Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006813

Physical Location & Seq

Genomic Coordinates Reverse (-)

53282045 .. 53296586

Gene Structure 14542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG333300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2199 bp

ATGTCGGCTTCTTTAGCTGCTTTTGAGCGCCCCCGCCCCGGAGCTTCTAACACGGTCTTCAAGAGTGGCCCATTATTCATATCTTCAAAAGGAATAGGGTGGAAGTCTTGGAAGAAGCGGTGGTTTATCCTCACACGGACTTCTTTGGTTTTCTTTAAAAACGATCCTAGCGCACTTCCACAAAAAGGTGGTGAAGTATATTTGACTTTAGGAGGCATTGACCTGAACAATTCTGGGAGTGTTGTTGTTAGAGAAGATAAAAAGCTGCTGACTGTTTTATTTCCTGATGGACGTGATGGGCGGGCTTTCACTCTTAAGGCTGAGACATCAGAAGACTTGTACGAGTGGAAGACAGCCCTTGAACATGCCCTTGCACAAGCTCCAAGTGCTGCCCTTGTCATGGGGCACAATGGGATTTTCAGAAATGACACAAATGATACAATAGAAGGGTCTTTCCATCAATGGAGGGATAAGCGTCCTGTTAAATCTTTGGTCGTTGGAAGACCAATTCTGCTTGCCCTAGAAGATATTGATGGAGGTCCTTCTTTCCTCGAGAAAGCTCTTCGGTTCCTTGAAAAGTTTGGTACTAAAGTTGAAGGAATTTTGCGACAGTCTGCTGATGTTGAGGAGGTAGAACGCAGGGTACAAGAGTATGAACAAGGCAAGACTGAATTTGATCCTGATGAGGATGCTCATGTTGTTGGTGATTGTGTCAAGCACGTTCTGAGAGAGCTGCCCTCATCTCCAGTACCAGCTTCTTGCTGCACCGCCTTGCTGGAGGCTTATAAAATTGATCGAAAGGAAGCTCGGATCAATGCAATGCGGTCTTCAATATTAGAGACATTTCCTGAACCAAACCGCCGTTTATTACAAAGAATTTTAAAGATGATGCATACCATCTCTTCTCACTCTCATGAGAATCGAATGAATCCATCTGCAGTTGCTGCTTGCATGGCACCCTTGCTCTTACGCCCTCTATTGGCTGGTGAATGTGAGTTGGATGATGACTTTGATATTAATGGTGATAATTCTGCCCAGCTTCTTGCTGCTGCAAATGCTGCCAATAATGCTCAAGCAATCATCACTACGCTTTTGGAGGAGTTTGAAAACATTTTTGATGATGAGAATTTACGACTCTTGTTTCAGGATGAGAATTTACTGCGGTGTTCGATCTCAGCTGATTCTCGAATTGAAAATAGTGGCAGTGATGATTCGTCCGACGATGACAACCTTGATATAAAAGATAATGGTTACCATGATGCCGAAAATGAAGTTGATGTGGAAACAGATGATGACCAAGATCGTGTACACAGTGGGAAATTGAGTGAAAGCAGCGGTTATGCTGGCAGTGACCTCTATGATTATAAGGCATTTGGCGCTGATGATTCTGATGTTGGATCGCCTAATGGAAATCATGGTTCAGCTGAGAGTTCAAAATCAGTTGTTCCTCAACAGAATTCAAACGTCGAAGGGATGGATAGAGGAGGCAAACAGATAAAAGAAAATGAAAATTCAATCAGTGAGAATGGTGAAACGAGCATACCAAGCACGTCACCTGTGGGAGAATCGTACAGATCAATGGGAGAGATTCTATCAGCAATGGATCCAGGGCATCCTTTACCAGTTGTGTCTGAATCAGGAGCTGTTAAGGCAGTGGGTAAAGTAACAGGGTCCAATCATAGTGCAAAGCGAACAGCATTTTGGGGAAGAAGCAATGCAAGAAAGACACTATCCATGGAATCAGTCGATTCTTCTGGAGAGGAAGAGCTGTCTATTCAGAGGCTTGAGATTGCTAAAAATGACCTGCAGCACAGGATTGCAAAAGAGGCTAGAGGAAATGCAATTTTACAAGCTAGCTTGGAGAGAAGAAAGCAAGCTTTACATGAGAGGCGCCTGGCACTGGAACAAGATGTTTCAAGATTACAAGAACAGCTACAAGCTGAAAGAGATCTTAGAGCTGCATTAGAGGTTGGTTTGAGCATGTCTTCTGGACAGTTAGCCAGTTCACGTGGCATGGATTCTAAGACAAGAGCTGAACTTGAGGAGATAGCTCTTGCTGAAGCAGATGTGGCCAGGTTGAAACAGAAAGTTGCAGAACTCCACCATCAACTTAATCAGCAGCGACAGAATCATTATGGTTCTCTCTCTGATGCATGTGACCGTTACCAGAACGTCCAAAATCATAATTCTCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0003674 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006996 GO:0007049 GO:0008047 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009832 GO:0009920 GO:0009987 GO:0016020 GO:0016043 GO:0022402 GO:0022607 GO:0030234 GO:0030695 GO:0031976 GO:0031984 GO:0032506 GO:0034357 GO:0042546 GO:0042651 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050790 GO:0051301 GO:0051336 GO:0051345 GO:0055035 GO:0060589 GO:0061640 GO:0065007 GO:0065009 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0098772 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lzipper-MIP1 PH RhoGAP

Protein Analysis

732

Amino Acids

80.71

Weight (kDa)

5.12

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH	PF00169	20 - 124	1.9e-13	PH domain
RhoGAP	PF00620	181 - 325	2.1e-34	RhoGAP domain
Lzipper-MIP1	PF14389	627 - 707	1.5e-21	Leucine-zipper of ternary complex factor MIP1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19390 AT5G19390 AT5G19390 AT5G19390
fragaria_vesca	FvH4_3g27830 FvH4_3g27830 FvH4_3g27830 FvH4_3g27830
malus_domestica	MD03G1165400.v1.1 MD11G1184700.v1.1
prunus_persica	Prupe.4G265200_v2.0.a1 Prupe.4G265200_v2.0.a1 Prupe.4G265200_v2.0.a1 Prupe.4G265300_v2.0.a1
pyrus_communis	pycom03g11990 pycom12g08810
rosa_chinensis	RchiOBHm_Chr5g0050541
rosa_laevigata	RLG00000034705
rosa_multiflora	Rmu_sc0004301.1_g000009
rosa_roxburghii	Rroxscaffold_1G00030350
rosa_rugosa	Rorug05G0261400
rosa_samantha	Rh5AG333300 Rh5BG343200 Rh5CG370800 Rh5DG355900
rosa_wichuraiana	Rw5G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	786, 1365
Acc36I	ACCTGC	1 cut(s)	1812
AccB1I	GGYRCC	2 cut(s)	955, 1890
AciI	CCGC	8 cut(s)	34, 118, 301, 768, 823, 859, 1162, 1335
AclWI	GGATC	6 cut(s)	158, 671, 818, 1405, 1598, 1611
AcoI	YGGCCR	1 cut(s)	2070
