Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_520

Orthogroup ID

OG0005060

Physical Location & Seq

Genomic Coordinates Forward (+)

355803 .. 357840

Gene Structure 2038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom520g00430.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTGGAGGACGATGAGAATGAAATTGGGTGGTACAGGCGGCGGAAGAAGATGGTTGAGCAGTCGGAGTGATTGGGGGAAGGGGAAGAGGATCGCGGCGGTGTGGGGGAACGGGGACTACGGGAGGCTTGGGCTCGGTAGCCTGGACTCTCAGTGGAAGCCTGCCCCTTTGCGTTCGTCTGCCTTTGGCGACCAATCCCCTGAAGCCATAGCTTGCGGCGGCGCTCACACTCTCTTCTTAACGGGCAGCGGCCGCCTTTACGCCACCGGTCTCAATGATTTTGGACAGCTTGGAGTTGGGGATTCTCATGATTTAACTTACACTTGTAAGCCCTTAGAGGTAACTGGAATTGGCAAGGAAATTGTTCGAATTTCGGCCGGTTACTATCACTCTTGTGCTATTACAGAAGATGGAGAATTGTACATGTGGGGGAAGAACTCAAATGGGCAGCTTGGTCTTGGAAAAAGGGCTGCAGGGCTAGTTTCTGTACCAACCAAAGTTGAATGCTTGGCTGGAATCACCATTAAGACAGCAGCTTTGGGATCAGAGCACTCAGTAGCTGTTACTGATGGAGGTGAGTCCTTAAGTTGGGGAGGAGGGTCTGGGAGACTTGGTCATGGCCACGAATCAGGAATTTTAGGAATTCTCAGAAGTACCAGGTGGTATTTGATTTCTTTTATTACACGATTAAATAGAAATTTTTTTTCCCTTTGCTATGTTTCAACTGTGAAGTTCCCACTGCCTACAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

RCC1

Protein Analysis

251

Amino Acids

26.65

Weight (kDa)

