Rw2G024740

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005060
Physical Location & Seq
Reverse (-)
36644224 .. 36653807
9584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G024740.1

Sequence Viewer

Length: 1254 bp
ATGACGATGATGGCGAACTTGAATTCGAAATTAGGGTTGTTCCGATTAGGGACACGGTGGCTGAGCAGTACTGGGAGTGGGCAAGGGAAGAGGGTCGCGGCGGTTTGGGGCAATGGAGACTACGGGAGGCTCGGATTAGGGAGCTTGGACTCTCACTGGAGCCCTACCCCTCTGCTCTGCTCTGCATTTCAGGACCAAAGCCTTGAAGCCGTTGCTTGCGGCGGAGCTCACACTCTGTTCTTGACCCAAGCTGGCCGGGTTTTCGCCACCGGCCTAAATGATTTCGGACAGCTTGGGGCCTCCGCTGATGTGCATTATGCTACTGAGCCGGTGGAGGTATCAGGAATCAACAAGCCAGTTGTGCAAATTTCCGCTGGATATTATCATTCTTGTGCTGTTACAGAAGATGGAGAGTTATACATGTGGGGGAAGAACTCATATGGGCAGCTTGGCCTTGGAAAGAGAGGAGCAAAAACAGTTCCTGCACCAGCAAAAGTTGAATGCTTGGCTGGAATCACCATTAGGATGGTAGCTTTGGGATCAGAGCACTCAGTGGCTGTTACTGATGGAGGTGAGTCCTTAAGTTGGGGAGGAGGTTCTGGAAGACTTGGTCATGGCCCTGAATCAGGCATTTTAGGAATTTTCAAAAGTACCGGTGAATATACACCAAGGCTTATCAAGAAACTTGAGGGGACCAAAGTCAAAAAAGTTGCTGCTGGATTGCTGCATTCAGCATGCGTTGACGAAAATGGATCTGTATTCGTATTTGGTGAAAGAGCAGTAGATAGAATGGGGAGTTTAAAGGGGAAGAATGGAACTGCACCGTCCATGATCAGCAGACTTCCCTGCTCAGAAGAAGTTTCATGCGGTGGCTATCACACATGCGTCATAACAAGTGGTGGAGAACTCTACAGTTGGGGTTCAAATGAAAATGGTTGCCTTGGTATTGGTACTACTGATGTACTTCATCTGCCGGAAAGAGTTCAAGGTCCATTCTTGAAATCTGCAGTTATCAAGGTATCTTGTGGTTGGAAGCATACAGCAGCAATTTCTGAAGGCAATATCTTCACATGGGGTTGGGGAGGTTCACATGGAACATTTTCTGAAGAAGGGCATTCTTCTGGAGGACAACTGGGTCAGGGAACTGATGTTGACTACATAAAACCTATGAGGGTCAAGTTTGGGGAGAATTTGAAAGCTTTACAGATATCATGTGGGTTCAATCACACTGGTGCCATACTAGAATACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1

Protein Analysis

417

Amino Acids

43.72

Weight (kDa)

