Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006813

Physical Location & Seq

Genomic Coordinates Forward (+)

19732371 .. 19740637

Gene Structure 8267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G265300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTCGGCCTCTTTAGCTGCTTTTGAGCGCCCAAGACCTGGAGGTTCTAATTCGGTCTTCAAGAGTGGCCCACTTTTCATATCTTCGAAAGGCATAGGCTGGAAGTCTTGGAAGAAGCGGTGGTTTATCCTCACACGGACTTCTTTGGTTTTGTTTAAAAATGATCCTAGTGCGCTTCCACAAAGAGGTGGTGAAGTAAATCTGACTTTGGGGGGCATTGACTTGAACAATTCTGGGAGTGTTGTTGTTAGAGAAGATAAAAAGCTGCTGACAGTTTTATTTCCTGATGGATGTGATGGTCGGGCCTTCACCCTTAAGGCTGAGACATCAGAAGACTTGTATGAGTGGAAGACAGCCCTTGAACATGCTCTTGCACAAGCGCCAAGTGCTGCCCTTGTCATGGGACACAATGGGATTTTCCGAAATGACACAAATGATACAATGGAAGGGTCCTTCCATCAATGGAGGGATAAGAGGCCTGTTAAATCTTTGGTTGTTGGAAGACCAATTCTGCTTGCGCTAGAAGATATTGATGGAGGTCCTTCGTTCCTTGAGAAAGCTCTTCGGTTCCTCAAAAAGTTTGGTACTAAAGTTGAAGGAATTTTGCGACAGTCAGCGGATGTTGAGGAGGTAGAACGTAGGGTACAAGAATATGAACAAGGCAAGACTGAATTTGATCCCGGTGAGGACGCTCATGTTATTGGTGATTGTGTCAAGCATGTTCTGAGAGAGTTGCCCTCGTCTCCAGTACCAGCATCTTGCTGCACTGCGTTGCCAGAAGCTTATAAAATTGATCGAAAGGAAGCTCGGATTAATGCAATGCGCTCTTCAATATTGGAGACATTTCTTGAGCCAAACCGCCGTTTATTACAGAGAATTTTGAAGATGATGCATACCATCTCATCTCACTCACATGAGAATCGGATGACTCCATCTGCAGTTGCTGCTTGCATGGCACCCTTGCTCTTACGCCCTCTATTAGCTGGTGAATGTGAGTTGGATGATGAGTTTGATGTGAATGGAGATAATTCTGCCCAGCTTCTTGCTGCAGAGGTGGTAGATTACCCAAAGCATCCATCAACAGCATCTTCTGCCTTAGTAGAATTAACAACTCGTCTTGATTTCTTCAAGGAAAGACGCTCTCAGTTGATGGAACAACTTCATAATCTTGATTTAAATTATGGCACAACATCTTTGCAAGACTCTGTGTATAGACCATCATCACCACCATGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0003674 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006996 GO:0007049 GO:0008047 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009832 GO:0009920 GO:0009987 GO:0016020 GO:0016043 GO:0022402 GO:0022607 GO:0030234 GO:0030695 GO:0031976 GO:0031984 GO:0032506 GO:0034357 GO:0042546 GO:0042651 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050790 GO:0051301 GO:0051336 GO:0051345 GO:0055035 GO:0060589 GO:0061640 GO:0065007 GO:0065009 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0098772 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lzipper-MIP1 PH RhoGAP

Protein Analysis

413

Amino Acids

45.89

Weight (kDa)

