Rh2AG307200

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0005060
Physical Location & Seq
Reverse (-)
38952764 .. 38962418
9655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG307200.1

Sequence Viewer

Length: 1077 bp
ATGACGATGATGGCGAACTTGAATTCGAAATTAGGGTTGTTCCGATTAGGGACACGGTGGCTGAGCAGTACTGGGAGTGGGCCAGGGAAGAGGGTCGCGGCGGTTTGGGGCAATGGAGACTACGGGAGGCTCGGATTAGGGAGCTTGGACTCTCAGTGGAGCCCTACCCCTCTGCTCTGCTCTGCATTTCAGGACCAAAGCCTTGAAGCCGTTGCTTGCGGCGGAGCTCACACTCTGTTCTTGACCCAAGCTGGCCGGGTTTTCGCCACCGGCCTAAATGATTTCGGACAGCTTGGGGCCTCCACTGATGTGCCTTATGCTACTGAGCCGGTGGAGGTATCGGGAATCAACAAGCCAGTTGTGCAAATTTCCGCTGGATATTATCATTCTTGTGCTGTTACAGAAGATGGAGAGTTATACATGTGGGGGAAGAACTCATATGGGCAGCTTGGCCTTGGAAAGAGAGGAGCAAAAACAGTTCCTGCACCAGCAAAAGTCGAATGCTTGGCTGGAATCACCATTAAGATGGTAGCTTTGGGATCAGAGCACTCAGTGGCTGTTACTGATGGAGGTGAGTCCTTAAGTTGGGGAGGAGGTTCTGGAAGACTTGGTCATGGCCCTGAATCAGGCATTTTAGGAATTTTCAAAAGTACCAGTGAATATACACCAAGGCTTATCAAGAAACTTGAGGGGACCAAAGTCAAAAAAGTTGCTGCTGGATTGCTGCATTCAGCATGCGTTGACGAAAATGGATCTGTATTCGTATTTGGTGAAAGAGCAGTAGATAGAATGGGGAGTTTAAAGGGGAAGAATGGAACTGCACCGTCCATGATCAGCGGACTGCCCTGCTCAGAAGAAGTTTCATGCGGTGGCTATCACACATGCGTCATAACAAGTGGTGGAGAACTCTACAGTTGGGGTTCAAATGAAAATGGTTGCCTTGGTATTGGTACTACTGATGTACTTCATCTGCCGGAAAGAGTTCAAGGTCCATTCTTGAAATCTGCAGTTGTCAAGGTATCTTGTGGTTGGAAGCATACAGCAGCAATTTCTGGTAAGCACCATTTCTATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1

Protein Analysis

358

Amino Acids

37.34

Weight (kDa)

8.27

Isoelectric Point (pI)