7.18

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 34 - 410 1.1e-84 RCC1-like domain
RCC1 PF00415 36 - 81 5.1e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 70 - 97 9.5e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 85 - 133 7.5e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 120 - 149 4.6e-15 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 136 - 187 2.3e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 194 - 247 1.6e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 287 - 313 1e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 301 - 350 1.7e-14 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 372 - 413 2.5e-07 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1134
AccB1I GGYRCC 1 cut(s) 1232
AccII CGCG 1 cut(s) 98
AciI CCGC 7 cut(s) 98, 101, 219, 222, 303, 372, 867
AclWI GGATC 2 cut(s) 547, 760
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 4 cut(s) 22, 366, 639, 1189
AcuI CTGAAG 2 cut(s) 1074, 1125
AdeI CACNNNGTG 1 cut(s) 553
AfaI GTAC 4 cut(s) 70, 652, 952, 963
AfiI CCNNNNNNNGG 2 cut(s) 585, 626
AflII CTTAAG 1 cut(s) 580
AflIII ACRYGT 1 cut(s) 420
AgeI ACCGGT 1 cut(s) 653
AgsI TTSAA 9 cut(s) 22, 206, 500, 646, 924, 986, 1000, 1195, 1222
AleI CACNNNNGTG 1 cut(s) 1230
AluBI AGCT 7 cut(s) 144, 227, 251, 292, 448, 533, 1199
AluI AGCT 7 cut(s) 144, 227, 251, 292, 448, 533, 1199
Alw21I GWGCWC 2 cut(s) 229, 549
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 2 cut(s) 547, 760
AlwNI CAGNNNCTG 2 cut(s) 482, 557
AoxI GGCC 5 cut(s) 253, 271, 297, 451, 616
ApeKI GCWGC 4 cut(s) 445, 713, 724, 1043
ApoI RAATTY 4 cut(s) 22, 366, 639, 1189
AsiGI ACCGGT 1 cut(s) 653
Asp700I GAANNNNTTC 2 cut(s) 981, 1099
AspS9I GGNCC 5 cut(s) 193, 297, 617, 693, 989
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 4 cut(s) 508, 584, 668, 782
AsuII TTCGAA 1 cut(s) 26
AvaII GGWCC 3 cut(s) 193, 693, 989
BanI GGYRCC 1 cut(s) 1232
BanII GRGCYC 2 cut(s) 164, 229
BbsI GAAGAC 1 cut(s) 610
Bbv12I GWGCWC 2 cut(s) 229, 549
BbvI GCAGC 4 cut(s) 457, 700, 711, 1055
BccI CCATC 4 cut(s) 4, 401, 520, 560
BceAI ACGGC 1 cut(s) 194
BclI TGATCA 1 cut(s) 831
BcnI CCSGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 1 cut(s) 1241
BfmI CTRYAG 2 cut(s) 910, 1005
BfrI CTTAAG 1 cut(s) 580
BisI GCNGC 6 cut(s) 99, 220, 446, 714, 725, 1044
BlpI GCTNAGC 1 cut(s) 62
BlsI GCNGC 6 cut(s) 100, 221, 447, 715, 726, 1045
BmcAI AGTACT 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 257
Bme18I GGWCC 3 cut(s) 193, 693, 989
BmgT120I GGNCC 5 cut(s) 193, 297, 617, 693, 989
BmiI GGNNCC 4 cut(s) 161, 298, 694, 1234
BmrFI CCNGG 1 cut(s) 257
BmrI ACTGGG 2 cut(s) 81, 1142
BmuI ACTGGG 2 cut(s) 81, 1142
BoxI GACNNNNGTC 1 cut(s) 698
BpiI GAAGAC 1 cut(s) 610
BpmI CTGGAG 2 cut(s) 178, 1143
Bpu1102I GCTNAGC 1 cut(s) 62
Bpu14I TTCGAA 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 707
