Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006813

Physical Location & Seq

Genomic Coordinates Forward (+)

29574645 .. 29583610

Gene Structure 8966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0261400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3648 bp

ATGGAGACCCTTCTGGGTCGAGCGCTGGAGTATACTCTCAAGTACTGGCTCAAATCCTTCTCCAGAGACCAGTTCAAGTGGCAGGGACGGACGGTTCAGCTTTCCAATTTAGATATGGACGGCGATGCTTTGCACTCCAGCATGGGATTGCCGCCGGCGCTGCACGTGACCACGGCCAGAGTCGGCAAACTTGTGATAGTGCTCCCATCATCTTTGAGCAATGTTCAAGTGGAACCGATAGTAGTGCAGATTGATAAGCTGGATTTGGTTTTAGAGGAGAATTCGGAGTTGGATGCGAGAAACAGTCCGAGCAGTTCGCCATCATCCACTAGCTCCGGGAAAGGAAGTGGTTATGGATTTGCTGATAAGATTGCAGATGGAATGACTATAGAGATTCACACAGTTAATCTTCTACTTGAAACTCGTGGGGGTGGTCGCCAAGGAGGGGCAGCTTGGGCATCTCCTCTGGCTTCTATCACTATACGCAACCTTTTGCTGTATTCTACTAATGAAAATTGGCAGGTAGTAAATCTTAAAGAAGCACGGGAGTTCTCCACCAACAAAAAGTTCATTTATGTTTTCAAAAAAATTGAGTGGGAATCTTTGTCCATCGATCTCCTGCCTCACCCTGATATGTTCACGGATGCTAATATAGCGAGCACTCAAAATGGAGGAACCCAGAGAGATGATGATGGTGCAAAGCGAGCTTTCTTTGGTGGGGAGCGCTTTATAGAAGGAATTTCAGGAGAAGCTTATATCACAGTGCAAAGGACTGAATTAAATAGTCCACTCGGGCTTGAGGTTCAGTTACATATCACAGAGGCCATTTGTCCTGCAATAAGTGAACCAGGACTACGTGCTCTTCTCCGCTTTATGACTGGATTATATGTCTGTCTGAATAGAGGAGATGTTGATTCAAACACTCAGCAGCGGTCAACTGAAGCAGCAGGCCGTTCTATCGTTTCAATTGTTGTAGACCACATATTTCTCTGCATTAAAGATACTGAATTCAAGCTTGAACTTTTGATGCAGTCACTCTTCTTTTCACGGACAAGTGTTTCTGATGGAGAAATTGACAATAACTTGTCTAAGGTTATGATTGGTGGGCTCTTTTTAAGGGATACCTATTCGAGACCTCCTTGCACCTTAGTGCAACCATCAATGGATGCCATTTCCGAAGAACCTGTGCATGTTCCTGACTTTGGTAAGGACTTTTGCCCTCCCATATATCCTTTGGGAGCTCAGCAGTGGCAGTTGATCGTGGGTGTCCCTCTTTTATGCCTTCATTCTCTTCAGACCAAGCCCTCCCCTGTGCCTCCAGCTTTTGCTACACAAACAGTCATTGATTGCCAACCCCTGATGATTCATCTTCAGGAAGGATCCTGTTTGAGGATCTCTTCCTTCCTGGCCGATGGAATTGTTGTCAATCCCGGTGCTGTTTTACCAGATTTCTCGGTAAATTCCTTGATTTTCACCCTCAAGGAATTAGATGTTACTGTTCCCTTGGACGTGGACAATTTGCGTAGTCATGGTAACAACAGGAGCAGTATCAACCAGAGTTCCTTTTCTGGAGCAAGGCTTCACATTGAGAACTTGTTCTTCTCAGAGTCACCTTCACTAAAACTAAGGCTACTGAATTTGGACAAGGATCCTGCTTGCTTCTGTCTCTGGGAAGGTCAACCAGTTGATGCTAGCCAGAAGAAATGGACTACTAGAGCATCACACCTTACTTTGTCTCTCGAAACGTGTACTGCATCAGCTGGACTTCAGAGTTCTCTTGACGGGACCTCAGGCTTGTGGAGATGTGTTGAGCTGAAAGATGCTTGCATAGAAGTAGCTATGGTAACTGCTGATGGGAGCCCATTAACAAATGTTCCTCCTCCTGGTGGTATTGTCAGGATAGGGCTAGCTTGTGAAAAGTATCTCTCAAATACTTCTGTTGAACAGTTGTATTTTGTTTTGGATCTTTATGCGTACTTTGGCAGAGTTAGTGAAAAGATAGTTCTTGTTGGAAAATATCCTAGACCAAAGATGAGTACGGATGATACGTTCAAGGGGAAGCTAATTGACAAGGTTCCCAATGATACAGCAGTTAGTTTAGTGGTGAATAATCTTCAGCTACGATTTCTGGAATCTTCTTCCATGCATATTGAAGGAACGCCTCTAGTTCAGTTTGTTGGGCATGATCTCTTTATAAGAGTTACTCACAGAACTCTTGGTGGTGCAGTTGCTGTTTCCTCCACTATACGTTGGGATGGTGTTGAGGTGGACTGCGTAGACAGTGAGGGAAACTTGGCATGTGAGAATGGCAGCGATTTAATTTCTATTGAAAATGGTCATGGTTTTTTGGCAAGTGGAAATGGGTATCCTCAACTAAGACATGTCTTTTGGATACATAACCAAATAAACCATTCATCAAATGGTAAAGCTATTGTAGATCGATTTCTTGACATAAGCGTGGAACATGTAATTCCTTTAAATGAACAAGATGTAGAGTGTCATAGTTTGAATGTGTCAGCTTGTATTTCTGGCATTCGCCTAGGTGGCGGAATGAACTATGCTGAATCCTTGCTGCATCGCTTTGGAATACTTGACGCTGATGGTGGTCCTGGGAAGGGGCTATCTAAAGAGTTGGAGAATTTACGAGCAGGCCCTCTTTCAAAACTTTTCGAACCAGCATCTCTCATTGTTGATTCAAAAGAGGATGGAAGTTCAGGAGATGGGAAAAAGAGTGAGGTTTTGCACTGGGGAAAGCCAGATGATGTGAGCGTGTCCATAGAATTGAAAAATTGGTTATTTGCTCTTGAAGGTGCACAGGAAATGGCAGTGTTTAGAAGTTCCTACAATCAGGAGGGTGTGAGCAGAGAAGAGAGGTCTTGGCACACAACATTCCACAATCTGCACCTAAAAGGAAAAAGCAGTCCAAAACAAATGATGAATGGCATTAGAAAGTCATACAGGACACCAAAATATCCTTTAGAATTGGTGACGGTTGGTGTGGAAGGCTTGCAGATATTGAAGCCACATGCCCACAACTATCATAATCCTGCTGTCTTACATGTCAATGGGACCAAGGAATCTGCAGGTGTAAATCTTGAACTTCGCCTGGTGACAATGGAGGACAGTGTTGATCATGAAATGGGGGAATGGGTTGTAGAAAATGTGAAATTCTCTGTTGAGCAACCGATTGAGGCGGTTGTATCTAAGGATGAGCTGCAACATCTTGTTTTATTGTGCAAGTCGGAAGTTGACTCAATGGGTCGAATAACAGCTGGAATTCTGCGGCTATTTAAGTTGGAGGAGACCATAGGCCAGGCTGCTATGGATCAACTGACCAACCTTGGAAGTGAGGGCATTGACAAGATCTTCACTCCTGAGAAGCTCAGCAGGGGTAGCAGCTTCTACAGTGCTGGGCTCTCTCAATCAAATTTGATAAATGAAGGCCCAGTTACAAGTACAAGCACCTCAGAAATGACCGTGGCTTCACTTGAGGAGGTAGTTACTGATTCACAGGTCAAGTGTGCTGCTCTTCTTACCGAACTGGGCACTTCAGAATCTTCCGTGCAACATCTTGCAACTGTAAAGCAACTCACTCAAAAACTTCAGAGTATGCAGAGTTTATTGACAAAACTAAAGTCTCAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0003674 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006996 GO:0007049 GO:0008047 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009832 GO:0009920 GO:0009987 GO:0016020 GO:0016043 GO:0022402 GO:0022607 GO:0030234 GO:0030695 GO:0031976 GO:0031984 GO:0032506 GO:0034357 GO:0042546 GO:0042651 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050790 GO:0051301 GO:0051336 GO:0051345 GO:0055035 GO:0060589 GO:0061640 GO:0065007 GO:0065009 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0098772 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lzipper-MIP1 PH RhoGAP

Protein Analysis

1215

Amino Acids

133.09

Weight (kDa)

5.4

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BLTP3A_B	PF24917	33 - 205	2.1e-12	Bridge-like lipid transfer protein family member 3A/B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19390 AT5G19390 AT5G19390 AT5G19390
