Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000452.1

Orthogroup ID

OG0005060

Physical Location & Seq

Genomic Coordinates Forward (+)

13511 .. 15145

Gene Structure 1635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000452.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atgatggcgaacttgaattcgaaattagggttgttccgattagggacacggtggctgagcagtactgggagtgggccagggaagagggtcgcggcggtttggggcaatggagactacgggaggctcggattagggagcttggactctcactggagccctacccctctgctctgctctgcatttcaggaccaaagccttgaagccgttgcttgcggcggagctcacactctgttcttgacccaagctggccgggttttcgccaccggcctaaatgatttcggacagcttggggcctcgactgatgtgccttatgctactgagccggtggaggtatcgggaatcaacaagccagttgtgcaaatttccgctggatattatcattcttgtgctgttacagaagatggagagttatacatgtgggggaagaactcatatgggcagcttggccttggaaagagaggagcaaaaacagttcctgcaccagcaaaagttgaatgcttggctggaatcaccattaggatggtagctttgggatcagagcactcagtggctgttactgatggaggtgagtccttaagttggggaggaggttctggaagacttggtcatggccctgaatcaggcattttaggaattttcaaaagtaccgggtgggttttcttttcctcttattccaatatttcactgtatgaatatacaccatctatctatcttccttttactatgtttgtgaagaagttcccacttcctgcaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

RCC1

Protein Analysis

252

Amino Acids

26.56

Weight (kDa)