9.46

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08710 AT5G08710
fragaria_vesca	FvH4_1g25640 FvH4_1g25640 FvH4_1g25640 FvH4_1g25640 FvH4_1g25640 FvH4_1g25640 FvH4_1g25640 FvH4_1g25640
malus_domestica	MD00G1127500.v1.1
prunus_persica	Prupe.4G282400_v2.0.a1 Prupe.4G282400_v2.0.a1 Prupe.4G282400_v2.0.a1 Prupe.4G282400_v2.0.a1 Prupe.4G282400_v2.0.a1 Prupe.4G282400_v2.0.a1
pyrus_communis	pycom520g00430 pycom520g00440
rosa_chinensis	RchiOBHm_Chr2g0123961
rosa_laevigata	RLG00000018778
rosa_multiflora	Rmu_sc0000452.1_g000003 Rmu_sc0002845.1_g000025
rosa_roxburghii	Rroxscaffold_2G00120200
rosa_rugosa	Rorug02G0248300
rosa_samantha	Rh2AG307200 Rh2BG316200 Rh2CG293900 Rh2DG330800
rosa_wichuraiana	Rw2G024740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	95
AciI	CCGC	8 cut(s)	39, 42, 95, 98, 216, 219, 249, 253
AclWI	GGATC	2 cut(s)	98, 550
AcoI	YGGCCR	3 cut(s)	250, 375, 619
AcsI	RAATTY	4 cut(s)	369, 633, 642, 697
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	4 cut(s)	34, 422, 489, 655
AfiI	CCNNNNNNNGG	1 cut(s)	588
AflII	CTTAAG	1 cut(s)	583
AflIII	ACRYGT	1 cut(s)	423
AgeI	ACCGGT	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	503, 723
AjnI	CCWGG	2 cut(s)	141, 656
AleI	CACNNNNGTG	1 cut(s)	393
AluBI	AGCT	5 cut(s)	212, 289, 451, 536, 560
AluI	AGCT	5 cut(s)	212, 289, 451, 536, 560
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	2 cut(s)	275, 601
AlwI	GGATC	2 cut(s)	98, 550
AlwNI	CAGNNNCTG	1 cut(s)	560
AoxI	GGCC	3 cut(s)	250, 375, 619
ApeKI	GCWGC	4 cut(s)	246, 448, 470, 533
ApoI	RAATTY	4 cut(s)	369, 633, 642, 697
ArsI	GACNNNNNNTTYG	2 cut(s)	520, 552
AsiGI	ACCGGT	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	511, 587
AsuII	TTCGAA	1 cut(s)	367
BalI	TGGCCA	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	4 cut(s)	258, 457, 460, 545
BccI	CCATC	3 cut(s)	45, 404, 563
BciT130I	CCWGG	2 cut(s)	143, 658
BcoDI	GTCTC	2 cut(s)	275, 601
BfaI	CTAG	1 cut(s)	479
BfmI	CTRYAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	225
BfrI	CTTAAG	1 cut(s)	583
Bme1390I	CCNGG	2 cut(s)	143, 658
BmrFI	CCNGG	2 cut(s)	143, 658
Bpu14I	TTCGAA	1 cut(s)	367
BsaI	GGTCTC	1 cut(s)	275
BsaWI	WCCGGW	1 cut(s)	266
BsaXI	ACNNNNNCTCC	2 cut(s)	598, 628
Bsc4I	CCNNNNNNNGG	1 cut(s)	588
Bse118I	RCCGGY	2 cut(s)	266, 377
Bse1I	ACTGG	1 cut(s)	349
BseBI	CCWGG	2 cut(s)	143, 658
BseLI	CCNNNNNNNGG	1 cut(s)	588
BseMII	CTCAG	3 cut(s)	164, 567, 661
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	609
BseX3I	CGGCCG	2 cut(s)	250, 375
BseXI	GCAGC	4 cut(s)	258, 457, 460, 545
Bsh1236I	CGCG	1 cut(s)	95
Bsh1285I	CGRYCG	2 cut(s)	253, 378
BshFI	GGCC	3 cut(s)	252, 377, 621
BshTI	ACCGGT	1 cut(s)	266
BsiEI	CGRYCG	2 cut(s)	253, 378
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	2 cut(s)	267, 378
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	588
BsmAI	GTCTC	2 cut(s)	275, 601
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	3 cut(s)	252, 377, 621
Bso31I	GGTCTC	1 cut(s)	275
Bsp119I	TTCGAA	1 cut(s)	367
Bsp1286I	GDGCHC	2 cut(s)	135, 552
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	90, 542
BspACI	CCGC	8 cut(s)	39, 42, 95, 98, 216, 219, 249, 253
BspANI	GGCC	3 cut(s)	252, 377, 621
BspCNI	CTCAG	3 cut(s)	163, 566, 660
BspFNI	CGCG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	307
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	2 cut(s)	98, 550
BspT104I	TTCGAA	1 cut(s)	367
BspTI	CTTAAG	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	275
BsrFI	RCCGGY	2 cut(s)	266, 377
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	349
BssAI	RCCGGY	2 cut(s)	266, 377
BssMI	GATC	2 cut(s)	90, 542
Bst2UI	CCWGG	2 cut(s)	143, 658
Bst4CI	ACNGT	1 cut(s)	727
Bst6I	CTCTTC	2 cut(s)	80, 239
BstAFI	CTTAAG	1 cut(s)	583
BstAUI	TGTACA	1 cut(s)	420
BstBI	TTCGAA	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	162, 214
BstDEI	CTNAG	4 cut(s)	150, 334, 553, 647
BstFNI	CGCG	1 cut(s)	95
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	2 cut(s)	93, 545
BstMAI	GTCTC	2 cut(s)	275, 601
BstMBI	GATC	2 cut(s)	90, 542
BstMCI	CGRYCG	2 cut(s)	253, 378
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNI	CCWGG	2 cut(s)	143, 658
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	2 cut(s)	141, 656
BstSFI	CTRYAG	1 cut(s)	471
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	4 cut(s)	258, 457, 460, 545
BstZI	CGGCCG	2 cut(s)	250, 375
BsuRI	GGCC	3 cut(s)	252, 377, 621
BtsI	GCAGTG	1 cut(s)	737
BtsIMutI	CAGTG	2 cut(s)	158, 737
Cac8I	GCNNGC	2 cut(s)	162, 214
CaiI	CAGNNNCTG	1 cut(s)	560
