Prupe.4G282400_v2.0.a1

Regulator of chromosome condensation (RCC1) repeat

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
24088691 .. 24096127
7437 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G282400.1

Sequence Viewer

Length: 1242 bp
ATGTGGATTTGCAGAACGAGGACGAGAGTGAATTTGGGTTGCTTGGTGAGAAGAAGGTGGTTGAGCAGTGGCAGTGGGAGTGAGGAGGAAGTGAAGGGGAAGAGGATCGCAGCGGTGTGGGGGAACGGGGACTATGGGAGGCTTGGGCTCGGGAGCTTGGACTCTCAGTGGAAGCCTGCCCCTTTGCTTCCCTCAGCCTTTGGCGACCAATGCCTTGAAGCCATCGCTTGCGGTGGCGCTCACACTCTCTTCTTAACCCGCTCCGGCCGCCTTTATGCAACTGGTCTCAATGATTTTGGACAGCTTGGAGTTCATGATGATATAGCTTATACTAATAAGCCCATAGAGGTTTCTGGAATTGACAAGGAAATTGTTCAAATTTCAGCTGGGTATCATCACTCTTGTGCCATTACAGCAGAAGGAGAATTGTACATGTGGGGGAAGAACTCAAATGGGCAACTGGGCCTCGGAAAAAGAGCGGCAAAAGTAGTTTCTCTTCCAACCAAAGTTGAATGCTTGGCTGGAATCACCATGAAGATGGCAGCTTTGGGATCAGAGCACTCAGTGGCTGTTGCTGATGGAGGCGAGTCCTTAAGTTGGGGAGGAGGCTCTGGAAGACTTGGTCATGGCCACGAATCAGGCATTCTAGGAATTTTCAAAAGTACCAGGTGCGAATATACACCACGGCTTATCAAGAAACTTGAAGGGACCAAGGTTAAAAAAGTTGCTGCTGGAATGCTGCATTCAGCATGCATTGATGAAAATGGATCCGTATTCATATTTGATGAAAGAGCTCTAGATAAAGTGGGGTCTGGACCGAGGAGCAAACTGCCCAGCTCAGAAGAAGTTGCATGTGGTGGCTATCACACATGCGTCTTAACAAGTGGTGGAGACCTGTACAGTTGGGGTTCAAATGAAAATGGGTGCCTTGGCGTTGGTACTACAGATGTTTATCATCAGCCAGAAAGAGTTCAGGGTCCTTTTTTGAAATATCCTGTCGTCAAGGTTTCTTGTGGTTGGAAGCATACTGCAGCAATTTCTGAAGGCAATATTTTCACATGGGGTTGGGGAGGTTCCCATGGAACATTTTCTGTAGACGGACATTCTTCTGGAGGACAATTGGGTCATGGAACTGATGTTGACTACATAAGACCTACAAAGGTTACTTTTGGGAAGAATGTGAAAGCACTACAAGTATCGTGTGGATTCAATCACACTGGTACTGTACTTGAATACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

414

Amino Acids

43.92

Weight (kDa)

