| Hpy188III | TCNNGA | 1 cut(s) | 524 |
| Hpy8I | GTNNAC | 4 cut(s) | 8, 142, 293, 583 |
| HpyAV | CCTTC | 3 cut(s) | 638, 644, 735 |
| HpyCH4III | ACNGT | 4 cut(s) | 127, 139, 722, 739 |
| HpyCH4IV | ACGT | 1 cut(s) | 480 |
| HpyCH4V | TGCA | 4 cut(s) | 238, 449, 680, 699 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 446 |
| HpyF3I | CTNAG | 2 cut(s) | 393, 610 |
| HpySE526I | ACGT | 1 cut(s) | 480 |
| Hsp92II | CATG | 5 cut(s) | 347, 418, 439, 562, 733 |
| Kzo9I | GATC | 2 cut(s) | 34, 397 |
| LmnI | GCTCC | 1 cut(s) | 154 |
| LpnPI | CCDG | 4 cut(s) | 92, 465, 586, 603 |
| LweI | GCATC | 4 cut(s) | 78, 642, 708, 718 |
| MaeI | CTAG | 5 cut(s) | 44, 114, 338, 465, 669 |
| MaeII | ACGT | 1 cut(s) | 480 |
| MaeIII | GTNAC | 1 cut(s) | 476 |
| MalI | GATC | 2 cut(s) | 36, 399 |
| MboI | GATC | 2 cut(s) | 34, 397 |
| MboII | GAAGA | 5 cut(s) | 31, 38, 269, 451, 575 |
| MluCI | AATT | 5 cut(s) | 184, 267, 367, 547, 663 |
| MlyI | GAGTC | 1 cut(s) | 560 |
| MnlI | CCTC | 6 cut(s) | 144, 170, 172, 314, 420, 617 |
| MroXI | GAANNNNTTC | 1 cut(s) | 276 |
| MseI | TTAA | 3 cut(s) | 15, 552, 745 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 446 |
| NcoI | CCATGG | 1 cut(s) | 435 |
| NdeII | GATC | 2 cut(s) | 34, 397 |
| NlaIII | CATG | 5 cut(s) | 347, 418, 439, 562, 733 |
| NlaIV | GGNNCC | 1 cut(s) | 433 |
| PdmI | GAANNNNTTC | 1 cut(s) | 276 |
| PfeI | GAWTC | 3 cut(s) | 82, 101, 109 |
| PleI | GAGTC | 1 cut(s) | 560 |
| PpsI | GAGTC | 1 cut(s) | 560 |
| PspN4I | GGNNCC | 1 cut(s) | 433 |
| PstNI | CAGNNNCTG | 1 cut(s) | 85 |
| SaqAI | TTAA | 3 cut(s) | 15, 552, 745 |
| Sau3AI | GATC | 2 cut(s) | 34, 397 |
| SchI | GAGTC | 1 cut(s) | 560 |
| SetI | ASST | 8 cut(s) | 13, 22, 159, 256, 289, 483, 609, 630 |
| SfaNI | GCATC | 4 cut(s) | 78, 642, 708, 718 |
| SfcI | CTRYAG | 1 cut(s) | 420 |
| Sse9I | AATT | 5 cut(s) | 184, 267, 367, 547, 663 |
| SsiI | CCGC | 1 cut(s) | 407 |
| SspMI | CTAG | 5 cut(s) | 44, 114, 338, 465, 669 |
| StyI | CCWWGG | 3 cut(s) | 220, 283, 435 |
| TaaI | ACNGT | 4 cut(s) | 127, 139, 722, 739 |
| TaiI | ACGT | 1 cut(s) | 483 |
| TaqI | TCGA | 1 cut(s) | 51 |
| TasI | AATT | 5 cut(s) | 184, 267, 367, 547, 663 |
| TfiI | GAWTC | 3 cut(s) | 82, 101, 109 |
| Tru1I | TTAA | 3 cut(s) | 15, 552, 745 |
| Tru9I | TTAA | 3 cut(s) | 15, 552, 745 |
| TspDTI | ATGAA | 1 cut(s) | 746 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 15 |
| XapI | RAATTY | 2 cut(s) | 184, 547 |
| XmiI | GTMKAC | 1 cut(s) | 582 |
| XmnI | GAANNNNTTC | 1 cut(s) | 276 |
| XspI | CTAG | 5 cut(s) | 44, 114, 338, 465, 669 |