fragaria_vesca	FvH4_3g27830 FvH4_3g27830 FvH4_3g27830 FvH4_3g27830
malus_domestica	MD03G1165400.v1.1 MD11G1184700.v1.1
prunus_persica	Prupe.4G265200_v2.0.a1 Prupe.4G265200_v2.0.a1 Prupe.4G265200_v2.0.a1 Prupe.4G265300_v2.0.a1
pyrus_communis	pycom03g11990 pycom12g08810
rosa_chinensis	RchiOBHm_Chr5g0050541
rosa_laevigata	RLG00000034705
rosa_multiflora	Rmu_sc0004301.1_g000009
rosa_roxburghii	Rroxscaffold_1G00030350
rosa_rugosa	Rorug05G0261400
rosa_samantha	Rh5AG333300 Rh5BG343200 Rh5CG370800 Rh5DG355900
rosa_wichuraiana	Rw5G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2195
AarI	CACCTGC	1 cut(s)	3074
Acc36I	ACCTGC	2 cut(s)	511, 3074
AccI	GTMKAC	3 cut(s)	32, 975, 2277
AciI	CCGC	6 cut(s)	152, 868, 931, 2547, 3194, 3283
AclWI	GGATC	7 cut(s)	1374, 1387, 1400, 1643, 1656, 1971, 3333
AcoI	YGGCCR	2 cut(s)	174, 1407
AcsI	RAATTY	9 cut(s)	280, 738, 1007, 1459, 1636, 2638, 3167, 3276, 3427
AcuI	CTGAAG	7 cut(s)	960, 1277, 1355, 1751, 2099, 3534, 3587
AcvI	CACGTG	1 cut(s)	166
AfaI	GTAC	5 cut(s)	44, 1750, 1976, 2038, 3457
AfeI	AGCGCT	2 cut(s)	24, 725
AfiI	CCNNNNNNNGG	6 cut(s)	445, 1202, 1389, 1883, 1886, 2615
AflIII	ACRYGT	4 cut(s)	1745, 2380, 2464, 3058
AjiI	CACGTC	1 cut(s)	1510
AjnI	CCWGG	6 cut(s)	847, 1404, 1882, 2608, 3105, 3312
AjuI	GAANNNNNNNTTGG	4 cut(s)	272, 304, 551, 583
AleI	CACNNNNGTG	1 cut(s)	1148
AloI	GAACNNNNNNTCC	4 cut(s)	78, 110, 2033, 2065
Alw21I	GWGCWC	5 cut(s)	204, 662, 862, 1243, 2815
Alw26I	GTCTC	6 cut(s)	60, 1126, 1670, 1740, 3296, 3642
Alw44I	GTGCAC	1 cut(s)	2811
AlwI	GGATC	7 cut(s)	1374, 1387, 1400, 1643, 1656, 1971, 3333
AlwNI	CAGNNNCTG	1 cut(s)	2231
Ama87I	CYCGRG	1 cut(s)	791
Aor51HI	AGCGCT	2 cut(s)	24, 725
AoxI	GGCC	7 cut(s)	174, 822, 949, 1407, 2650, 3310, 3442
ApaLI	GTGCAC	1 cut(s)	2811
ApoI	RAATTY	9 cut(s)	280, 738, 1007, 1459, 1636, 2638, 3167, 3276, 3427
ArsI	GACNNNNNNTTYG	3 cut(s)	2370, 2402, 3620
Asp700I	GAANNNNTTC	1 cut(s)	1595
AspA2I	CCTAGG	1 cut(s)	2539
AspLEI	GCGC	3 cut(s)	25, 160, 726
AspS9I	GGNCC	5 cut(s)	1785, 2606, 2651, 3069, 3443
AsuC2I	CCSGG	2 cut(s)	337, 1431
AsuHPI	GGTGA	6 cut(s)	617, 1465, 1602, 2116, 2998, 3121
AsuII	TTCGAA	1 cut(s)	2670
AsuNHI	GCTAGC	2 cut(s)	1691, 1906
AvaI	CYCGRG	1 cut(s)	791
AvaII	GGWCC	3 cut(s)	1785, 2606, 3069
AvrII	CCTAGG	1 cut(s)	2539
AxyI	CCTNAGG	1 cut(s)	1789
BaeGI	GKGCMC	2 cut(s)	2815, 3548
BaeI	ACNNNNGTAYC	2 cut(s)	2076, 2109
BamHI	GGATCC	2 cut(s)	1379, 1648
BanII	GRGCYC	4 cut(s)	1110, 1243, 1862, 3417
BauI	CACGAG	1 cut(s)	423
BbrPI	CACGTG	1 cut(s)	166