6.24

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19390 AT5G19390 AT5G19390 AT5G19390
fragaria_vesca	FvH4_3g27830 FvH4_3g27830 FvH4_3g27830 FvH4_3g27830
malus_domestica	MD03G1165400.v1.1 MD11G1184700.v1.1
prunus_persica	Prupe.4G265200_v2.0.a1 Prupe.4G265200_v2.0.a1 Prupe.4G265200_v2.0.a1 Prupe.4G265300_v2.0.a1
pyrus_communis	pycom03g11990 pycom12g08810
rosa_chinensis	RchiOBHm_Chr5g0050541
rosa_laevigata	RLG00000034705
rosa_multiflora	Rmu_sc0004301.1_g000009
rosa_roxburghii	Rroxscaffold_1G00030350
rosa_rugosa	Rorug05G0261400
rosa_samantha	Rh5AG333300 Rh5BG343200 Rh5CG370800 Rh5DG355900
rosa_wichuraiana	Rw5G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	786
AccB1I	GGYRCC	1 cut(s)	955
AccB7I	CCANNNNNTGG	1 cut(s)	38
AciI	CCGC	3 cut(s)	118, 617, 859
AclWI	GGATC	2 cut(s)	158, 671
AcsI	RAATTY	3 cut(s)	600, 671, 876
AfaI	GTAC	3 cut(s)	586, 645, 750
AfiI	CCNNNNNNNGG	3 cut(s)	38, 185, 400
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	7 cut(s)	61, 226, 362, 596, 831, 883, 1129
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	7 cut(s)	17, 265, 560, 782, 806, 983, 1039
AluI	AGCT	7 cut(s)	17, 265, 560, 782, 806, 983, 1039
Alw26I	GTCTC	3 cut(s)	317, 747, 833
AlwI	GGATC	2 cut(s)	158, 671
AlwNI	CAGNNNCTG	1 cut(s)	944
AoxI	GGCC	4 cut(s)	6, 67, 303, 476
ApeKI	GCWGC	6 cut(s)	17, 265, 389, 762, 944, 1046
ApoI	RAATTY	3 cut(s)	600, 671, 876
AseI	ATTAAT	1 cut(s)	813
Asp700I	GAANNNNTTC	1 cut(s)	1158
AspLEI	GCGC	5 cut(s)	30, 175, 382, 520, 825
AspS9I	GGNCC	4 cut(s)	68, 303, 450, 539
AsuC2I	CCSGG	1 cut(s)	681
AsuHPI	GGTGA	6 cut(s)	203, 301, 695, 716, 998, 1215
AsuII	TTCGAA	1 cut(s)	86
AvaII	GGWCC	2 cut(s)	450, 539
BaeI	ACNNNNGTAYC	2 cut(s)	576, 609
BanI	GGYRCC	1 cut(s)	955
BbsI	GAAGAC	4 cut(s)	49, 339, 356, 508
BbvI	GCAGC	6 cut(s)	4, 252, 376, 749, 931, 1033
BccI	CCATC	9 cut(s)	281, 290, 465, 527, 905, 940, 1084, 1144, 1225
BceAI	ACGGC	1 cut(s)	846
BciT130I	CCWGG	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	681
BcoDI	GTCTC	3 cut(s)	317, 747, 833
BfaI	CTAG	2 cut(s)	168, 521
BfmI	CTRYAG	2 cut(s)	936, 1047
BfoI	RGCGCY	2 cut(s)	31, 383
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	6 cut(s)	18, 266, 390, 763, 945, 1047
BlsI	GCNGC	6 cut(s)	19, 267, 391, 764, 946, 1048
Bme1390I	CCNGG	2 cut(s)	39, 681
Bme18I	GGWCC	2 cut(s)	450, 539
BmgT120I	GGNCC	4 cut(s)	68, 303, 450, 539
BmiI	GGNNCC	3 cut(s)	451, 569, 957
BmrFI	CCNGG	2 cut(s)	39, 681
BmsI	GCATC	4 cut(s)	764, 879, 1081, 1094
BpiI	GAAGAC	4 cut(s)	49, 339, 356, 508
BplI	GAGNNNNNCTC	2 cut(s)	722, 754
BpmI	CTGGAG	2 cut(s)	60, 729
Bpu14I	TTCGAA	1 cut(s)	86
BpuEI	CTTGAG	2 cut(s)	572, 869
BpuMI	CCSGG	1 cut(s)	681