29.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 34 - 357 1.1e-75 RCC1-like domain
RCC1 PF00415 36 - 81 2e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 70 - 97 7.8e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 85 - 133 2.5e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 120 - 149 3.8e-15 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 136 - 187 1.5e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 194 - 247 5.3e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 287 - 313 8.5e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 301 - 350 9.5e-15 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 98
AciI CCGC 7 cut(s) 98, 101, 219, 222, 372, 837, 867
AclWI GGATC 2 cut(s) 547, 760
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 3 cut(s) 22, 366, 639
AdeI CACNNNGTG 1 cut(s) 553
AfaI GTAC 4 cut(s) 70, 652, 952, 963
AfiI CCNNNNNNNGG 2 cut(s) 585, 626
AflII CTTAAG 1 cut(s) 580
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 6 cut(s) 22, 206, 646, 924, 986, 1000
AjnI CCWGG 1 cut(s) 82
AleI CACNNNNGTG 1 cut(s) 308
AluBI AGCT 6 cut(s) 144, 227, 251, 292, 448, 533
AluI AGCT 6 cut(s) 144, 227, 251, 292, 448, 533
Alw21I GWGCWC 2 cut(s) 229, 549
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 2 cut(s) 547, 760
AlwNI CAGNNNCTG 2 cut(s) 482, 557
AoxI GGCC 6 cut(s) 80, 253, 271, 297, 451, 616
ApeKI GCWGC 4 cut(s) 445, 713, 724, 1043
ApoI RAATTY 3 cut(s) 22, 366, 639
Asp700I GAANNNNTTC 1 cut(s) 981
AspS9I GGNCC 6 cut(s) 80, 193, 297, 617, 693, 989
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 3 cut(s) 508, 584, 782
AsuII TTCGAA 1 cut(s) 26
AvaII GGWCC 3 cut(s) 193, 693, 989
BanII GRGCYC 2 cut(s) 164, 229
BbsI GAAGAC 1 cut(s) 610
Bbv12I GWGCWC 2 cut(s) 229, 549
BbvI GCAGC 4 cut(s) 457, 700, 711, 1055
BccI CCATC 4 cut(s) 4, 401, 520, 560
BceAI ACGGC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 84
BclI TGATCA 1 cut(s) 831
BcnI CCSGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 111
BfmI CTRYAG 2 cut(s) 910, 1005
BfrI CTTAAG 1 cut(s) 580
BisI GCNGC 6 cut(s) 99, 220, 446, 714, 725, 1044
BlpI GCTNAGC 1 cut(s) 62
BlsI GCNGC 6 cut(s) 100, 221, 447, 715, 726, 1045
BmcAI AGTACT 1 cut(s) 70
Bme1390I CCNGG 2 cut(s) 84, 257
Bme18I GGWCC 3 cut(s) 193, 693, 989
BmgT120I GGNCC 6 cut(s) 80, 193, 297, 617, 693, 989
BmiI GGNNCC 3 cut(s) 161, 298, 694
BmrFI CCNGG 2 cut(s) 84, 257
BmrI ACTGGG 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 81
BoxI GACNNNNGTC 1 cut(s) 698
BpiI GAAGAC 1 cut(s) 610
Bpu1102I GCTNAGC 1 cut(s) 62
Bpu14I TTCGAA 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 707
BpuMI CCSGG 1 cut(s) 257
BsaJI CCNNGG 4 cut(s) 83, 454, 668, 940
Bsc4I CCNNNNNNNGG 2 cut(s) 585, 626
Bse118I RCCGGY 2 cut(s) 269, 328
Bse1I ACTGG 3 cut(s) 76, 356, 654
Bse3DI GCAATG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 4 cut(s) 83, 454, 668, 940
BseLI CCNNNNNNNGG 2 cut(s) 585, 626
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 5 cut(s) 53, 167, 315, 564, 864
BseNI ACTGG 3 cut(s) 76, 356, 654
BseRI GAGGAG 2 cut(s) 480, 606
BseXI GCAGC 4 cut(s) 457, 700, 711, 1055
BsgI GTGCAG 2 cut(s) 468, 804
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 6 cut(s) 82, 255, 273, 299, 453, 618
BsiHKAI GWGCWC 2 cut(s) 229, 549
BsiSI CCGG 4 cut(s) 256, 270, 329, 974
BslFI GGGAC 2 cut(s) 64, 706
BslI CCNNNNNNNGG 2 cut(s) 585, 626
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 2 cut(s) 64, 706
BsmI GAATGC 2 cut(s) 506, 727