Bbv12I	GWGCWC	5 cut(s)	204, 662, 862, 1243, 2815
BceAI	ACGGC	3 cut(s)	136, 189, 936
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	6 cut(s)	849, 1406, 1884, 2610, 3107, 3314
BciVI	GTATCC	3 cut(s)	1114, 2376, 2385
BclI	TGATCA	1 cut(s)	3130
BcnI	CCSGG	2 cut(s)	337, 1431
BcoDI	GTCTC	6 cut(s)	60, 1126, 1670, 1740, 3296, 3642
BfaI	CTAG	7 cut(s)	330, 1692, 1713, 1907, 2022, 2165, 2540
BfmI	CTRYAG	3 cut(s)	387, 3081, 3403
BfoI	RGCGCY	3 cut(s)	26, 161, 727
BfuAI	ACCTGC	2 cut(s)	511, 3074
BfuI	GTATCC	3 cut(s)	1114, 2376, 2385
BglI	GCCNNNNNGGC	1 cut(s)	2544
BglII	AGATCT	1 cut(s)	3363
BlnI	CCTAGG	1 cut(s)	2539
BlpI	GCTNAGC	2 cut(s)	1242, 3383
BmcAI	AGTACT	1 cut(s)	44
Bme1390I	CCNGG	8 cut(s)	337, 849, 1406, 1431, 1884, 2610, 3107, 3314
Bme18I	GGWCC	3 cut(s)	1785, 2606, 3069
BmeT110I	CYCGRG	1 cut(s)	791
BmgBI	CACGTC	1 cut(s)	1510
BmgT120I	GGNCC	5 cut(s)	1785, 2606, 2651, 3069, 3443
BmiI	GGNNCC	8 cut(s)	234, 676, 1381, 1650, 1786, 1859, 2076, 3070
BmrFI	CCNGG	8 cut(s)	337, 849, 1406, 1431, 1884, 2610, 3107, 3314
BmrI	ACTGGG	3 cut(s)	2755, 3440, 3551
BmtI	GCTAGC	2 cut(s)	1695, 1910
BmuI	ACTGGG	3 cut(s)	2755, 3440, 3551
BpmI	CTGGAG	5 cut(s)	46, 47, 121, 1302, 1590
Bpu1102I	GCTNAGC	2 cut(s)	1242, 3383
Bpu14I	TTCGAA	1 cut(s)	2670
BpuEI	CTTGAG	4 cut(s)	23, 818, 1463, 3509
BpuMI	CCSGG	2 cut(s)	337, 1431
Bsa29I	ATCGAT	2 cut(s)	612, 2440
BsaAI	YACGTR	2 cut(s)	166, 857
BsaI	GGTCTC	3 cut(s)	60, 1126, 3296
BsaJI	CCNNGG	8 cut(s)	171, 439, 1503, 2539, 2609, 3072, 3340, 3477
Bsc4I	CCNNNNNNNGG	6 cut(s)	445, 1202, 1389, 1883, 1886, 2615
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	7 cut(s)	50, 70, 883, 1682, 2750, 3446, 3546
Bse21I	CCTNAGG	1 cut(s)	1789
Bse3DI	GCAATG	1 cut(s)	226
BseBI	CCWGG	6 cut(s)	849, 1406, 1884, 2610, 3107, 3314
BseCI	ATCGAT	2 cut(s)	612, 2440
BseDI	CCNNGG	8 cut(s)	171, 439, 1503, 2539, 2609, 3072, 3340, 3477
BseGI	GGATG	8 cut(s)	298, 323, 649, 1171, 2047, 2260, 2710, 3214
BseLI	CCNNNNNNNGG	6 cut(s)	445, 1202, 1389, 1883, 1886, 2615
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	7 cut(s)	938, 1256, 1617, 1803, 3366, 3397, 3480
BseNI	ACTGG	7 cut(s)	50, 70, 883, 1682, 2750, 3446, 3546
BseRI	GAGGAG	6 cut(s)	290, 453, 918, 1869, 3314, 3506
BseSI	GKGCMC	2 cut(s)	2815, 3548
BseYI	CCCAGC	1 cut(s)	3410
BsgI	GTGCAG	4 cut(s)	146, 266, 2244, 2885
BshFI	GGCC	7 cut(s)	176, 824, 951, 1409, 2652, 3312, 3444
BshVI	ATCGAT	2 cut(s)	612, 2440
BsiHKAI	GWGCWC	5 cut(s)	204, 662, 862, 1243, 2815
BsiHKCI	CYCGRG	1 cut(s)	791