BsaJI	CCNNGG	1 cut(s)	1229
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 185, 400
Bse1I	ACTGG	1 cut(s)	746
Bse3DI	GCAATG	1 cut(s)	825
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	1229
BseGI	GGATG	5 cut(s)	296, 625, 930, 1006, 1072
BseLI	CCNNNNNNNGG	3 cut(s)	38, 185, 400
BseMI	GCAATG	1 cut(s)	825
BseMII	CTCAG	3 cut(s)	312, 716, 1157
BseNI	ACTGG	1 cut(s)	746
BseRI	GAGGAG	1 cut(s)	641
BseXI	GCAGC	6 cut(s)	4, 252, 376, 749, 931, 1033
BseYI	CCCAGC	1 cut(s)	1035
BsgI	GTGCAG	1 cut(s)	748
BshFI	GGCC	4 cut(s)	8, 69, 305, 478
BshNI	GGYRCC	1 cut(s)	955
BsiSI	CCGG	1 cut(s)	681
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	3 cut(s)	38, 185, 400
BsmAI	GTCTC	3 cut(s)	317, 747, 833
BsmBI	CGTCTC	1 cut(s)	747
BsmFI	GGGAC	1 cut(s)	417
BsnI	GGCC	4 cut(s)	8, 69, 305, 478
Bsp119I	TTCGAA	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	163, 676, 793
Bsp19I	CCATGG	1 cut(s)	1229
BspACI	CCGC	3 cut(s)	118, 617, 859
BspANI	GGCC	4 cut(s)	8, 69, 305, 478
BspCNI	CTCAG	3 cut(s)	313, 717, 1156
BspLI	GGNNCC	3 cut(s)	451, 569, 957
BspMAI	CTGCAG	2 cut(s)	940, 1051
BspPI	GGATC	2 cut(s)	158, 671
BspQI	GCTCTTC	2 cut(s)	567, 832
BspT104I	TTCGAA	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	955
BspTI	CTTAAG	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	825
BsrI	ACTGG	1 cut(s)	746
BssECI	CCNNGG	1 cut(s)	1229
BssMI	GATC	3 cut(s)	163, 676, 793
BssT1I	CCWWGG	1 cut(s)	1229
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	274, 612
Bst6I	CTCTTC	2 cut(s)	567, 832
BstAFI	CTTAAG	1 cut(s)	314
BstAPI	GCANNNNNTGC	2 cut(s)	944, 1091
BstBI	TTCGAA	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	516, 949
BstDEI	CTNAG	4 cut(s)	321, 725, 1096, 1143
BstDSI	CCRYGG	1 cut(s)	1229
BstF5I	GGATG	5 cut(s)	296, 625, 930, 1006, 1072
BstH2I	RGCGCY	2 cut(s)	31, 383
BstHHI	GCGC	5 cut(s)	30, 175, 382, 520, 825
BstKTI	GATC	3 cut(s)	166, 679, 796
BstMAI	GTCTC	3 cut(s)	317, 747, 833
BstMBI	GATC	3 cut(s)	163, 676, 793
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 386, 944, 953, 1091
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	2 cut(s)	368, 722
BstSCI	CCNGG	2 cut(s)	37, 679
BstSFI	CTRYAG	2 cut(s)	936, 1047
BstV1I	GCAGC	6 cut(s)	4, 252, 376, 749, 931, 1033
BstV2I	GAAGAC	4 cut(s)	49, 339, 356, 508
BsuRI	GGCC	4 cut(s)	8, 69, 305, 478
BtgI	CCRYGG	1 cut(s)	1229
BtsCI	GGATG	5 cut(s)	296, 625, 930, 1006, 1072
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	1 cut(s)	765
Cac8I	GCNNGC	2 cut(s)	516, 949
CaiI	CAGNNNCTG	1 cut(s)	944
CfoI	GCGC	5 cut(s)	30, 175, 382, 520, 825
Cfr13I	GGNCC	4 cut(s)	68, 303, 450, 539
CseI	GACGC	2 cut(s)	698, 1146
Csp6I	GTAC	3 cut(s)	585, 644, 749