BpuMI CCSGG 1 cut(s) 257
BsaJI CCNNGG 3 cut(s) 454, 668, 940
BsaWI WCCGGW 1 cut(s) 653
Bsc4I CCNNNNNNNGG 2 cut(s) 585, 626
Bse118I RCCGGY 3 cut(s) 269, 328, 653
Bse1I ACTGG 5 cut(s) 76, 161, 356, 1137, 1234
Bse3DI GCAATG 1 cut(s) 118
BseDI CCNNGG 3 cut(s) 454, 668, 940
BseGI GGATG 1 cut(s) 531
BseLI CCNNNNNNNGG 2 cut(s) 585, 626
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 4 cut(s) 53, 315, 564, 864
BseNI ACTGG 5 cut(s) 76, 161, 356, 1137, 1234
BseRI GAGGAG 2 cut(s) 480, 606
BseXI GCAGC 4 cut(s) 457, 700, 711, 1055
BsgI GTGCAG 2 cut(s) 468, 804
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 5 cut(s) 255, 273, 299, 453, 618
BshNI GGYRCC 1 cut(s) 1232
BshTI ACCGGT 1 cut(s) 653
BsiHKAI GWGCWC 2 cut(s) 229, 549
BsiSI CCGG 5 cut(s) 256, 270, 329, 654, 974
BslFI GGGAC 2 cut(s) 64, 706
BslI CCNNNNNNNGG 2 cut(s) 585, 626
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 2 cut(s) 64, 706
BsmI GAATGC 3 cut(s) 506, 727, 1114
BsnI GGCC 5 cut(s) 255, 273, 299, 453, 618
Bsp119I TTCGAA 1 cut(s) 26
Bsp1286I GDGCHC 3 cut(s) 164, 229, 549
Bsp143I GATC 3 cut(s) 539, 752, 831
Bsp1720I GCTNAGC 1 cut(s) 62
BspACI CCGC 7 cut(s) 98, 101, 219, 222, 303, 372, 867
BspANI GGCC 5 cut(s) 255, 273, 299, 453, 618
BspCNI CTCAG 4 cut(s) 54, 316, 563, 863
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 4 cut(s) 161, 298, 694, 1234
BspMAI CTGCAG 1 cut(s) 1009
BspPI GGATC 2 cut(s) 547, 760
BspT104I TTCGAA 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 1232
BspTI CTTAAG 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 118
BsrFI RCCGGY 3 cut(s) 269, 328, 653
BsrI ACTGG 5 cut(s) 76, 161, 356, 1137, 1234
BssAI RCCGGY 3 cut(s) 269, 328, 653
BssECI CCNNGG 3 cut(s) 454, 668, 940
BssMI GATC 3 cut(s) 539, 752, 831
BssT1I CCWWGG 3 cut(s) 454, 668, 940
Bst4CI ACNGT 4 cut(s) 57, 478, 825, 914
Bst6I CTCTTC 1 cut(s) 83
BstAFI CTTAAG 1 cut(s) 580
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 217, 253, 736
BstDEI CTNAG 4 cut(s) 62, 324, 550, 850
BstENI CCTNNNNNAGG 1 cut(s) 624
BstF5I GGATG 1 cut(s) 531
BstFNI CGCG 1 cut(s) 98
BstKTI GATC 3 cut(s) 542, 755, 834
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 3 cut(s) 539, 752, 831
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNSI RCATGY 3 cut(s) 424, 738, 885
BstPAI GACNNNNGTC 1 cut(s) 698
BstSCI CCNGG 1 cut(s) 255
BstSFI CTRYAG 2 cut(s) 910, 1005
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 4 cut(s) 457, 700, 711, 1055
BstV2I GAAGAC 1 cut(s) 610
BstX2I RGATCY 1 cut(s) 752
BstXI CCANNNNNNTGG 1 cut(s) 526
BstYI RGATCY 1 cut(s) 752
BsuRI GGCC 5 cut(s) 255, 273, 299, 453, 618
BtsCI GGATG 1 cut(s) 531
BtsIMutI CAGTG 3 cut(s) 154, 558, 1227
Cac8I GCNNGC 3 cut(s) 217, 253, 736
CaiI CAGNNNCTG 2 cut(s) 482, 557
Cfr10I RCCGGY 3 cut(s) 269, 328, 653
Cfr13I GGNCC 5 cut(s) 193, 297, 617, 693, 989
CseI GACGC 1 cut(s) 874