BsiSI	CCGG	3 cut(s)	155, 336, 1431
BslFI	GGGAC	4 cut(s)	99, 1253, 1798, 3082
BslI	CCNNNNNNNGG	6 cut(s)	445, 1202, 1389, 1883, 1886, 2615
BsmAI	GTCTC	6 cut(s)	60, 1126, 1670, 1740, 3296, 3642
BsmFI	GGGAC	4 cut(s)	99, 1253, 1798, 3082
BsmI	GAATGC	1 cut(s)	2532
BsnI	GGCC	7 cut(s)	176, 824, 951, 1409, 2652, 3312, 3444
Bso31I	GGTCTC	3 cut(s)	60, 1126, 3296
BsoBI	CYCGRG	1 cut(s)	791
Bsp119I	TTCGAA	1 cut(s)	2670
Bsp1286I	GDGCHC	9 cut(s)	204, 662, 862, 1110, 1243, 1862, 2815, 3417, 3548
Bsp1720I	GCTNAGC	2 cut(s)	1242, 3383
BspACI	CCGC	6 cut(s)	152, 868, 931, 2547, 3194, 3283
BspANI	GGCC	7 cut(s)	176, 824, 951, 1409, 2652, 3312, 3444
BspCNI	CTCAG	7 cut(s)	937, 1255, 1616, 1802, 3367, 3396, 3479
BspDI	ATCGAT	2 cut(s)	612, 2440
BspHI	TCATGA	1 cut(s)	3133
BspLI	GGNNCC	8 cut(s)	234, 676, 1381, 1650, 1786, 1859, 2076, 3070
BspMAI	CTGCAG	1 cut(s)	3085
BspMI	ACCTGC	2 cut(s)	511, 3074
BspOI	GCTAGC	2 cut(s)	1695, 1910
BspPI	GGATC	7 cut(s)	1374, 1387, 1400, 1643, 1656, 1971, 3333
BspQI	GCTCTTC	2 cut(s)	867, 3534
BspT104I	TTCGAA	1 cut(s)	2670
BspTNI	GGTCTC	3 cut(s)	60, 1126, 3296
BsrDI	GCAATG	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	7 cut(s)	50, 70, 883, 1682, 2750, 3446, 3546
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	8 cut(s)	171, 439, 1503, 2539, 2609, 3072, 3340, 3477
BssNAI	GTATAC	1 cut(s)	33
BssSI	CACGAG	1 cut(s)	423
BssT1I	CCWWGG	5 cut(s)	439, 1503, 2539, 3072, 3340
Bst1107I	GTATAC	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	6 cut(s)	849, 1406, 1884, 2610, 3107, 3314
Bst6I	CTCTTC	6 cut(s)	867, 1043, 1296, 1402, 2862, 3534
BstBAI	YACGTR	2 cut(s)	166, 857
BstBI	TTCGAA	1 cut(s)	2670
BstDSI	CCRYGG	2 cut(s)	171, 3477
BstENI	CCTNNNNNAGG	1 cut(s)	1387
BstF5I	GGATG	8 cut(s)	298, 323, 649, 1171, 2047, 2260, 2710, 3214
BstH2I	RGCGCY	3 cut(s)	26, 161, 727
BstHHI	GCGC	3 cut(s)	25, 160, 726
BstMAI	GTCTC	6 cut(s)	60, 1126, 1670, 1740, 3296, 3642
BstMWI	GCNNNNNNNGC	7 cut(s)	157, 160, 455, 653, 704, 2544, 3393
BstNI	CCWGG	6 cut(s)	849, 1406, 1884, 2610, 3107, 3314
BstNSI	RCATGY	6 cut(s)	1193, 2301, 2384, 2468, 3029, 3062
BstSCI	CCNGG	8 cut(s)	335, 847, 1404, 1429, 1882, 2608, 3105, 3312
BstSFI	CTRYAG	3 cut(s)	387, 3081, 3403
BstSLI	GKGCMC	2 cut(s)	2815, 3548
BstX2I	RGATCY	5 cut(s)	1379, 1392, 1648, 1963, 3363
BstYI	RGATCY	5 cut(s)	1379, 1392, 1648, 1963, 3363
BstZ17I	GTATAC	1 cut(s)	33
Bsu15I	ATCGAT	2 cut(s)	612, 2440
Bsu36I	CCTNAGG	1 cut(s)	1789
BsuI	GTATCC	3 cut(s)	1114, 2376, 2385