CviAII	CATG	7 cut(s)	365, 400, 695, 719, 914, 952, 1230
CviQI	GTAC	3 cut(s)	585, 644, 749
DdeI	CTNAG	4 cut(s)	321, 725, 1096, 1143
DpnI	GATC	3 cut(s)	165, 678, 795
DpnII	GATC	3 cut(s)	163, 676, 793
DraI	TTTAAA	2 cut(s)	157, 1176
Eam1104I	CTCTTC	2 cut(s)	567, 832
EarI	CTCTTC	2 cut(s)	567, 832
Eco130I	CCWWGG	1 cut(s)	1229
Eco147I	AGGCCT	1 cut(s)	478
Eco47I	GGWCC	2 cut(s)	450, 539
EcoO109I	RGGNCCY	2 cut(s)	450, 539
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	1229
EcoT22I	ATGCAT	1 cut(s)	894
ErhI	CCWWGG	1 cut(s)	1229
Esp3I	CGTCTC	1 cut(s)	747
FaeI	CATG	7 cut(s)	368, 403, 698, 722, 917, 955, 1233
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	7 cut(s)	364, 399, 694, 718, 913, 951, 1229
Fnu4HI	GCNGC	6 cut(s)	18, 266, 390, 763, 945, 1047
FokI	GGATG	5 cut(s)	303, 632, 937, 1013, 1059
Fsp4HI	GCNGC	6 cut(s)	18, 266, 390, 763, 945, 1047
FspBI	CTAG	2 cut(s)	168, 521
GlaI	GCGC	5 cut(s)	29, 174, 381, 519, 824
GluI	GCNGC	6 cut(s)	18, 266, 390, 763, 945, 1047
GsaI	CCCAGC	1 cut(s)	1039
GsuI	CTGGAG	2 cut(s)	60, 729
HaeII	RGCGCY	2 cut(s)	31, 383
HaeIII	GGCC	4 cut(s)	8, 69, 305, 478
HapII	CCGG	1 cut(s)	681
HgaI	GACGC	2 cut(s)	698, 1146
HhaI	GCGC	5 cut(s)	30, 175, 382, 520, 825
Hin1II	CATG	7 cut(s)	368, 403, 698, 722, 917, 955, 1233
Hin6I	GCGC	5 cut(s)	28, 173, 380, 518, 823
HinP1I	GCGC	5 cut(s)	28, 173, 380, 518, 823
HindIII	AAGCTT	1 cut(s)	780
HinfI	GANTC	3 cut(s)	919, 928, 1202
HpaII	CCGG	1 cut(s)	681
HphI	GGTGA	6 cut(s)	203, 301, 695, 716, 998, 1215
Hpy188I	TCNGA	6 cut(s)	204, 331, 422, 726, 810, 924
Hpy188III	TCNNGA	5 cut(s)	61, 284, 848, 1118, 1169
HpyAV	CCTTC	5 cut(s)	316, 440, 463, 552, 590
HpyCH4III	ACNGT	2 cut(s)	274, 612
HpyCH4IV	ACGT	1 cut(s)	637
HpyCH4V	TGCA	8 cut(s)	374, 765, 818, 892, 938, 951, 1049, 1198
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 386, 944, 953, 1091
HpyF3I	CTNAG	4 cut(s)	321, 725, 1096, 1143
HpySE526I	ACGT	1 cut(s)	637
Hsp92II	CATG	7 cut(s)	368, 403, 698, 722, 917, 955, 1233
HspAI	GCGC	5 cut(s)	28, 173, 380, 518, 823
Kzo9I	GATC	3 cut(s)	163, 676, 793
LguI	GCTCTTC	2 cut(s)	567, 832
Lsp1109I	GCAGC	6 cut(s)	4, 252, 376, 749, 931, 1033
LweI	GCATC	4 cut(s)	764, 879, 1081, 1094
MaeI	CTAG	2 cut(s)	168, 521
MaeII	ACGT	1 cut(s)	637
MalI	GATC	3 cut(s)	165, 678, 795
MboI	GATC	3 cut(s)	163, 676, 793
MlyI	GAGTC	2 cut(s)	922, 1196
MmeI	TCCRAC	2 cut(s)	478, 978
Mph1103I	ATGCAT	1 cut(s)	894
MroXI	GAANNNNTTC	1 cut(s)	1158
MseI	TTAA	6 cut(s)	156, 315, 483, 813, 1106, 1175
MslI	CAYNNNNRTG	2 cut(s)	912, 1228
MspA1I	CMGCKG	1 cut(s)	617
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	1 cut(s)	681
MspR9I	CCNGG	2 cut(s)	39, 681