AcsI	RAATTY	7 cut(s)	600, 671, 876, 1126, 1153, 1456, 1510
AcuI	CTGAAG	1 cut(s)	2079
AcvI	CACGTG	1 cut(s)	2009
AcyI	GRCGYC	1 cut(s)	1891
AfaI	GTAC	6 cut(s)	341, 586, 645, 750, 1308, 1571
AfiI	CCNNNNNNNGG	5 cut(s)	38, 185, 400, 979, 1900
AflII	CTTAAG	1 cut(s)	314
AjiI	CACGTC	2 cut(s)	293, 1551
AjnI	CCWGG	3 cut(s)	1606, 1893, 2072
AjuI	GAANNNNNNNTTGG	2 cut(s)	1684, 1716
Alw26I	GTCTC	2 cut(s)	317, 833
AlwI	GGATC	6 cut(s)	158, 671, 818, 1405, 1598, 1611
AlwNI	CAGNNNCTG	2 cut(s)	944, 1643
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	2 cut(s)	67, 2070
ApoI	RAATTY	7 cut(s)	600, 671, 876, 1126, 1153, 1456, 1510
AseI	ATTAAT	1 cut(s)	1017
AspLEI	GCGC	4 cut(s)	30, 173, 1379, 1893
AspS9I	GGNCC	3 cut(s)	68, 539, 1671
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	6 cut(s)	203, 716, 998, 1034, 1541, 1545
AsuNHI	GCTAGC	1 cut(s)	1853
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	2 cut(s)	539, 1671
BaeGI	GKGCMC	1 cut(s)	408
BaeI	ACNNNNGTAYC	4 cut(s)	576, 609, 635, 668
BalI	TGGCCA	1 cut(s)	2072
BamHI	GGATCC	1 cut(s)	1603
BanI	GGYRCC	2 cut(s)	955, 1890
BbrPI	CACGTG	1 cut(s)	2009
BbsI	GAAGAC	6 cut(s)	49, 339, 356, 508, 819, 1977
BccI	CCATC	8 cut(s)	281, 290, 465, 527, 905, 940, 1468, 2112
BceAI	ACGGC	1 cut(s)	846
BciT130I	CCWGG	3 cut(s)	1608, 1895, 2074
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	317, 833
BfaI	CTAG	4 cut(s)	168, 521, 1830, 1854
BfmI	CTRYAG	2 cut(s)	936, 1805
BfoI	RGCGCY	3 cut(s)	31, 1380, 1894
BfrI	CTTAAG	1 cut(s)	314
BfuAI	ACCTGC	1 cut(s)	1812
BglII	AGATCT	1 cut(s)	1948
Bme1390I	CCNGG	4 cut(s)	39, 1608, 1895, 2074
Bme18I	GGWCC	2 cut(s)	539, 1671
BmeT110I	CYCGRG	1 cut(s)	551
BmgBI	CACGTC	2 cut(s)	293, 1551
BmgT120I	GGNCC	3 cut(s)	68, 539, 1671
BmiI	GGNNCC	5 cut(s)	569, 957, 1605, 1672, 1892
BmrFI	CCNGG	4 cut(s)	39, 1608, 1895, 2074
BmsI	GCATC	5 cut(s)	679, 879, 1249, 1621, 2140
BmtI	GCTAGC	1 cut(s)	1857
BpiI	GAAGAC	6 cut(s)	49, 339, 356, 508, 819, 1977
BplI	GAGNNNNNCTC	2 cut(s)	722, 754
BpmI	CTGGAG	3 cut(s)	729, 797, 1776
BpuEI	CTTGAG	3 cut(s)	1056, 1805, 2060
BpuMI	CCSGG	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	2009
BsaHI	GRCGYC	1 cut(s)	1891
BsaJI	CCNNGG	3 cut(s)	37, 1607, 1734