BsuRI	GGCC	7 cut(s)	176, 824, 951, 1409, 2652, 3312, 3444
BsuTUI	ATCGAT	2 cut(s)	612, 2440
BtgI	CCRYGG	2 cut(s)	171, 3477
BtgZI	GCGATG	2 cut(s)	138, 2561
BtrI	CACGTC	1 cut(s)	1510
BtsCI	GGATG	8 cut(s)	298, 323, 649, 1171, 2047, 2260, 2710, 3214
BtsI	GCAGTG	2 cut(s)	1253, 2832
BtsIMutI	CAGTG	7 cut(s)	768, 1253, 2287, 2743, 2832, 3130, 3412
BveI	ACCTGC	2 cut(s)	511, 3074
CaiI	CAGNNNCTG	1 cut(s)	2231
CciI	TCATGA	1 cut(s)	3133
CfoI	GCGC	3 cut(s)	25, 160, 726
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	5 cut(s)	1785, 2606, 2651, 3069, 3443
ClaI	ATCGAT	2 cut(s)	612, 2440
CseI	GACGC	1 cut(s)	2603
Csp6I	GTAC	5 cut(s)	43, 1749, 1975, 2037, 3456
CviQI	GTAC	5 cut(s)	43, 1749, 1975, 2037, 3456
DraI	TTTAAA	1 cut(s)	2478
EaeI	YGGCCR	2 cut(s)	174, 1407
Eam1104I	CTCTTC	6 cut(s)	867, 1043, 1296, 1402, 2862, 3534
EarI	CTCTTC	6 cut(s)	867, 1043, 1296, 1402, 2862, 3534
EciI	GGCGGA	1 cut(s)	2562
Ecl136II	GAGCTC	1 cut(s)	1241
Eco130I	CCWWGG	5 cut(s)	439, 1503, 2539, 3072, 3340
Eco24I	GRGCYC	4 cut(s)	1110, 1243, 1862, 3417
Eco31I	GGTCTC	3 cut(s)	60, 1126, 3296
Eco47I	GGWCC	3 cut(s)	1785, 2606, 3069
Eco47III	AGCGCT	2 cut(s)	24, 725
Eco53kI	GAGCTC	1 cut(s)	1241
Eco57I	CTGAAG	7 cut(s)	960, 1277, 1355, 1751, 2099, 3534, 3587
Eco72I	CACGTG	1 cut(s)	166
Eco81I	CCTNAGG	1 cut(s)	1789
Eco88I	CYCGRG	1 cut(s)	791
EcoICRI	GAGCTC	1 cut(s)	1241
EcoNI	CCTNNNNNAGG	1 cut(s)	1387
EcoO109I	RGGNCCY	2 cut(s)	1785, 2651
EcoRI	GAATTC	3 cut(s)	280, 1007, 3276
EcoRII	CCWGG	6 cut(s)	847, 1404, 1882, 2608, 3105, 3312
EcoT14I	CCWWGG	5 cut(s)	439, 1503, 2539, 3072, 3340
EcoT22I	ATGCAT	1 cut(s)	2148
EcoT38I	GRGCYC	4 cut(s)	1110, 1243, 1862, 3417
ErhI	CCWWGG	5 cut(s)	439, 1503, 2539, 3072, 3340
FaqI	GGGAC	4 cut(s)	99, 1253, 1798, 3082
FbaI	TGATCA	1 cut(s)	3130
FblI	GTMKAC	3 cut(s)	32, 975, 2277
FokI	GGATG	8 cut(s)	305, 310, 656, 1178, 2054, 2267, 2717, 3221
FriOI	GRGCYC	4 cut(s)	1110, 1243, 1862, 3417
FspBI	CTAG	7 cut(s)	330, 1692, 1713, 1907, 2022, 2165, 2540
GlaI	GCGC	3 cut(s)	24, 159, 725
GsaI	CCCAGC	1 cut(s)	3414
GsuI	CTGGAG	5 cut(s)	46, 47, 121, 1302, 1590
HaeII	RGCGCY	3 cut(s)	26, 161, 727
HaeIII	GGCC	7 cut(s)	176, 824, 951, 1409, 2652, 3312, 3444
HapII	CCGG	3 cut(s)	155, 336, 1431
HgaI	GACGC	1 cut(s)	2603
HhaI	GCGC	3 cut(s)	25, 160, 726
Hin6I	GCGC	3 cut(s)	23, 158, 724
HinP1I	GCGC	3 cut(s)	23, 158, 724
HincII	GTYRAC	3 cut(s)	936, 1679, 3250
HindII	GTYRAC	3 cut(s)	936, 1679, 3250
HindIII	AAGCTT	2 cut(s)	750, 1013
HpaII	CCGG	3 cut(s)	155, 336, 1431