8.34

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1122
AccB1I GGYRCC 1 cut(s) 924
AccBSI CCGCTC 2 cut(s) 261, 479
AccI GTMKAC 1 cut(s) 1095
AciI CCGC 5 cut(s) 113, 231, 259, 268, 479
AclWI GGATC 4 cut(s) 113, 559, 762, 775
AcoI YGGCCR 2 cut(s) 265, 628
AcsI RAATTY 3 cut(s) 31, 378, 651
AcuI CTGAAG 1 cut(s) 1062
AdeI CACNNNGTG 1 cut(s) 565
AfaI GTAC 6 cut(s) 431, 664, 899, 940, 1222, 1227
AfiI CCNNNNNNNGG 1 cut(s) 597
AflII CTTAAG 1 cut(s) 592
AflIII ACRYGT 1 cut(s) 432
AgsI TTSAA 9 cut(s) 218, 377, 512, 658, 704, 912, 988, 1210, 1232
AjnI CCWGG 1 cut(s) 665
AleI CACNNNNGTG 1 cut(s) 402
AluBI AGCT 7 cut(s) 156, 304, 326, 386, 545, 794, 837
AluI AGCT 7 cut(s) 156, 304, 326, 386, 545, 794, 837
Alw21I GWGCWC 2 cut(s) 561, 796
Alw26I GTCTC 2 cut(s) 290, 885
AlwI GGATC 4 cut(s) 113, 559, 762, 775
AlwNI CAGNNNCTG 1 cut(s) 569
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 3 cut(s) 265, 463, 628
ApeKI GCWGC 5 cut(s) 110, 542, 728, 739, 1031
ApoI RAATTY 3 cut(s) 31, 378, 651
Asp700I GAANNNNTTC 3 cut(s) 372, 969, 1087
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 4 cut(s) 463, 708, 815, 977
AsuHPI GGTGA 2 cut(s) 58, 520
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 3 cut(s) 708, 815, 977
BalI TGGCCA 1 cut(s) 630
BamHI GGATCC 1 cut(s) 767
BanI GGYRCC 1 cut(s) 924
BanII GRGCYC 2 cut(s) 150, 796
BarI GAAGNNNNNNTAC 2 cut(s) 480, 512
BbsI GAAGAC 1 cut(s) 622
Bbv12I GWGCWC 2 cut(s) 561, 796
BbvCI CCTCAGC 1 cut(s) 193
BbvI GCAGC 5 cut(s) 122, 554, 715, 726, 1043
BccI CCATC 3 cut(s) 230, 532, 572
BceAI ACGGC 1 cut(s) 701
BciT130I CCWGG 1 cut(s) 667
BcoDI GTCTC 2 cut(s) 290, 885
BfaI CTAG 2 cut(s) 647, 797
BfmI CTRYAG 3 cut(s) 942, 1029, 1092
BfoI RGCGCY 1 cut(s) 240
BfrI CTTAAG 1 cut(s) 592
BisI GCNGC 7 cut(s) 111, 268, 480, 543, 729, 740, 1032
BlsI GCNGC 7 cut(s) 112, 269, 481, 544, 730, 741, 1033
Bme1390I CCNGG 1 cut(s) 667
Bme18I GGWCC 3 cut(s) 708, 815, 977
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 4 cut(s) 463, 708, 815, 977
BmiI GGNNCC 5 cut(s) 709, 769, 926, 978, 1075
BmrFI CCNGG 1 cut(s) 667
BmrI ACTGGG 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 622
BpmI CTGGAG 1 cut(s) 1131
Bpu10I CCTNAGC 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 951
BsaI GGTCTC 2 cut(s) 290, 885
BsaJI CCNNGG 6 cut(s) 466, 683, 711, 818, 928, 1078
Bsc4I CCNNNNNNNGG 1 cut(s) 597
Bse1I ACTGG 3 cut(s) 286, 465, 1222
Bse8I GATNNNNATC 1 cut(s) 951
BseBI CCWGG 1 cut(s) 667
BseDI CCNNGG 6 cut(s) 466, 683, 711, 818, 928, 1078
BseJI GATNNNNATC 1 cut(s) 951
BseLI CCNNNNNNNGG 1 cut(s) 597
BseMII CTCAG 4 cut(s) 179, 207, 576, 852
BseNI ACTGG 3 cut(s) 286, 465, 1222
BseRI GAGGAG 3 cut(s) 98, 618, 835
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 5 cut(s) 122, 554, 715, 726, 1043
BseYI CCCAGC 2 cut(s) 386, 833