BsnI GGCC 6 cut(s) 82, 255, 273, 299, 453, 618
Bsp119I TTCGAA 1 cut(s) 26
Bsp1286I GDGCHC 3 cut(s) 164, 229, 549
Bsp143I GATC 3 cut(s) 539, 752, 831
Bsp1720I GCTNAGC 1 cut(s) 62
BspACI CCGC 7 cut(s) 98, 101, 219, 222, 372, 837, 867
BspANI GGCC 6 cut(s) 82, 255, 273, 299, 453, 618
BspCNI CTCAG 5 cut(s) 54, 166, 316, 563, 863
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 3 cut(s) 161, 298, 694
BspMAI CTGCAG 1 cut(s) 1009
BspPI GGATC 2 cut(s) 547, 760
BspT104I TTCGAA 1 cut(s) 26
BspTI CTTAAG 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 118
BsrFI RCCGGY 2 cut(s) 269, 328
BsrI ACTGG 3 cut(s) 76, 356, 654
BssAI RCCGGY 2 cut(s) 269, 328
BssECI CCNNGG 4 cut(s) 83, 454, 668, 940
BssMI GATC 3 cut(s) 539, 752, 831
BssT1I CCWWGG 3 cut(s) 454, 668, 940
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 4 cut(s) 57, 478, 825, 914
Bst6I CTCTTC 1 cut(s) 83
BstAFI CTTAAG 1 cut(s) 580
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 217, 253, 736
BstDEI CTNAG 5 cut(s) 62, 153, 324, 550, 850
BstENI CCTNNNNNAGG 1 cut(s) 624
BstFNI CGCG 1 cut(s) 98
BstKTI GATC 3 cut(s) 542, 755, 834
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 3 cut(s) 539, 752, 831
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 3 cut(s) 424, 738, 885
BstPAI GACNNNNGTC 1 cut(s) 698
BstSCI CCNGG 2 cut(s) 82, 255
BstSFI CTRYAG 2 cut(s) 910, 1005
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 4 cut(s) 457, 700, 711, 1055
BstV2I GAAGAC 1 cut(s) 610
BstX2I RGATCY 1 cut(s) 752
BstXI CCANNNNNNTGG 1 cut(s) 526
BstYI RGATCY 1 cut(s) 752
BsuRI GGCC 6 cut(s) 82, 255, 273, 299, 453, 618
BtsIMutI CAGTG 4 cut(s) 161, 303, 558, 661
Cac8I GCNNGC 3 cut(s) 217, 253, 736
CaiI CAGNNNCTG 2 cut(s) 482, 557
Cfr10I RCCGGY 2 cut(s) 269, 328
Cfr13I GGNCC 6 cut(s) 80, 193, 297, 617, 693, 989
CseI GACGC 1 cut(s) 874
Csp6I GTAC 4 cut(s) 69, 651, 951, 962
CviAII CATG 6 cut(s) 421, 614, 735, 829, 864, 882
CviQI GTAC 4 cut(s) 69, 651, 951, 962
DdeI CTNAG 5 cut(s) 62, 153, 324, 550, 850
DpnI GATC 3 cut(s) 541, 754, 833
DpnII GATC 3 cut(s) 539, 752, 831
DraI TTTAAA 1 cut(s) 801
DraIII CACNNNGTG 1 cut(s) 553
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
EciI GGCGGA 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 227
Eco130I CCWWGG 3 cut(s) 454, 668, 940
Eco24I GRGCYC 2 cut(s) 164, 229
Eco47I GGWCC 3 cut(s) 193, 693, 989
Eco53kI GAGCTC 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 227
EcoNI CCTNNNNNAGG 1 cut(s) 624
EcoO109I RGGNCCY 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 82
EcoT14I CCWWGG 3 cut(s) 454, 668, 940
EcoT38I GRGCYC 2 cut(s) 164, 229
ErhI CCWWGG 3 cut(s) 454, 668, 940
FaeI CATG 6 cut(s) 424, 617, 738, 832, 867, 885
FaqI GGGAC 2 cut(s) 64, 706
FatI CATG 6 cut(s) 420, 613, 734, 828, 863, 881
FauNDI CATATG 1 cut(s) 439
FbaI TGATCA 1 cut(s) 831
Fnu4HI GCNGC 6 cut(s) 99, 220, 446, 714, 725, 1044
FriOI GRGCYC 2 cut(s) 164, 229
Fsp4HI GCNGC 6 cut(s) 99, 220, 446, 714, 725, 1044
GluI GCNGC 6 cut(s) 99, 220, 446, 714, 725, 1044
HaeIII GGCC 6 cut(s) 82, 255, 273, 299, 453, 618
HapII CCGG 4 cut(s) 256, 270, 329, 974
HgaI GACGC 1 cut(s) 874
Hin1II CATG 6 cut(s) 424, 617, 738, 832, 867, 885
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HinfI GANTC 5 cut(s) 149, 345, 513, 575, 623
HpaII CCGG 4 cut(s) 256, 270, 329, 974
HphI GGTGA 3 cut(s) 508, 584, 782
Hpy166II GTNNAC 1 cut(s) 742
Hpy188I TCNGA 6 cut(s) 44, 134, 287, 544, 853, 1076
Hpy188III TCNNGA 6 cut(s) 191, 241, 342, 600, 679, 997