HphI	GGTGA	6 cut(s)	617, 1465, 1602, 2116, 2998, 3121
HpyCH4IV	ACGT	6 cut(s)	165, 856, 1509, 1745, 2048, 2248
HpyF10VI	GCNNNNNNNGC	7 cut(s)	157, 160, 455, 653, 704, 2544, 3393
HpySE526I	ACGT	6 cut(s)	165, 856, 1509, 1745, 2048, 2248
HspAI	GCGC	3 cut(s)	23, 158, 724
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	3130
LguI	GCTCTTC	2 cut(s)	867, 3534
LmnI	GCTCC	7 cut(s)	207, 338, 721, 1238, 1542, 1571, 1857
MaeI	CTAG	7 cut(s)	330, 1692, 1713, 1907, 2022, 2165, 2540
MaeII	ACGT	6 cut(s)	165, 856, 1509, 1745, 2048, 2248
MfeI	CAATTG	1 cut(s)	966
MflI	RGATCY	5 cut(s)	1379, 1392, 1648, 1963, 3363
MhlI	GDGCHC	9 cut(s)	204, 662, 862, 1110, 1243, 1862, 2815, 3417, 3548
MlyI	GAGTC	3 cut(s)	189, 1616, 3245
MmeI	TCCRAC	5 cut(s)	270, 1990, 2613, 3222, 3276
Mph1103I	ATGCAT	1 cut(s)	2148
MreI	CGCCGGCG	1 cut(s)	154
MroNI	GCCGGC	1 cut(s)	154
MroXI	GAANNNNTTC	1 cut(s)	1595
MseI	TTAA	9 cut(s)	405, 534, 779, 996, 1115, 1865, 2318, 2477, 3291
MslI	CAYNNNNRTG	3 cut(s)	1148, 2456, 3063
MspA1I	CMGCKG	3 cut(s)	931, 1760, 3272
MspI	CCGG	3 cut(s)	155, 336, 1431
MspR9I	CCNGG	8 cut(s)	337, 849, 1406, 1431, 1884, 2610, 3107, 3314
MunI	CAATTG	1 cut(s)	966
Mva1269I	GAATGC	1 cut(s)	2532
MvaI	CCWGG	6 cut(s)	849, 1406, 1884, 2610, 3107, 3314
MwoI	GCNNNNNNNGC	7 cut(s)	157, 160, 455, 653, 704, 2544, 3393
NaeI	GCCGGC	1 cut(s)	156
NciI	CCSGG	2 cut(s)	337, 1431
NgoMIV	GCCGGC	1 cut(s)	154
NheI	GCTAGC	2 cut(s)	1691, 1906
NlaIV	GGNNCC	8 cut(s)	234, 676, 1381, 1650, 1786, 1859, 2076, 3070
NmuCI	GTSAC	5 cut(s)	166, 1032, 1608, 2986, 3109
NsiI	ATGCAT	1 cut(s)	2148
NspI	RCATGY	6 cut(s)	1193, 2301, 2384, 2468, 3029, 3062
NspV	TTCGAA	1 cut(s)	2670
OliI	CACNNNNGTG	1 cut(s)	1148
PagI	TCATGA	1 cut(s)	3133
PaqCI	CACCTGC	1 cut(s)	3074
PciI	ACATGT	3 cut(s)	2380, 2464, 3058
PciSI	GCTCTTC	2 cut(s)	867, 3534
PcsI	WCGNNNNNNNCGW	1 cut(s)	2045
PctI	GAATGC	1 cut(s)	2532
PdiI	GCCGGC	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	1595
PfoI	TCCNGGA	1 cut(s)	335
PleI	GAGTC	3 cut(s)	188, 1615, 3245
PmaCI	CACGTG	1 cut(s)	166
PmlI	CACGTG	1 cut(s)	166
PpsI	GAGTC	3 cut(s)	188, 1615, 3245
Ppu21I	YACGTR	2 cut(s)	166, 857
PpuMI	RGGWCCY	1 cut(s)	1785
PscI	ACATGT	3 cut(s)	2380, 2464, 3058
PsiI	TTATAA	1 cut(s)	2195
Psp124BI	GAGCTC	1 cut(s)	1243
Psp5II	RGGWCCY	1 cut(s)	1785
Psp6I	CCWGG	6 cut(s)	847, 1404, 1882, 2608, 3105, 3312
PspCI	CACGTG	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	3410
PspGI	CCWGG	6 cut(s)	847, 1404, 1882, 2608, 3105, 3312