Bsc4I	CCNNNNNNNGG	5 cut(s)	38, 185, 400, 979, 1900
Bse1I	ACTGG	4 cut(s)	746, 1622, 1905, 2001
Bse3DI	GCAATG	3 cut(s)	825, 1605, 1720
BseBI	CCWGG	3 cut(s)	1608, 1895, 2074
BseDI	CCNNGG	3 cut(s)	37, 1607, 1734
BseGI	GGATG	5 cut(s)	694, 1006, 1153, 1479, 1612
BseLI	CCNNNNNNNGG	5 cut(s)	38, 185, 400, 979, 1900
BseMI	GCAATG	3 cut(s)	825, 1605, 1720
BseMII	CTCAG	4 cut(s)	312, 716, 1188, 1416
BseNI	ACTGG	4 cut(s)	746, 1622, 1905, 2001
BseRI	GAGGAG	4 cut(s)	641, 1112, 1497, 2057
BseSI	GKGCMC	1 cut(s)	408
BseYI	CCCAGC	1 cut(s)	1035
BsgI	GTGCAG	1 cut(s)	748
BshFI	GGCC	2 cut(s)	69, 2072
BshNI	GGYRCC	2 cut(s)	955, 1890
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	5 cut(s)	38, 185, 400, 979, 1900
BsmAI	GTCTC	2 cut(s)	317, 833
BsnI	GGCC	2 cut(s)	69, 2072
BsoBI	CYCGRG	1 cut(s)	551
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp1407I	TGTACA	1 cut(s)	1306
Bsp19I	CCATGG	1 cut(s)	1734
BspACI	CCGC	8 cut(s)	34, 118, 301, 768, 823, 859, 1162, 1335
BspANI	GGCC	2 cut(s)	69, 2072
BspCNI	CTCAG	4 cut(s)	313, 717, 1187, 1417
BspHI	TCATGA	1 cut(s)	913
BspLI	GGNNCC	5 cut(s)	569, 957, 1605, 1672, 1892
BspMAI	CTGCAG	2 cut(s)	940, 1809
BspMI	ACCTGC	1 cut(s)	1812
BspOI	GCTAGC	1 cut(s)	1857
BspPI	GGATC	6 cut(s)	158, 671, 818, 1405, 1598, 1611
BspQI	GCTCTTC	2 cut(s)	567, 1758
BspT107I	GGYRCC	2 cut(s)	955, 1890
BspTI	CTTAAG	1 cut(s)	314
BsrDI	GCAATG	3 cut(s)	825, 1605, 1720
BsrGI	TGTACA	1 cut(s)	1306
BsrI	ACTGG	4 cut(s)	746, 1622, 1905, 2001
BssECI	CCNNGG	3 cut(s)	37, 1607, 1734
BssNI	GRCGYC	1 cut(s)	1891
BssT1I	CCWWGG	1 cut(s)	1734
Bst2UI	CCWGG	3 cut(s)	1608, 1895, 2074
Bst4CI	ACNGT	7 cut(s)	55, 274, 612, 1313, 1995, 2162, 2196
Bst6I	CTCTTC	3 cut(s)	567, 907, 1758
BstACI	GRCGYC	1 cut(s)	1891
BstAFI	CTTAAG	1 cut(s)	314
BstAPI	GCANNNNNTGC	2 cut(s)	944, 1058
BstAUI	TGTACA	1 cut(s)	1306
BstBAI	YACGTR	1 cut(s)	2009
BstC8I	GCNNGC	6 cut(s)	303, 516, 949, 1345, 1855, 1875
BstDEI	CTNAG	6 cut(s)	321, 725, 1174, 1425, 1952, 2022
BstDSI	CCRYGG	1 cut(s)	1734
BstEII	GGTNACC	1 cut(s)	1250
BstF5I	GGATG	5 cut(s)	694, 1006, 1153, 1479, 1612
BstH2I	RGCGCY	3 cut(s)	31, 1380, 1894
BstHHI	GCGC	4 cut(s)	30, 173, 1379, 1893
BstMAI	GTCTC	2 cut(s)	317, 833