Hpy8I GTNNAC 1 cut(s) 742
HpyCH4III ACNGT 4 cut(s) 57, 478, 825, 914
HpyCH4V TGCA 6 cut(s) 185, 364, 485, 727, 821, 1007
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 5 cut(s) 62, 153, 324, 550, 850
Hsp92II CATG 6 cut(s) 424, 617, 738, 832, 867, 885
Ksp22I TGATCA 1 cut(s) 831
Kzo9I GATC 3 cut(s) 539, 752, 831
LmnI GCTCC 4 cut(s) 141, 159, 224, 467
Lsp1109I GCAGC 4 cut(s) 457, 700, 711, 1055
MaeIII GTNAC 2 cut(s) 397, 559
MalI GATC 3 cut(s) 541, 754, 833
MboI GATC 3 cut(s) 539, 752, 831
MboII GAAGA 6 cut(s) 100, 416, 442, 615, 820, 866
MflI RGATCY 1 cut(s) 752
MhlI GDGCHC 3 cut(s) 164, 229, 549
MluCI AATT 5 cut(s) 22, 29, 366, 639, 1047
MlyI GAGTC 2 cut(s) 143, 584
MmeI TCCRAC 1 cut(s) 1010
MroXI GAANNNNTTC 1 cut(s) 981
MseI TTAA 3 cut(s) 522, 581, 800
MslI CAYNNNNRTG 3 cut(s) 308, 390, 524
MspA1I CMGCKG 2 cut(s) 374, 837
MspCI CTTAAG 1 cut(s) 580
MspI CCGG 4 cut(s) 256, 270, 329, 974
MspR9I CCNGG 2 cut(s) 84, 257
Mva1269I GAATGC 2 cut(s) 506, 727
MvaI CCWGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 361
NciI CCSGG 1 cut(s) 257
NdeI CATATG 1 cut(s) 439
NdeII GATC 3 cut(s) 539, 752, 831
NlaIII CATG 6 cut(s) 424, 617, 738, 832, 867, 885
NlaIV GGNNCC 3 cut(s) 161, 298, 694
NspI RCATGY 3 cut(s) 424, 738, 885
NspV TTCGAA 1 cut(s) 26
OliI CACNNNNGTG 1 cut(s) 308
PaeI GCATGC 1 cut(s) 738
PciI ACATGT 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 2 cut(s) 506, 727
PdmI GAANNNNTTC 1 cut(s) 981
PfeI GAWTC 3 cut(s) 345, 513, 623
PflFI GACNNNGTC 1 cut(s) 609
PkrI GCNGC 6 cut(s) 100, 221, 447, 715, 726, 1045
PleI GAGTC 2 cut(s) 143, 583
PpsI GAGTC 2 cut(s) 143, 583
PscI ACATGT 1 cut(s) 420
PshAI GACNNNNGTC 1 cut(s) 698
Psp124BI GAGCTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 3 cut(s) 161, 298, 694
PspPI GGNCC 6 cut(s) 80, 193, 297, 617, 693, 989
PstI CTGCAG 1 cut(s) 1009
PstNI CAGNNNCTG 2 cut(s) 482, 557
PsuI RGATCY 1 cut(s) 752
PsyI GACNNNGTC 1 cut(s) 609
RsaI GTAC 4 cut(s) 70, 652, 952, 963
RsaNI GTAC 4 cut(s) 69, 651, 951, 962
RseI CAYNNNNRTG 3 cut(s) 308, 390, 524
SacI GAGCTC 1 cut(s) 229
SaqAI TTAA 3 cut(s) 522, 581, 800
SatI GCNGC 6 cut(s) 99, 220, 446, 714, 725, 1044
Sau3AI GATC 3 cut(s) 539, 752, 831
Sau96I GGNCC 6 cut(s) 80, 193, 297, 617, 693, 989
ScaI AGTACT 1 cut(s) 70
SchI GAGTC 2 cut(s) 143, 584
ScrFI CCNGG 2 cut(s) 84, 257
SduI GDGCHC 3 cut(s) 164, 229, 549
SfcI CTRYAG 2 cut(s) 910, 1005
SfuI TTCGAA 1 cut(s) 26
SinI GGWCC 3 cut(s) 193, 693, 989
SmiMI CAYNNNNRTG 3 cut(s) 308, 390, 524
SmlI CTYRAG 2 cut(s) 580, 686
SmoI CTYRAG 2 cut(s) 580, 686
SphI GCATGC 1 cut(s) 738
Sse9I AATT 5 cut(s) 22, 29, 366, 639, 1047
SsiI CCGC 7 cut(s) 98, 101, 219, 222, 372, 837, 867
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 2 cut(s) 82, 255
StyI CCWWGG 3 cut(s) 454, 668, 940
TaaI ACNGT 4 cut(s) 57, 478, 825, 914
TaqI TCGA 2 cut(s) 26, 498
TasI AATT 5 cut(s) 22, 29, 366, 639, 1047
TatI WGTACW 2 cut(s) 68, 961
TauI GCSGC 2 cut(s) 101, 222
TfiI GAWTC 3 cut(s) 345, 513, 623
Tru1I TTAA 3 cut(s) 522, 581, 800
Tru9I TTAA 3 cut(s) 522, 581, 800
TscAI CASTG 4 cut(s) 161, 310, 558, 661
TseI GCWGC 4 cut(s) 445, 713, 724, 1043
TspDTI ATGAA 3 cut(s) 852, 942, 956
TspRI CASTG 4 cut(s) 161, 310, 558, 661
Tth111I GACNNNGTC 1 cut(s) 609
Vha464I CTTAAG 1 cut(s) 580
VpaK11BI GGWCC 3 cut(s) 193, 693, 989
XagI CCTNNNNNAGG 1 cut(s) 624
XapI RAATTY 3 cut(s) 22, 366, 639
XceI RCATGY 3 cut(s) 424, 738, 885
XmnI GAANNNNTTC 1 cut(s) 981
ZrmI AGTACT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.