Cleavage site for pathogenic type III effector avirulence factor Avr
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G19473 AT5G19473 |
| fragaria_vesca | FvH4_3g27760 FvH4_3g27760 |
| malus_domestica | MD03G1164700.v1.1 |
| prunus_persica | Prupe.4G264200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0050361 |
| rosa_laevigata | RLG00000034699 |
| rosa_multiflora | Rmu_sc0005060.1_g000015 |
| rosa_roxburghii | Rroxscaffold_1G00030580 |
| rosa_rugosa | Rorug05G0260100 Rorug05G0260200 Rorug05G0260300 Rorug05G0260400 |
| rosa_samantha | Rh5AG332100 Rh5BG342400 Rh5CG369600 Rh5DG355200 |
| rosa_wichuraiana | Rw5G031390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 299, 342 |
| AfaI | GTAC | 1 cut(s) | 285 |
| AgsI | TTSAA | 3 cut(s) | 25, 212, 304 |
| AjnI | CCWGG | 1 cut(s) | 239 |
| AlwI | GGATC | 2 cut(s) | 299, 342 |
| AoxI | GGCC | 1 cut(s) | 219 |
| AspS9I | GGNCC | 1 cut(s) | 220 |
| AsuC2I | CCSGG | 1 cut(s) | 223 |
| BccI | CCATC | 1 cut(s) | 82 |
| BciT130I | CCWGG | 1 cut(s) | 241 |
| BciVI | GTATCC | 1 cut(s) | 92 |
| BcnI | CCSGG | 1 cut(s) | 223 |
| BfuI | GTATCC | 1 cut(s) | 92 |
| Bme1390I | CCNGG | 2 cut(s) | 223, 241 |
| BmgT120I | GGNCC | 1 cut(s) | 220 |
| BmiI | GGNNCC | 1 cut(s) | 342 |
| BmrFI | CCNGG | 2 cut(s) | 223, 241 |
| BmsI | GCATC | 2 cut(s) | 206, 303 |
| BpuMI | CCSGG | 1 cut(s) | 223 |
| BsaWI | WCCGGW | 1 cut(s) | 27 |
| BseBI | CCWGG | 1 cut(s) | 241 |
| BseGI | GGATG | 3 cut(s) | 84, 196, 235 |
| BshFI | GGCC | 1 cut(s) | 221 |
| BsiSI | CCGG | 2 cut(s) | 28, 223 |
| BsmI | GAATGC | 1 cut(s) | 65 |
| BsnI | GGCC | 1 cut(s) | 221 |
| Bsp143I | GATC | 2 cut(s) | 291, 334 |
| BspANI | GGCC | 1 cut(s) | 221 |
| BspLI | GGNNCC | 1 cut(s) | 342 |
| BspPI | GGATC | 2 cut(s) | 299, 342 |
| BssMI | GATC | 2 cut(s) | 291, 334 |
| Bst2UI | CCWGG | 1 cut(s) | 241 |
| Bst4CI | ACNGT | 2 cut(s) | 42, 173 |
| BstC8I | GCNNGC | 2 cut(s) | 59, 63 |
| BstF5I | GGATG | 3 cut(s) | 84, 196, 235 |
| BstKTI | GATC | 2 cut(s) | 294, 337 |
| BstMBI | GATC | 2 cut(s) | 291, 334 |
| BstNI | CCWGG | 1 cut(s) | 241 |
| BstSCI | CCNGG | 2 cut(s) | 221, 239 |
| BsuI | GTATCC | 1 cut(s) | 92 |
| BsuRI | GGCC | 1 cut(s) | 221 |
| BtsCI | GGATG | 3 cut(s) | 84, 196, 235 |
| Cac8I | GCNNGC | 2 cut(s) | 59, 63 |
| Cfr13I | GGNCC | 1 cut(s) | 220 |
| Csp6I | GTAC | 1 cut(s) | 284 |
| CviAII | CATG | 2 cut(s) | 8, 109 |
| CviJI | RGCY | 2 cut(s) | 37, 221 |
| CviKI_1 | RGCY | 2 cut(s) | 37, 221 |
| CviQI | GTAC | 1 cut(s) | 284 |
| DpnI | GATC | 2 cut(s) | 293, 336 |