BstNI	CCWGG	3 cut(s)	1608, 1895, 2074
BstNSI	RCATGY	3 cut(s)	368, 1984, 2157
BstPI	GGTNACC	1 cut(s)	1250
BstSCI	CCNGG	4 cut(s)	37, 1606, 1893, 2072
BstSFI	CTRYAG	2 cut(s)	936, 1805
BstSLI	GKGCMC	1 cut(s)	408
BstV2I	GAAGAC	6 cut(s)	49, 339, 356, 508, 819, 1977
BstX2I	RGATCY	2 cut(s)	1603, 1948
BstYI	RGATCY	2 cut(s)	1603, 1948
BsuRI	GGCC	2 cut(s)	69, 2072
BtgI	CCRYGG	1 cut(s)	1734
BtrI	CACGTC	2 cut(s)	293, 1551
BtsCI	GGATG	5 cut(s)	694, 1006, 1153, 1479, 1612
BtsI	GCAGTG	3 cut(s)	1210, 1354, 1659
BtsIMutI	CAGTG	6 cut(s)	1210, 1318, 1354, 1525, 1659, 1898
BveI	ACCTGC	1 cut(s)	1812
Cac8I	GCNNGC	6 cut(s)	303, 516, 949, 1345, 1855, 1875
CaiI	CAGNNNCTG	2 cut(s)	944, 1643
CciI	TCATGA	1 cut(s)	913
CfoI	GCGC	4 cut(s)	30, 173, 1379, 1893
Cfr13I	GGNCC	3 cut(s)	68, 539, 1671
CseI	GACGC	1 cut(s)	464
Csp6I	GTAC	6 cut(s)	340, 585, 644, 749, 1307, 1570
CviQI	GTAC	6 cut(s)	340, 585, 644, 749, 1307, 1570
DdeI	CTNAG	6 cut(s)	321, 725, 1174, 1425, 1952, 2022
DinI	GGCGCC	1 cut(s)	1892
DraI	TTTAAA	2 cut(s)	157, 882
EaeI	YGGCCR	1 cut(s)	2070
Eam1104I	CTCTTC	3 cut(s)	567, 907, 1758
EarI	CTCTTC	3 cut(s)	567, 907, 1758
Eco130I	CCWWGG	1 cut(s)	1734
Eco47I	GGWCC	2 cut(s)	539, 1671
Eco57I	CTGAAG	1 cut(s)	2079
Eco72I	CACGTG	1 cut(s)	2009
Eco88I	CYCGRG	1 cut(s)	551
Eco91I	GGTNACC	1 cut(s)	1250
EcoO109I	RGGNCCY	1 cut(s)	539
EcoO65I	GGTNACC	1 cut(s)	1250
EcoRI	GAATTC	1 cut(s)	1456
EcoRII	CCWGG	3 cut(s)	1606, 1893, 2072
EcoT14I	CCWWGG	1 cut(s)	1734
EcoT22I	ATGCAT	2 cut(s)	894, 2155
EgeI	GGCGCC	1 cut(s)	1892
EheI	GGCGCC	1 cut(s)	1892
ErhI	CCWWGG	1 cut(s)	1734
FauI	CCCGC	2 cut(s)	41, 294
FokI	GGATG	5 cut(s)	701, 1013, 1160, 1486, 1599
FspBI	CTAG	4 cut(s)	168, 521, 1830, 1854
GlaI	GCGC	4 cut(s)	29, 172, 1378, 1892
GsaI	CCCAGC	1 cut(s)	1039
GsuI	CTGGAG	3 cut(s)	729, 797, 1776
HaeII	RGCGCY	3 cut(s)	31, 1380, 1894
HaeIII	GGCC	2 cut(s)	69, 2072
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	1 cut(s)	464
HhaI	GCGC	4 cut(s)	30, 173, 1379, 1893
Hin1I	GRCGYC	1 cut(s)	1891
Hin6I	GCGC	4 cut(s)	28, 171, 1377, 1891
HinP1I	GCGC	4 cut(s)	28, 171, 1377, 1891
HindIII	AAGCTT	1 cut(s)	1875
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	6 cut(s)	203, 716, 998, 1034, 1541, 1545