Csp6I GTAC 4 cut(s) 69, 651, 951, 962
CspAI ACCGGT 1 cut(s) 653
CviAII CATG 9 cut(s) 421, 614, 735, 829, 864, 882, 1071, 1091, 1212
CviQI GTAC 4 cut(s) 69, 651, 951, 962
DdeI CTNAG 4 cut(s) 62, 324, 550, 850
DpnI GATC 3 cut(s) 541, 754, 833
DpnII GATC 3 cut(s) 539, 752, 831
DraI TTTAAA 1 cut(s) 801
DraIII CACNNNGTG 1 cut(s) 553
DrdI GACNNNNNNGTC 1 cut(s) 1134
DseDI GACNNNNNNGTC 1 cut(s) 1134
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
EciI GGCGGA 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 227
Eco130I CCWWGG 3 cut(s) 454, 668, 940
Eco24I GRGCYC 2 cut(s) 164, 229
Eco32I GATATC 1 cut(s) 1209
Eco47I GGWCC 3 cut(s) 193, 693, 989
Eco53kI GAGCTC 1 cut(s) 227
Eco57I CTGAAG 2 cut(s) 1074, 1125
EcoICRI GAGCTC 1 cut(s) 227
EcoNI CCTNNNNNAGG 1 cut(s) 624
EcoO109I RGGNCCY 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 22
EcoRV GATATC 1 cut(s) 1209
EcoT14I CCWWGG 3 cut(s) 454, 668, 940
EcoT38I GRGCYC 2 cut(s) 164, 229
ErhI CCWWGG 3 cut(s) 454, 668, 940
FaeI CATG 9 cut(s) 424, 617, 738, 832, 867, 885, 1074, 1094, 1215
FaqI GGGAC 2 cut(s) 64, 706
FatI CATG 9 cut(s) 420, 613, 734, 828, 863, 881, 1070, 1090, 1211
FauNDI CATATG 1 cut(s) 439
FbaI TGATCA 1 cut(s) 831
Fnu4HI GCNGC 6 cut(s) 99, 220, 446, 714, 725, 1044
FokI GGATG 1 cut(s) 538
FriOI GRGCYC 2 cut(s) 164, 229
Fsp4HI GCNGC 6 cut(s) 99, 220, 446, 714, 725, 1044
FspBI CTAG 1 cut(s) 1241
GluI GCNGC 6 cut(s) 99, 220, 446, 714, 725, 1044
GsuI CTGGAG 2 cut(s) 178, 1143
HaeIII GGCC 5 cut(s) 255, 273, 299, 453, 618
HapII CCGG 5 cut(s) 256, 270, 329, 654, 974
HgaI GACGC 1 cut(s) 874
Hin1II CATG 9 cut(s) 424, 617, 738, 832, 867, 885, 1074, 1094, 1215
HincII GTYRAC 2 cut(s) 742, 1153
HindII GTYRAC 2 cut(s) 742, 1153
HindIII AAGCTT 1 cut(s) 1197
HinfI GANTC 5 cut(s) 149, 345, 513, 575, 623
HpaII CCGG 5 cut(s) 256, 270, 329, 654, 974
HphI GGTGA 4 cut(s) 508, 584, 668, 782
Hpy166II GTNNAC 3 cut(s) 742, 1088, 1153
Hpy188I TCNGA 7 cut(s) 44, 134, 287, 544, 853, 1054, 1105
Hpy188III TCNNGA 7 cut(s) 191, 241, 342, 600, 679, 997, 1122
Hpy8I GTNNAC 3 cut(s) 742, 1088, 1153
HpyAV CCTTC 2 cut(s) 1049, 1103
HpyCH4III ACNGT 4 cut(s) 57, 478, 825, 914
HpyCH4V TGCA 7 cut(s) 185, 313, 364, 485, 727, 821, 1007
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 4 cut(s) 62, 324, 550, 850
Hsp92II CATG 9 cut(s) 424, 617, 738, 832, 867, 885, 1074, 1094, 1215
Ksp22I TGATCA 1 cut(s) 831
Kzo9I GATC 3 cut(s) 539, 752, 831
LmnI GCTCC 4 cut(s) 141, 159, 224, 467
Lsp1109I GCAGC 4 cut(s) 457, 700, 711, 1055
MaeI CTAG 1 cut(s) 1241
MaeIII GTNAC 2 cut(s) 397, 559
MalI GATC 3 cut(s) 541, 754, 833
MboI GATC 3 cut(s) 539, 752, 831
MboII GAAGA 9 cut(s) 100, 416, 442, 615, 820, 866, 1057, 1110, 1118
MflI RGATCY 1 cut(s) 752
MhlI GDGCHC 3 cut(s) 164, 229, 549
MluCI AATT 6 cut(s) 22, 29, 366, 639, 1047, 1189
MlyI GAGTC 2 cut(s) 143, 584
MmeI TCCRAC 1 cut(s) 1010