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 3 cut(s) 267, 465, 630
BshNI GGYRCC 1 cut(s) 924
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 561, 796
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 2 cut(s) 143, 721
BslI CCNNNNNNNGG 1 cut(s) 597
BsmAI GTCTC 2 cut(s) 290, 885
BsmFI GGGAC 2 cut(s) 143, 721
BsmI GAATGC 4 cut(s) 518, 642, 741, 742
BsnI GGCC 3 cut(s) 267, 465, 630
Bso31I GGTCTC 2 cut(s) 290, 885
BsoBI CYCGRG 1 cut(s) 149
Bsp1286I GDGCHC 3 cut(s) 150, 561, 796
Bsp1407I TGTACA 2 cut(s) 429, 897
Bsp143I GATC 3 cut(s) 105, 551, 767
Bsp19I CCATGG 1 cut(s) 1078
BspACI CCGC 5 cut(s) 113, 231, 259, 268, 479
BspANI GGCC 3 cut(s) 267, 465, 630
BspCNI CTCAG 4 cut(s) 178, 206, 575, 851
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 5 cut(s) 709, 769, 926, 978, 1075
BspMAI CTGCAG 1 cut(s) 1033
BspPI GGATC 4 cut(s) 113, 559, 762, 775
BspT107I GGYRCC 1 cut(s) 924
BspTI CTTAAG 1 cut(s) 592
BspTNI GGTCTC 2 cut(s) 290, 885
BsrBI CCGCTC 2 cut(s) 261, 479
BsrGI TGTACA 2 cut(s) 429, 897
BsrI ACTGG 3 cut(s) 286, 465, 1222
BssECI CCNNGG 6 cut(s) 466, 683, 711, 818, 928, 1078
BssMI GATC 3 cut(s) 105, 551, 767
BssT1I CCWWGG 3 cut(s) 711, 928, 1078
Bst2UI CCWGG 1 cut(s) 667
Bst4CI ACNGT 2 cut(s) 902, 1225
Bst6I CTCTTC 3 cut(s) 95, 254, 501
BstAFI CTTAAG 1 cut(s) 592
BstAUI TGTACA 2 cut(s) 429, 897
BstC8I GCNNGC 3 cut(s) 177, 229, 751
BstDEI CTNAG 4 cut(s) 165, 193, 562, 838
BstDSI CCRYGG 2 cut(s) 683, 1078
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 3 cut(s) 108, 554, 770
BstMAI GTCTC 2 cut(s) 290, 885
BstMBI GATC 3 cut(s) 105, 551, 767
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 3 cut(s) 210, 267, 413
BstNI CCWGG 1 cut(s) 667
BstNSI RCATGY 4 cut(s) 436, 753, 855, 873
BstSCI CCNGG 1 cut(s) 665
BstSFI CTRYAG 3 cut(s) 942, 1029, 1092
BstV1I GCAGC 5 cut(s) 122, 554, 715, 726, 1043
BstV2I GAAGAC 1 cut(s) 622
BstX2I RGATCY 1 cut(s) 767
BstXI CCANNNNNNTGG 1 cut(s) 538
BstYI RGATCY 1 cut(s) 767
BstZI CGGCCG 1 cut(s) 265
BsuRI GGCC 3 cut(s) 267, 465, 630
BtgI CCRYGG 2 cut(s) 683, 1078
BtgZI GCGATG 1 cut(s) 208
BtsI GCAGTG 2 cut(s) 73, 79
BtsIMutI CAGTG 5 cut(s) 73, 79, 173, 570, 1215
Cac8I GCNNGC 3 cut(s) 177, 229, 751
CaiI CAGNNNCTG 1 cut(s) 569
CciI TCATGA 1 cut(s) 313
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 4 cut(s) 463, 708, 815, 977
CseI GACGC 1 cut(s) 862
CsiI ACCWGGT 1 cut(s) 665
Csp6I GTAC 6 cut(s) 430, 663, 898, 939, 1221, 1226
CviQI GTAC 6 cut(s) 430, 663, 898, 939, 1221, 1226
DdeI CTNAG 4 cut(s) 165, 193, 562, 838
DpnI GATC 3 cut(s) 107, 553, 769
DpnII GATC 3 cut(s) 105, 551, 767
DraIII CACNNNGTG 1 cut(s) 565
DrdI GACNNNNNNGTC 1 cut(s) 1122
DseDI GACNNNNNNGTC 1 cut(s) 1122
EaeI YGGCCR 2 cut(s) 265, 628
EagI CGGCCG 1 cut(s) 265
Eam1104I CTCTTC 3 cut(s) 95, 254, 501