7.68

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08710 AT5G08710
fragaria_vesca	FvH4_1g25640 FvH4_1g25640 FvH4_1g25640 FvH4_1g25640 FvH4_1g25640 FvH4_1g25640 FvH4_1g25640 FvH4_1g25640
malus_domestica	MD00G1127500.v1.1
prunus_persica	Prupe.4G282400_v2.0.a1 Prupe.4G282400_v2.0.a1 Prupe.4G282400_v2.0.a1 Prupe.4G282400_v2.0.a1 Prupe.4G282400_v2.0.a1 Prupe.4G282400_v2.0.a1
pyrus_communis	pycom520g00430 pycom520g00440
rosa_chinensis	RchiOBHm_Chr2g0123961
rosa_laevigata	RLG00000018778
rosa_multiflora	Rmu_sc0000452.1_g000003 Rmu_sc0002845.1_g000025
rosa_roxburghii	Rroxscaffold_2G00120200
rosa_rugosa	Rorug02G0248300
rosa_samantha	Rh2AG307200 Rh2BG316200 Rh2CG293900 Rh2DG330800
rosa_wichuraiana	Rw2G024740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	92
AciI	CCGC	5 cut(s)	92, 95, 213, 216, 366
AclWI	GGATC	1 cut(s)	541
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	3 cut(s)	16, 360, 633
AdeI	CACNNNGTG	1 cut(s)	547
AfaI	GTAC	2 cut(s)	64, 646
AfiI	CCNNNNNNNGG	2 cut(s)	579, 620
AflII	CTTAAG	1 cut(s)	574
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	4 cut(s)	16, 200, 494, 640
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	6 cut(s)	138, 221, 245, 286, 442, 527
AluI	AGCT	6 cut(s)	138, 221, 245, 286, 442, 527
Alw21I	GWGCWC	2 cut(s)	223, 543
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	541
AlwNI	CAGNNNCTG	2 cut(s)	476, 551
AoxI	GGCC	6 cut(s)	74, 247, 265, 291, 445, 610
ApeKI	GCWGC	1 cut(s)	439
ApoI	RAATTY	3 cut(s)	16, 360, 633
Asp700I	GAANNNNTTC	1 cut(s)	737
AspS9I	GGNCC	4 cut(s)	74, 187, 291, 611
AsuC2I	CCSGG	2 cut(s)	251, 649
AsuHPI	GGTGA	2 cut(s)	502, 578
AsuII	TTCGAA	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	187
BanII	GRGCYC	2 cut(s)	158, 223
BbsI	GAAGAC	1 cut(s)	604
Bbv12I	GWGCWC	2 cut(s)	223, 543
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	4 cut(s)	395, 514, 554, 709
BceAI	ACGGC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	1 cut(s)	78
BcnI	CCSGG	2 cut(s)	251, 649
BcoDI	GTCTC	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	574
BisI	GCNGC	3 cut(s)	93, 214, 440
BlpI	GCTNAGC	1 cut(s)	56
BlsI	GCNGC	3 cut(s)	94, 215, 441
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	3 cut(s)	78, 251, 649
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	4 cut(s)	74, 187, 291, 611
BmiI	GGNNCC	2 cut(s)	155, 292
BmrFI	CCNGG	3 cut(s)	78, 251, 649
BmrI	ACTGGG	1 cut(s)	75
BmuI	ACTGGG	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	604
BpmI	CTGGAG	1 cut(s)	172
Bpu1102I	GCTNAGC	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	20
BpuMI	CCSGG	2 cut(s)	251, 649
BsaJI	CCNNGG	2 cut(s)	77, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	579, 620
Bse118I	RCCGGY	2 cut(s)	263, 322
Bse1I	ACTGG	3 cut(s)	70, 155, 350
Bse3DI	GCAATG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	77, 448
BseGI	GGATG	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	579, 620
BseMI	GCAATG	1 cut(s)	112
BseMII	CTCAG	3 cut(s)	47, 309, 558
BseNI	ACTGG	3 cut(s)	70, 155, 350
BseRI	GAGGAG	2 cut(s)	474, 600
BseXI	GCAGC	1 cut(s)	451
BsgI	GTGCAG	1 cut(s)	462
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	6 cut(s)	76, 249, 267, 293, 447, 612
BsiHKAI	GWGCWC	2 cut(s)	223, 543
BsiSI	CCGG	4 cut(s)	250, 264, 323, 648
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	2 cut(s)	579, 620
BsmAI	GTCTC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	500
BsnI	GGCC	6 cut(s)	76, 249, 267, 293, 447, 612
Bsp119I	TTCGAA	1 cut(s)	20
Bsp1286I	GDGCHC	3 cut(s)	158, 223, 543
Bsp143I	GATC	1 cut(s)	533
Bsp1720I	GCTNAGC	1 cut(s)	56
BspACI	CCGC	5 cut(s)	92, 95, 213, 216, 366
BspANI	GGCC	6 cut(s)	76, 249, 267, 293, 447, 612
BspCNI	CTCAG	3 cut(s)	48, 310, 557
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	155, 292
BspPI	GGATC	1 cut(s)	541
BspT104I	TTCGAA	1 cut(s)	20
BspTI	CTTAAG	1 cut(s)	574
BsrDI	GCAATG	1 cut(s)	112
BsrFI	RCCGGY	2 cut(s)	263, 322
BsrI	ACTGG	3 cut(s)	70, 155, 350
BssAI	RCCGGY	2 cut(s)	263, 322
BssECI	CCNNGG	2 cut(s)	77, 448
BssMI	GATC	1 cut(s)	533
BssT1I	CCWWGG	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	51, 472, 687
Bst6I	CTCTTC	1 cut(s)	77
BstAFI	CTTAAG	1 cut(s)	574
BstBI	TTCGAA	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	211, 247
BstDEI	CTNAG	3 cut(s)	56, 318, 544
BstENI	CCTNNNNNAGG	1 cut(s)	618
BstF5I	GGATG	1 cut(s)	525
BstFNI	CGCG	1 cut(s)	92
BstKTI	GATC	1 cut(s)	536
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	533
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	3 cut(s)	76, 249, 647
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	451