Hpy166II	GTNNAC	3 cut(s)	1307, 1309, 2006
Hpy188I	TCNGA	9 cut(s)	331, 422, 726, 810, 1219, 1390, 1633, 1779, 2149
Hpy8I	GTNNAC	3 cut(s)	1307, 1309, 2006
Hpy99I	CGWCG	2 cut(s)	1223, 1469
HpyAV	CCTTC	4 cut(s)	440, 552, 590, 1463
HpyCH4III	ACNGT	7 cut(s)	55, 274, 612, 1313, 1995, 2162, 2196
HpyCH4IV	ACGT	6 cut(s)	292, 720, 1464, 1550, 2008, 2172
HpyF3I	CTNAG	6 cut(s)	321, 725, 1174, 1425, 1952, 2022
HpySE526I	ACGT	6 cut(s)	292, 720, 1464, 1550, 2008, 2172
Hsp92I	GRCGYC	1 cut(s)	1891
HspAI	GCGC	4 cut(s)	28, 171, 1377, 1891
KasI	GGCGCC	1 cut(s)	1890
LguI	GCTCTTC	2 cut(s)	567, 1758
LmnI	GCTCC	3 cut(s)	41, 385, 1640
LweI	GCATC	5 cut(s)	679, 879, 1249, 1621, 2140
MaeI	CTAG	4 cut(s)	168, 521, 1830, 1854
MaeII	ACGT	6 cut(s)	292, 720, 1464, 1550, 2008, 2172
MaeIII	GTNAC	6 cut(s)	1250, 1349, 1551, 1663, 2156, 2162
MflI	RGATCY	2 cut(s)	1603, 1948
MhlI	GDGCHC	1 cut(s)	408
MlsI	TGGCCA	1 cut(s)	2072
MluNI	TGGCCA	1 cut(s)	2072
Mly113I	GGCGCC	1 cut(s)	1891
MlyI	GAGTC	1 cut(s)	1128
MmeI	TCCRAC	4 cut(s)	478, 978, 1242, 1375
Mox20I	TGGCCA	1 cut(s)	2072
Mph1103I	ATGCAT	2 cut(s)	894, 2155
MscI	TGGCCA	1 cut(s)	2072
MseI	TTAA	7 cut(s)	156, 315, 483, 881, 1017, 1647, 2112
MslI	CAYNNNNRTG	1 cut(s)	912
Msp20I	TGGCCA	1 cut(s)	2072
MspA1I	CMGCKG	3 cut(s)	1178, 1335, 1424
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	4 cut(s)	39, 1608, 1895, 2074
MvaI	CCWGG	3 cut(s)	1608, 1895, 2074
NarI	GGCGCC	1 cut(s)	1891
NciI	CCSGG	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	1734
NheI	GCTAGC	1 cut(s)	1853
NlaIV	GGNNCC	5 cut(s)	569, 957, 1605, 1672, 1892
NmuCI	GTSAC	3 cut(s)	1349, 1551, 2156
NsiI	ATGCAT	2 cut(s)	894, 2155
NspI	RCATGY	3 cut(s)	368, 1984, 2157
PaeR7I	CTCGAG	1 cut(s)	551
PagI	TCATGA	1 cut(s)	913
PciSI	GCTCTTC	2 cut(s)	567, 1758
PleI	GAGTC	1 cut(s)	1128
PluTI	GGCGCC	1 cut(s)	1894
PmaCI	CACGTG	1 cut(s)	2009
PmlI	CACGTG	1 cut(s)	2009
PpsI	GAGTC	1 cut(s)	1128
Ppu21I	YACGTR	1 cut(s)	2009
PpuMI	RGGWCCY	1 cut(s)	539
PshBI	ATTAAT	1 cut(s)	1017
PsiI	TTATAA	2 cut(s)	786, 1365
Psp5II	RGGWCCY	1 cut(s)	539
Psp6I	CCWGG	3 cut(s)	1606, 1893, 2072
PspCI	CACGTG	1 cut(s)	2009
PspEI	GGTNACC	1 cut(s)	1250
PspFI	CCCAGC	1 cut(s)	1035