PspN4I	GGNNCC	8 cut(s)	234, 676, 1381, 1650, 1786, 1859, 2076, 3070
PspPI	GGNCC	5 cut(s)	1785, 2606, 2651, 3069, 3443
PspPPI	RGGWCCY	1 cut(s)	1785
PsrI	GAACNNNNNNTAC	2 cut(s)	837, 869
PstI	CTGCAG	1 cut(s)	3085
PstNI	CAGNNNCTG	1 cut(s)	2231
PsuI	RGATCY	5 cut(s)	1379, 1392, 1648, 1963, 3363
PvuII	CAGCTG	2 cut(s)	1760, 3272
RsaI	GTAC	5 cut(s)	44, 1750, 1976, 2038, 3457
RsaNI	GTAC	5 cut(s)	43, 1749, 1975, 2037, 3456
RseI	CAYNNNNRTG	3 cut(s)	1148, 2456, 3063
SacI	GAGCTC	1 cut(s)	1243
SapI	GCTCTTC	2 cut(s)	867, 3534
SaqAI	TTAA	9 cut(s)	405, 534, 779, 996, 1115, 1865, 2318, 2477, 3291
Sau96I	GGNCC	5 cut(s)	1785, 2606, 2651, 3069, 3443
ScaI	AGTACT	1 cut(s)	44
SchI	GAGTC	3 cut(s)	189, 1616, 3245
ScrFI	CCNGG	8 cut(s)	337, 849, 1406, 1431, 1884, 2610, 3107, 3314
SduI	GDGCHC	9 cut(s)	204, 662, 862, 1110, 1243, 1862, 2815, 3417, 3548
SfcI	CTRYAG	3 cut(s)	387, 3081, 3403
SfuI	TTCGAA	1 cut(s)	2670
SgrAI	CRCCGGYG	1 cut(s)	154
SinI	GGWCC	3 cut(s)	1785, 2606, 3069
SmiMI	CAYNNNNRTG	3 cut(s)	1148, 2456, 3063
SmlI	CTYRAG	4 cut(s)	38, 797, 1478, 3488
SmoI	CTYRAG	4 cut(s)	38, 797, 1478, 3488
SsiI	CCGC	6 cut(s)	152, 868, 931, 2547, 3194, 3283
SspMI	CTAG	7 cut(s)	330, 1692, 1713, 1907, 2022, 2165, 2540
SstI	GAGCTC	1 cut(s)	1243
StyD4I	CCNGG	8 cut(s)	335, 847, 1404, 1429, 1882, 2608, 3105, 3312
StyI	CCWWGG	5 cut(s)	439, 1503, 2539, 3072, 3340
TaiI	ACGT	6 cut(s)	168, 859, 1512, 1748, 2051, 2251
TaqI	TCGA	7 cut(s)	19, 612, 1130, 1740, 2440, 2670, 3262
TatI	WGTACW	3 cut(s)	42, 1748, 3455
TauI	GCSGC	2 cut(s)	154, 3286
Tru1I	TTAA	9 cut(s)	405, 534, 779, 996, 1115, 1865, 2318, 2477, 3291
Tru9I	TTAA	9 cut(s)	405, 534, 779, 996, 1115, 1865, 2318, 2477, 3291
TscAI	CASTG	7 cut(s)	768, 1253, 2287, 2750, 2832, 3130, 3412
TseFI	GTSAC	5 cut(s)	166, 1032, 1608, 2986, 3109
Tsp45I	GTSAC	5 cut(s)	166, 1032, 1608, 2986, 3109
TspGWI	ACGGA	5 cut(s)	103, 656, 1063, 2054, 3550
TspRI	CASTG	7 cut(s)	768, 1253, 2287, 2750, 2832, 3130, 3412
VneI	GTGCAC	1 cut(s)	2811
VpaK11BI	GGWCC	3 cut(s)	1785, 2606, 3069
XagI	CCTNNNNNAGG	1 cut(s)	1387
XapI	RAATTY	9 cut(s)	280, 738, 1007, 1459, 1636, 2638, 3167, 3276, 3427
XceI	RCATGY	6 cut(s)	1193, 2301, 2384, 2468, 3029, 3062
XcmI	CCANNNNNNNNNTGG	3 cut(s)	112, 1231, 2417
XmaJI	CCTAGG	1 cut(s)	2539
XmiI	GTMKAC	3 cut(s)	32, 975, 2277
XmnI	GAANNNNTTC	1 cut(s)	1595
XspI	CTAG	7 cut(s)	330, 1692, 1713, 1907, 2022, 2165, 2540
ZrmI	AGTACT	1 cut(s)	44
Zsp2I	ATGCAT	1 cut(s)	2148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.