MvaI	CCWGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	5 cut(s)	14, 386, 944, 953, 1091
NciI	CCSGG	1 cut(s)	681
NcoI	CCATGG	1 cut(s)	1229
NdeII	GATC	3 cut(s)	163, 676, 793
NlaIII	CATG	7 cut(s)	368, 403, 698, 722, 917, 955, 1233
NlaIV	GGNNCC	3 cut(s)	451, 569, 957
NsiI	ATGCAT	1 cut(s)	894
NspI	RCATGY	2 cut(s)	368, 722
NspV	TTCGAA	1 cut(s)	86
PceI	AGGCCT	1 cut(s)	478
PciSI	GCTCTTC	2 cut(s)	567, 832
PdmI	GAANNNNTTC	1 cut(s)	1158
PfeI	GAWTC	1 cut(s)	919
PflMI	CCANNNNNTGG	1 cut(s)	38
PkrI	GCNGC	6 cut(s)	19, 267, 391, 764, 946, 1048
PleI	GAGTC	2 cut(s)	922, 1196
PpsI	GAGTC	2 cut(s)	922, 1196
PpuMI	RGGWCCY	2 cut(s)	450, 539
PshBI	ATTAAT	1 cut(s)	813
PsiI	TTATAA	1 cut(s)	786
Psp5II	RGGWCCY	2 cut(s)	450, 539
Psp6I	CCWGG	1 cut(s)	37
PspFI	CCCAGC	1 cut(s)	1035
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	3 cut(s)	451, 569, 957
PspPI	GGNCC	4 cut(s)	68, 303, 450, 539
PspPPI	RGGWCCY	2 cut(s)	450, 539
PsrI	GAACNNNNNNTAC	2 cut(s)	627, 659
PstI	CTGCAG	2 cut(s)	940, 1051
PstNI	CAGNNNCTG	1 cut(s)	944
RsaI	GTAC	3 cut(s)	586, 645, 750
RsaNI	GTAC	3 cut(s)	585, 644, 749
RseI	CAYNNNNRTG	2 cut(s)	912, 1228
SapI	GCTCTTC	2 cut(s)	567, 832
SaqAI	TTAA	6 cut(s)	156, 315, 483, 813, 1106, 1175
SatI	GCNGC	6 cut(s)	18, 266, 390, 763, 945, 1047
Sau3AI	GATC	3 cut(s)	163, 676, 793
Sau96I	GGNCC	4 cut(s)	68, 303, 450, 539
SchI	GAGTC	2 cut(s)	922, 1196
ScrFI	CCNGG	2 cut(s)	39, 681
SfaNI	GCATC	4 cut(s)	764, 879, 1081, 1094
SfcI	CTRYAG	2 cut(s)	936, 1047
SfuI	TTCGAA	1 cut(s)	86
SinI	GGWCC	2 cut(s)	450, 539
SmiI	ATTTAAAT	1 cut(s)	1176
SmiMI	CAYNNNNRTG	2 cut(s)	912, 1228
SmlI	CTYRAG	3 cut(s)	314, 551, 848
SmoI	CTYRAG	3 cut(s)	314, 551, 848
SseBI	AGGCCT	1 cut(s)	478
SsiI	CCGC	3 cut(s)	118, 617, 859
SspI	AATATT	1 cut(s)	834
SspMI	CTAG	2 cut(s)	168, 521
StuI	AGGCCT	1 cut(s)	478
StyD4I	CCNGG	2 cut(s)	37, 679
StyI	CCWWGG	1 cut(s)	1229
SwaI	ATTTAAAT	1 cut(s)	1176
TaaI	ACNGT	2 cut(s)	274, 612
TaiI	ACGT	1 cut(s)	640
TaqI	TCGA	2 cut(s)	86, 796
TaqII	GACCGA	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	919
Tru1I	TTAA	6 cut(s)	156, 315, 483, 813, 1106, 1175
Tru9I	TTAA	6 cut(s)	156, 315, 483, 813, 1106, 1175
TscAI	CASTG	1 cut(s)	772
TseI	GCWGC	6 cut(s)	17, 265, 389, 762, 944, 1046
TspDTI	ATGAA	3 cut(s)	67, 669, 1151
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	1 cut(s)	772
Van91I	CCANNNNNTGG	1 cut(s)	38
Vha464I	CTTAAG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	450, 539
VspI	ATTAAT	1 cut(s)	813
XapI	RAATTY	3 cut(s)	600, 671, 876
XceI	RCATGY	2 cut(s)	368, 722
XmnI	GAANNNNTTC	1 cut(s)	1158
XspI	CTAG	2 cut(s)	168, 521
Zsp2I	ATGCAT	1 cut(s)	894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.