PspGI	CCWGG	3 cut(s)	1606, 1893, 2072
PspN4I	GGNNCC	5 cut(s)	569, 957, 1605, 1672, 1892
PspPI	GGNCC	3 cut(s)	68, 539, 1671
PspPPI	RGGWCCY	1 cut(s)	539
PsrI	GAACNNNNNNTAC	2 cut(s)	627, 659
PstI	CTGCAG	2 cut(s)	940, 1809
PstNI	CAGNNNCTG	2 cut(s)	944, 1643
PsuI	RGATCY	2 cut(s)	1603, 1948
PvuII	CAGCTG	2 cut(s)	1178, 1424
RsaI	GTAC	6 cut(s)	341, 586, 645, 750, 1308, 1571
RsaNI	GTAC	6 cut(s)	340, 585, 644, 749, 1307, 1570
RseI	CAYNNNNRTG	1 cut(s)	912
SapI	GCTCTTC	2 cut(s)	567, 1758
SaqAI	TTAA	7 cut(s)	156, 315, 483, 881, 1017, 1647, 2112
Sau96I	GGNCC	3 cut(s)	68, 539, 1671
SchI	GAGTC	1 cut(s)	1128
ScrFI	CCNGG	4 cut(s)	39, 1608, 1895, 2074
SduI	GDGCHC	1 cut(s)	408
SfaNI	GCATC	5 cut(s)	679, 879, 1249, 1621, 2140
SfcI	CTRYAG	2 cut(s)	936, 1805
SfoI	GGCGCC	1 cut(s)	1892
Sfr274I	CTCGAG	1 cut(s)	551
SinI	GGWCC	2 cut(s)	539, 1671
SlaI	CTCGAG	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	912
SmlI	CTYRAG	5 cut(s)	314, 551, 1071, 1784, 2039
SmoI	CTYRAG	5 cut(s)	314, 551, 1071, 1784, 2039
SsiI	CCGC	8 cut(s)	34, 118, 301, 768, 823, 859, 1162, 1335
SspDI	GGCGCC	1 cut(s)	1890
SspI	AATATT	1 cut(s)	834
SspMI	CTAG	4 cut(s)	168, 521, 1830, 1854
StyD4I	CCNGG	4 cut(s)	37, 1606, 1893, 2072
StyI	CCWWGG	1 cut(s)	1734
TaaI	ACNGT	7 cut(s)	55, 274, 612, 1313, 1995, 2162, 2196
TaiI	ACGT	6 cut(s)	295, 723, 1467, 1553, 2011, 2175
TaqI	TCGA	7 cut(s)	552, 796, 922, 1169, 1186, 1467, 1746
TatI	WGTACW	1 cut(s)	1306
Tru1I	TTAA	7 cut(s)	156, 315, 483, 881, 1017, 1647, 2112
Tru9I	TTAA	7 cut(s)	156, 315, 483, 881, 1017, 1647, 2112
TscAI	CASTG	6 cut(s)	1210, 1318, 1354, 1525, 1659, 1905
TseFI	GTSAC	3 cut(s)	1349, 1551, 2156
Tsp45I	GTSAC	3 cut(s)	1349, 1551, 2156
TspDTI	ATGAA	5 cut(s)	67, 669, 941, 1284, 1521
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	6 cut(s)	1210, 1318, 1354, 1525, 1659, 1905
Vha464I	CTTAAG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	539, 1671
VspI	ATTAAT	1 cut(s)	1017
XapI	RAATTY	7 cut(s)	600, 671, 876, 1126, 1153, 1456, 1510
XceI	RCATGY	3 cut(s)	368, 1984, 2157
XhoI	CTCGAG	1 cut(s)	551
XspI	CTAG	4 cut(s)	168, 521, 1830, 1854
Zsp2I	ATGCAT	2 cut(s)	894, 2155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.