BstV2I	GAAGAC	1 cut(s)	604
BstXI	CCANNNNNNTGG	1 cut(s)	520
BsuRI	GGCC	6 cut(s)	76, 249, 267, 293, 447, 612
BtsCI	GGATG	1 cut(s)	525
BtsIMutI	CAGTG	3 cut(s)	148, 552, 683
Cac8I	GCNNGC	2 cut(s)	211, 247
CaiI	CAGNNNCTG	2 cut(s)	476, 551
Cfr10I	RCCGGY	2 cut(s)	263, 322
Cfr13I	GGNCC	4 cut(s)	74, 187, 291, 611
Csp6I	GTAC	2 cut(s)	63, 645
CviAII	CATG	2 cut(s)	415, 608
CviQI	GTAC	2 cut(s)	63, 645
DdeI	CTNAG	3 cut(s)	56, 318, 544
DpnI	GATC	1 cut(s)	535
DpnII	GATC	1 cut(s)	533
DraIII	CACNNNGTG	1 cut(s)	547
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	231
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	448
Eco24I	GRGCYC	2 cut(s)	158, 223
Eco47I	GGWCC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	221
EcoNI	CCTNNNNNAGG	1 cut(s)	618
EcoO109I	RGGNCCY	1 cut(s)	291
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	448
EcoT38I	GRGCYC	2 cut(s)	158, 223
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	2 cut(s)	418, 611
FaiI	YATR	9 cut(s)	312, 412, 416, 433, 435, 609, 690, 696, 725
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	414, 607
FauNDI	CATATG	1 cut(s)	433
Fnu4HI	GCNGC	3 cut(s)	93, 214, 440
FokI	GGATG	1 cut(s)	532
FriOI	GRGCYC	2 cut(s)	158, 223
Fsp4HI	GCNGC	3 cut(s)	93, 214, 440
GluI	GCNGC	3 cut(s)	93, 214, 440
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	6 cut(s)	76, 249, 267, 293, 447, 612
HapII	CCGG	4 cut(s)	250, 264, 323, 648
Hin1II	CATG	2 cut(s)	418, 611
HinfI	GANTC	5 cut(s)	143, 339, 507, 569, 617
HpaII	CCGG	4 cut(s)	250, 264, 323, 648
HphI	GGTGA	2 cut(s)	502, 578
Hpy188I	TCNGA	5 cut(s)	38, 128, 281, 538, 758
Hpy188III	TCNNGA	4 cut(s)	185, 235, 336, 594
HpyCH4III	ACNGT	3 cut(s)	51, 472, 687
HpyCH4V	TGCA	4 cut(s)	179, 358, 479, 752
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	3 cut(s)	56, 318, 544
Hsp92II	CATG	2 cut(s)	418, 611
Kzo9I	GATC	1 cut(s)	533
LmnI	GCTCC	4 cut(s)	135, 153, 218, 461
Lsp1109I	GCAGC	1 cut(s)	451
MaeIII	GTNAC	2 cut(s)	391, 553
MalI	GATC	1 cut(s)	535
MboI	GATC	1 cut(s)	533
MboII	GAAGA	6 cut(s)	94, 410, 436, 609, 704, 745
MhlI	GDGCHC	3 cut(s)	158, 223, 543
MluCI	AATT	4 cut(s)	16, 23, 360, 633
MlyI	GAGTC	2 cut(s)	137, 578
MroXI	GAANNNNTTC	1 cut(s)	737
MseI	TTAA	1 cut(s)	575
MslI	CAYNNNNRTG	2 cut(s)	384, 518
MspA1I	CMGCKG	1 cut(s)	368
MspCI	CTTAAG	1 cut(s)	574
MspI	CCGG	4 cut(s)	250, 264, 323, 648
MspR9I	CCNGG	3 cut(s)	78, 251, 649
Mva1269I	GAATGC	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	355
NciI	CCSGG	2 cut(s)	251, 649
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	1 cut(s)	533
NlaIII	CATG	2 cut(s)	418, 611
NlaIV	GGNNCC	2 cut(s)	155, 292
NspI	RCATGY	1 cut(s)	418
NspV	TTCGAA	1 cut(s)	20
PciI	ACATGT	1 cut(s)	414
PctI	GAATGC	1 cut(s)	500
PdmI	GAANNNNTTC	1 cut(s)	737
PfeI	GAWTC	3 cut(s)	339, 507, 617
PflFI	GACNNNGTC	1 cut(s)	603
PkrI	GCNGC	3 cut(s)	94, 215, 441
PleI	GAGTC	2 cut(s)	137, 577
PpsI	GAGTC	2 cut(s)	137, 577
PscI	ACATGT	1 cut(s)	414
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	155, 292
PspPI	GGNCC	4 cut(s)	74, 187, 291, 611
PstNI	CAGNNNCTG	2 cut(s)	476, 551
PsyI	GACNNNGTC	1 cut(s)	603
RsaI	GTAC	2 cut(s)	64, 646
RsaNI	GTAC	2 cut(s)	63, 645
RseI	CAYNNNNRTG	2 cut(s)	384, 518
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	3 cut(s)	93, 214, 440
Sau3AI	GATC	1 cut(s)	533
Sau96I	GGNCC	4 cut(s)	74, 187, 291, 611
ScaI	AGTACT	1 cut(s)	64
SchI	GAGTC	2 cut(s)	137, 578
ScrFI	CCNGG	3 cut(s)	78, 251, 649
SduI	GDGCHC	3 cut(s)	158, 223, 543
SetI	ASST	9 cut(s)	140, 223, 247, 288, 333, 444, 529, 568, 592
SfuI	TTCGAA	1 cut(s)	20
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	2 cut(s)	384, 518
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
Sse9I	AATT	4 cut(s)	16, 23, 360, 633
SsiI	CCGC	5 cut(s)	92, 95, 213, 216, 366
SspI	AATATT	1 cut(s)	679
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	3 cut(s)	76, 249, 647
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	3 cut(s)	51, 472, 687
TaqI	TCGA	2 cut(s)	20, 296
TasI	AATT	4 cut(s)	16, 23, 360, 633
TatI	WGTACW	1 cut(s)	62
TauI	GCSGC	2 cut(s)	95, 216
TfiI	GAWTC	3 cut(s)	339, 507, 617
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	3 cut(s)	155, 552, 690
TseI	GCWGC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	705
TspRI	CASTG	3 cut(s)	155, 552, 690
Tth111I	GACNNNGTC	1 cut(s)	603
Vha464I	CTTAAG	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	187
XagI	CCTNNNNNAGG	1 cut(s)	618
XapI	RAATTY	3 cut(s)	16, 360, 633
XceI	RCATGY	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	737
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.