| DpnII | GATC | 2 cut(s) | 291, 334 |
| EcoRII | CCWGG | 1 cut(s) | 239 |
| EcoT22I | ATGCAT | 1 cut(s) | 268 |
| FaeI | CATG | 2 cut(s) | 11, 112 |
| FaiI | YATR | 3 cut(s) | 9, 110, 264 |
| FatI | CATG | 2 cut(s) | 7, 108 |
| FokI | GGATG | 3 cut(s) | 91, 203, 242 |
| HaeIII | GGCC | 1 cut(s) | 221 |
| HapII | CCGG | 2 cut(s) | 28, 223 |
| Hin1II | CATG | 2 cut(s) | 11, 112 |
| HinfI | GANTC | 1 cut(s) | 115 |
| HpaII | CCGG | 2 cut(s) | 28, 223 |
| Hpy166II | GTNNAC | 2 cut(s) | 176, 284 |
| Hpy8I | GTNNAC | 2 cut(s) | 176, 284 |
| HpyAV | CCTTC | 1 cut(s) | 220 |
| HpyCH4III | ACNGT | 2 cut(s) | 42, 173 |
| HpyCH4IV | ACGT | 1 cut(s) | 178 |
| HpyCH4V | TGCA | 6 cut(s) | 65, 112, 130, 197, 266, 316 |
| HpySE526I | ACGT | 1 cut(s) | 178 |
| Hsp92II | CATG | 2 cut(s) | 11, 112 |
| Kzo9I | GATC | 2 cut(s) | 291, 334 |
| LmnI | GCTCC | 1 cut(s) | 12 |
| LpnPI | CCDG | 6 cut(s) | 41, 71, 226, 236, 253, 323 |
| LweI | GCATC | 2 cut(s) | 206, 303 |
| MaeII | ACGT | 1 cut(s) | 178 |
| MaeIII | GTNAC | 1 cut(s) | 318 |
| MalI | GATC | 2 cut(s) | 293, 336 |
| MboI | GATC | 2 cut(s) | 291, 334 |
| MnlI | CCTC | 1 cut(s) | 272 |
| Mph1103I | ATGCAT | 1 cut(s) | 268 |
| MseI | TTAA | 2 cut(s) | 270, 324 |
| MslI | CAYNNNNRTG | 1 cut(s) | 107 |
| MspI | CCGG | 2 cut(s) | 28, 223 |
| MspR9I | CCNGG | 2 cut(s) | 223, 241 |
| Mva1269I | GAATGC | 1 cut(s) | 65 |
| MvaI | CCWGG | 1 cut(s) | 241 |
| NciI | CCSGG | 1 cut(s) | 223 |
| NdeII | GATC | 2 cut(s) | 291, 334 |
| NlaIII | CATG | 2 cut(s) | 11, 112 |
| NlaIV | GGNNCC | 1 cut(s) | 342 |
| NsiI | ATGCAT | 1 cut(s) | 268 |
| PctI | GAATGC | 1 cut(s) | 65 |
| PfeI | GAWTC | 1 cut(s) | 115 |
| PfoI | TCCNGGA | 1 cut(s) | 239 |
| Psp6I | CCWGG | 1 cut(s) | 239 |
| PspGI | CCWGG | 1 cut(s) | 239 |
| PspN4I | GGNNCC | 1 cut(s) | 342 |
| PspPI | GGNCC | 1 cut(s) | 220 |
| RsaI | GTAC | 1 cut(s) | 285 |
| RsaNI | GTAC | 1 cut(s) | 284 |
| RseI | CAYNNNNRTG | 1 cut(s) | 107 |
| SaqAI | TTAA | 2 cut(s) | 270, 324 |
| Sau3AI | GATC | 2 cut(s) | 291, 334 |
| Sau96I | GGNCC | 1 cut(s) | 220 |
| ScrFI | CCNGG | 2 cut(s) | 223, 241 |
| SetI | ASST | 3 cut(s) | 181, 283, 342 |
| SfaNI | GCATC | 2 cut(s) | 206, 303 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 107 |
| StyD4I | CCNGG | 2 cut(s) | 221, 239 |
| TaaI | ACNGT | 2 cut(s) | 42, 173 |
| TaiI | ACGT | 1 cut(s) | 181 |
| TatI | WGTACW | 1 cut(s) | 283 |
| TfiI | GAWTC | 1 cut(s) | 115 |
| Tru1I | TTAA | 2 cut(s) | 270, 324 |
| Tru9I | TTAA | 2 cut(s) | 270, 324 |
| Zsp2I | ATGCAT | 1 cut(s) | 268 |