MroXI GAANNNNTTC 2 cut(s) 981, 1099
MseI TTAA 2 cut(s) 581, 800
MslI CAYNNNNRTG 3 cut(s) 390, 524, 1230
MspA1I CMGCKG 2 cut(s) 305, 374
MspCI CTTAAG 1 cut(s) 580
MspI CCGG 5 cut(s) 256, 270, 329, 654, 974
MspR9I CCNGG 1 cut(s) 257
Mva1269I GAATGC 3 cut(s) 506, 727, 1114
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 361
NciI CCSGG 1 cut(s) 257
NdeI CATATG 1 cut(s) 439
NdeII GATC 3 cut(s) 539, 752, 831
NlaIII CATG 9 cut(s) 424, 617, 738, 832, 867, 885, 1074, 1094, 1215
NlaIV GGNNCC 4 cut(s) 161, 298, 694, 1234
NspI RCATGY 3 cut(s) 424, 738, 885
NspV TTCGAA 1 cut(s) 26
OliI CACNNNNGTG 1 cut(s) 1230
PaeI GCATGC 1 cut(s) 738
PciI ACATGT 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 3 cut(s) 506, 727, 1114
PdmI GAANNNNTTC 2 cut(s) 981, 1099
PfeI GAWTC 3 cut(s) 345, 513, 623
PflFI GACNNNGTC 1 cut(s) 609
PinAI ACCGGT 1 cut(s) 653
PkrI GCNGC 6 cut(s) 100, 221, 447, 715, 726, 1045
PleI GAGTC 2 cut(s) 143, 583
PpsI GAGTC 2 cut(s) 143, 583
PscI ACATGT 1 cut(s) 420
PshAI GACNNNNGTC 1 cut(s) 698
Psp124BI GAGCTC 1 cut(s) 229
PspN4I GGNNCC 4 cut(s) 161, 298, 694, 1234
PspPI GGNCC 5 cut(s) 193, 297, 617, 693, 989
PstI CTGCAG 1 cut(s) 1009
PstNI CAGNNNCTG 2 cut(s) 482, 557
PsuI RGATCY 1 cut(s) 752
PsyI GACNNNGTC 1 cut(s) 609
RsaI GTAC 4 cut(s) 70, 652, 952, 963
RsaNI GTAC 4 cut(s) 69, 651, 951, 962
RseI CAYNNNNRTG 3 cut(s) 390, 524, 1230
SacI GAGCTC 1 cut(s) 229
SaqAI TTAA 2 cut(s) 581, 800
SatI GCNGC 6 cut(s) 99, 220, 446, 714, 725, 1044
Sau3AI GATC 3 cut(s) 539, 752, 831
Sau96I GGNCC 5 cut(s) 193, 297, 617, 693, 989
ScaI AGTACT 1 cut(s) 70
SchI GAGTC 2 cut(s) 143, 584
ScrFI CCNGG 1 cut(s) 257
SduI GDGCHC 3 cut(s) 164, 229, 549
SfcI CTRYAG 2 cut(s) 910, 1005
SfuI TTCGAA 1 cut(s) 26
SinI GGWCC 3 cut(s) 193, 693, 989
SmiMI CAYNNNNRTG 3 cut(s) 390, 524, 1230
SmlI CTYRAG 2 cut(s) 580, 686
SmoI CTYRAG 2 cut(s) 580, 686
SphI GCATGC 1 cut(s) 738
Sse9I AATT 6 cut(s) 22, 29, 366, 639, 1047, 1189
SsiI CCGC 7 cut(s) 98, 101, 219, 222, 303, 372, 867
SspMI CTAG 1 cut(s) 1241
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 1 cut(s) 255
StyI CCWWGG 3 cut(s) 454, 668, 940
TaaI ACNGT 4 cut(s) 57, 478, 825, 914
TaqI TCGA 1 cut(s) 26
TasI AATT 6 cut(s) 22, 29, 366, 639, 1047, 1189
TatI WGTACW 2 cut(s) 68, 961
TauI GCSGC 2 cut(s) 101, 222
TfiI GAWTC 3 cut(s) 345, 513, 623
Tru1I TTAA 2 cut(s) 581, 800
Tru9I TTAA 2 cut(s) 581, 800
TscAI CASTG 3 cut(s) 161, 558, 1234
TseI GCWGC 4 cut(s) 445, 713, 724, 1043
TspDTI ATGAA 3 cut(s) 852, 942, 956
TspRI CASTG 3 cut(s) 161, 558, 1234
Tth111I GACNNNGTC 1 cut(s) 609
Vha464I CTTAAG 1 cut(s) 580
VpaK11BI GGWCC 3 cut(s) 193, 693, 989
XagI CCTNNNNNAGG 1 cut(s) 624
XapI RAATTY 4 cut(s) 22, 366, 639, 1189
XceI RCATGY 3 cut(s) 424, 738, 885
XmnI GAANNNNTTC 2 cut(s) 981, 1099
XspI CTAG 1 cut(s) 1241
ZrmI AGTACT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.