EarI CTCTTC 3 cut(s) 95, 254, 501
Ecl136II GAGCTC 1 cut(s) 794
EclXI CGGCCG 1 cut(s) 265
Eco130I CCWWGG 3 cut(s) 711, 928, 1078
Eco24I GRGCYC 2 cut(s) 150, 796
Eco31I GGTCTC 2 cut(s) 290, 885
Eco47I GGWCC 3 cut(s) 708, 815, 977
Eco52I CGGCCG 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 794
Eco57I CTGAAG 1 cut(s) 1062
Eco88I CYCGRG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 794
EcoO109I RGGNCCY 1 cut(s) 977
EcoRII CCWGG 1 cut(s) 665
EcoT14I CCWWGG 3 cut(s) 711, 928, 1078
EcoT22I ATGCAT 1 cut(s) 755
EcoT38I GRGCYC 2 cut(s) 150, 796
ErhI CCWWGG 3 cut(s) 711, 928, 1078
FaqI GGGAC 2 cut(s) 143, 721
FauI CCCGC 1 cut(s) 266
FblI GTMKAC 1 cut(s) 1095
Fnu4HI GCNGC 7 cut(s) 111, 268, 480, 543, 729, 740, 1032
FriOI GRGCYC 2 cut(s) 150, 796
Fsp4HI GCNGC 7 cut(s) 111, 268, 480, 543, 729, 740, 1032
FspBI CTAG 2 cut(s) 647, 797
GlaI GCGC 1 cut(s) 238
GluI GCNGC 7 cut(s) 111, 268, 480, 543, 729, 740, 1032
GsaI CCCAGC 2 cut(s) 390, 837
GsuI CTGGAG 1 cut(s) 1131
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 3 cut(s) 267, 465, 630
HapII CCGG 1 cut(s) 264
HgaI GACGC 1 cut(s) 862
HhaI GCGC 1 cut(s) 239
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HincII GTYRAC 1 cut(s) 1141
HindII GTYRAC 1 cut(s) 1141
HinfI GANTC 5 cut(s) 161, 525, 587, 635, 1206
HpaII CCGG 1 cut(s) 264
HphI GGTGA 2 cut(s) 58, 520
Hpy166II GTNNAC 2 cut(s) 1096, 1141
Hpy188I TCNGA 4 cut(s) 470, 556, 841, 1042
Hpy188III TCNNGA 8 cut(s) 151, 314, 354, 612, 694, 797, 813, 1110
Hpy8I GTNNAC 2 cut(s) 1096, 1141
HpyAV CCTTC 5 cut(s) 48, 88, 413, 698, 1037
HpyCH4III ACNGT 2 cut(s) 902, 1225
HpyCH4V TGCA 6 cut(s) 12, 278, 742, 753, 851, 1031
HpyF10VI GCNNNNNNNGC 3 cut(s) 210, 267, 413
HpyF3I CTNAG 4 cut(s) 165, 193, 562, 838
HspAI GCGC 1 cut(s) 237
Kzo9I GATC 3 cut(s) 105, 551, 767
LmnI GCTCC 3 cut(s) 153, 266, 822
Lsp1109I GCAGC 5 cut(s) 122, 554, 715, 726, 1043
MabI ACCWGGT 1 cut(s) 665
MaeI CTAG 2 cut(s) 647, 797
MaeIII GTNAC 1 cut(s) 1162
MalI GATC 3 cut(s) 107, 553, 769
MbiI CCGCTC 2 cut(s) 261, 479
MboI GATC 3 cut(s) 105, 551, 767
MfeI CAATTG 1 cut(s) 1118
MflI RGATCY 1 cut(s) 767
MhlI GDGCHC 3 cut(s) 150, 561, 796
MlsI TGGCCA 1 cut(s) 630
MluCI AATT 8 cut(s) 31, 357, 369, 378, 425, 651, 1035, 1118
MluNI TGGCCA 1 cut(s) 630
MlyI GAGTC 2 cut(s) 155, 596
MmeI TCCRAC 2 cut(s) 524, 998
Mox20I TGGCCA 1 cut(s) 630
Mph1103I ATGCAT 1 cut(s) 755
MroXI GAANNNNTTC 3 cut(s) 372, 969, 1087
MscI TGGCCA 1 cut(s) 630
MseI TTAA 4 cut(s) 254, 593, 717, 878
MslI CAYNNNNRTG 2 cut(s) 402, 536
Msp20I TGGCCA 1 cut(s) 630
MspA1I CMGCKG 2 cut(s) 113, 386
MspCI CTTAAG 1 cut(s) 592
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 667
MunI CAATTG 1 cut(s) 1118
Mva1269I GAATGC 4 cut(s) 518, 642, 741, 742
MvaI CCWGG 1 cut(s) 667
MwoI GCNNNNNNNGC 3 cut(s) 210, 267, 413
NcoI CCATGG 1 cut(s) 1078
NdeII GATC 3 cut(s) 105, 551, 767
NlaIV GGNNCC 5 cut(s) 709, 769, 926, 978, 1075
NsiI ATGCAT 1 cut(s) 755
NspI RCATGY 4 cut(s) 436, 753, 855, 873
OliI CACNNNNGTG 1 cut(s) 402
PaeI GCATGC 1 cut(s) 753
PagI TCATGA 1 cut(s) 313
PciI ACATGT 1 cut(s) 432
PctI GAATGC 4 cut(s) 518, 642, 741, 742
PdmI GAANNNNTTC 3 cut(s) 372, 969, 1087
PfeI GAWTC 3 cut(s) 525, 635, 1206
PflFI GACNNNGTC 1 cut(s) 621
PkrI GCNGC 7 cut(s) 112, 269, 481, 544, 730, 741, 1033
PleI GAGTC 2 cut(s) 155, 595
PpsI GAGTC 2 cut(s) 155, 595
PpuMI RGGWCCY 1 cut(s) 977
PscI ACATGT 1 cut(s) 432
Psp124BI GAGCTC 1 cut(s) 796
Psp5II RGGWCCY 1 cut(s) 977
Psp6I CCWGG 1 cut(s) 665
PspFI CCCAGC 2 cut(s) 386, 833
PspGI CCWGG 1 cut(s) 665
PspN4I GGNNCC 5 cut(s) 709, 769, 926, 978, 1075
PspPI GGNCC 4 cut(s) 463, 708, 815, 977
PspPPI RGGWCCY 1 cut(s) 977
PstI CTGCAG 1 cut(s) 1033
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 1 cut(s) 767
PsyI GACNNNGTC 1 cut(s) 621
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 6 cut(s) 431, 664, 899, 940, 1222, 1227
RsaNI GTAC 6 cut(s) 430, 663, 898, 939, 1221, 1226
RseI CAYNNNNRTG 2 cut(s) 402, 536
SacI GAGCTC 1 cut(s) 796
SaqAI TTAA 4 cut(s) 254, 593, 717, 878
SatI GCNGC 7 cut(s) 111, 268, 480, 543, 729, 740, 1032
Sau3AI GATC 3 cut(s) 105, 551, 767
Sau96I GGNCC 4 cut(s) 463, 708, 815, 977
SchI GAGTC 2 cut(s) 155, 596
ScrFI CCNGG 1 cut(s) 667
SduI GDGCHC 3 cut(s) 150, 561, 796
SexAI ACCWGGT 1 cut(s) 665
SfcI CTRYAG 3 cut(s) 942, 1029, 1092
SinI GGWCC 3 cut(s) 708, 815, 977
SmiMI CAYNNNNRTG 2 cut(s) 402, 536
SmlI CTYRAG 1 cut(s) 592
SmoI CTYRAG 1 cut(s) 592
SphI GCATGC 1 cut(s) 753
Sse9I AATT 8 cut(s) 31, 357, 369, 378, 425, 651, 1035, 1118
SsiI CCGC 5 cut(s) 113, 231, 259, 268, 479
SspI AATATT 1 cut(s) 1051
SspMI CTAG 2 cut(s) 647, 797
SstI GAGCTC 1 cut(s) 796
StyD4I CCNGG 1 cut(s) 665
StyI CCWWGG 3 cut(s) 711, 928, 1078
TaaI ACNGT 2 cut(s) 902, 1225
TaqII GACCGA 1 cut(s) 832
TasI AATT 8 cut(s) 31, 357, 369, 378, 425, 651, 1035, 1118
TatI WGTACW 3 cut(s) 429, 897, 1225
TauI GCSGC 2 cut(s) 270, 482
TfiI GAWTC 3 cut(s) 525, 635, 1206
Tru1I TTAA 4 cut(s) 254, 593, 717, 878
Tru9I TTAA 4 cut(s) 254, 593, 717, 878
TscAI CASTG 5 cut(s) 73, 79, 173, 570, 1222
TseI GCWGC 5 cut(s) 110, 542, 728, 739, 1031
TspDTI ATGAA 6 cut(s) 302, 548, 766, 774, 801, 930
TspGWI ACGGA 2 cut(s) 760, 1113
TspRI CASTG 5 cut(s) 73, 79, 173, 570, 1222
Tth111I GACNNNGTC 1 cut(s) 621
Vha464I CTTAAG 1 cut(s) 592
VpaK11BI GGWCC 3 cut(s) 708, 815, 977
XapI RAATTY 3 cut(s) 31, 378, 651
XbaI TCTAGA 1 cut(s) 796
XceI RCATGY 4 cut(s) 436, 753, 855, 873
XmiI GTMKAC 1 cut(s) 1095
XmnI GAANNNNTTC 3 cut(s) 372, 969, 1087
XspI CTAG 2 cut(s) 647, 797
Zsp2I ATGCAT 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.