CciI	TCATGA	1 cut(s)	307
CciNI	GCGGCCGC	1 cut(s)	250
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	2 cut(s)	266, 377
CsiI	ACCWGGT	1 cut(s)	656
Csp6I	GTAC	4 cut(s)	33, 421, 488, 654
CspAI	ACCGGT	1 cut(s)	266
CviAII	CATG	3 cut(s)	308, 424, 617
CviQI	GTAC	4 cut(s)	33, 421, 488, 654
DdeI	CTNAG	4 cut(s)	150, 334, 553, 647
DpnI	GATC	2 cut(s)	92, 544
DpnII	GATC	2 cut(s)	90, 542
EaeI	YGGCCR	3 cut(s)	250, 375, 619
EagI	CGGCCG	2 cut(s)	250, 375
Eam1104I	CTCTTC	2 cut(s)	80, 239
EarI	CTCTTC	2 cut(s)	80, 239
EciI	GGCGGA	1 cut(s)	57
EclXI	CGGCCG	2 cut(s)	250, 375
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	275
Eco52I	CGGCCG	2 cut(s)	250, 375
Eco57I	CTGAAG	1 cut(s)	222
EcoRI	GAATTC	1 cut(s)	642
EcoRII	CCWGG	2 cut(s)	141, 656
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	3 cut(s)	311, 427, 620
FaiI	YATR	5 cut(s)	209, 309, 425, 618, 717
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	307, 423, 616
FriOI	GRGCYC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	1 cut(s)	223
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	252, 377, 621
HapII	CCGG	2 cut(s)	267, 378
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	311, 427, 620
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HinfI	GANTC	5 cut(s)	146, 302, 516, 578, 626
HpaII	CCGG	2 cut(s)	267, 378
HphI	GGTGA	2 cut(s)	511, 587
Hpy188I	TCNGA	4 cut(s)	66, 547, 650, 752
Hpy188III	TCNNGA	2 cut(s)	308, 630
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	727
HpyCH4V	TGCA	1 cut(s)	473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	4 cut(s)	150, 334, 553, 647
Hsp92II	CATG	3 cut(s)	311, 427, 620
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	2 cut(s)	90, 542
Lsp1109I	GCAGC	4 cut(s)	258, 457, 460, 545
MabI	ACCWGGT	1 cut(s)	656
MaeI	CTAG	1 cut(s)	479
MaeIII	GTNAC	3 cut(s)	340, 380, 562
MalI	GATC	2 cut(s)	92, 544
MboI	GATC	2 cut(s)	90, 542
MboII	GAAGA	6 cut(s)	57, 60, 97, 226, 419, 445
MhlI	GDGCHC	2 cut(s)	135, 552
MlsI	TGGCCA	1 cut(s)	621
MluCI	AATT	8 cut(s)	23, 348, 360, 369, 416, 633, 642, 697
MluNI	TGGCCA	1 cut(s)	621
MlyI	GAGTC	2 cut(s)	140, 587
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	6 cut(s)	81, 117, 331, 566, 587, 590
Mox20I	TGGCCA	1 cut(s)	621
MroXI	GAANNNNTTC	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	621
MseI	TTAA	5 cut(s)	239, 314, 525, 584, 689
MslI	CAYNNNNRTG	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	249
MspCI	CTTAAG	1 cut(s)	583
MspI	CCGG	2 cut(s)	267, 378
MspR9I	CCNGG	2 cut(s)	143, 658
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	2 cut(s)	143, 658
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	252
NdeII	GATC	2 cut(s)	90, 542
NlaIII	CATG	3 cut(s)	311, 427, 620
NotI	GCGGCCGC	1 cut(s)	250
NspI	RCATGY	1 cut(s)	427
NspV	TTCGAA	1 cut(s)	367
OliI	CACNNNNGTG	1 cut(s)	393
PagI	TCATGA	1 cut(s)	307
PciI	ACATGT	1 cut(s)	423
PctI	GAATGC	1 cut(s)	509
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	3 cut(s)	302, 516, 626
PflFI	GACNNNGTC	1 cut(s)	612
PinAI	ACCGGT	1 cut(s)	266
PleI	GAGTC	2 cut(s)	140, 586
PpsI	GAGTC	2 cut(s)	140, 586
PscI	ACATGT	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	141, 656
PspGI	CCWGG	2 cut(s)	141, 656
PsrI	GAACNNNNNNTAC	2 cut(s)	101, 133
PstI	CTGCAG	1 cut(s)	475
PstNI	CAGNNNCTG	1 cut(s)	560
PsyI	GACNNNGTC	1 cut(s)	612
RsaI	GTAC	4 cut(s)	34, 422, 489, 655
RsaNI	GTAC	4 cut(s)	33, 421, 488, 654
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	5 cut(s)	239, 314, 525, 584, 689
Sau3AI	GATC	2 cut(s)	90, 542
SchI	GAGTC	2 cut(s)	140, 587
ScrFI	CCNGG	2 cut(s)	143, 658
SduI	GDGCHC	2 cut(s)	135, 552
SetI	ASST	8 cut(s)	214, 291, 342, 453, 538, 562, 577, 662
SexAI	ACCWGGT	1 cut(s)	656
SfcI	CTRYAG	1 cut(s)	471
SfuI	TTCGAA	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
Sse9I	AATT	8 cut(s)	23, 348, 360, 369, 416, 633, 642, 697
SsiI	CCGC	8 cut(s)	39, 42, 95, 98, 216, 219, 249, 253
SspMI	CTAG	1 cut(s)	479
StyD4I	CCNGG	2 cut(s)	141, 656
TaaI	ACNGT	1 cut(s)	727
TaqI	TCGA	1 cut(s)	367
TasI	AATT	8 cut(s)	23, 348, 360, 369, 416, 633, 642, 697
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	6 cut(s)	42, 98, 219, 222, 252, 255
TfiI	GAWTC	3 cut(s)	302, 516, 626
Tru1I	TTAA	5 cut(s)	239, 314, 525, 584, 689
Tru9I	TTAA	5 cut(s)	239, 314, 525, 584, 689
TscAI	CASTG	2 cut(s)	158, 744
TseI	GCWGC	4 cut(s)	246, 448, 470, 533
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	2 cut(s)	158, 744
Tth111I	GACNNNGTC	1 cut(s)	612
Vha464I	CTTAAG	1 cut(s)	583
XapI	RAATTY	4 cut(s)	369, 633, 642, 697
XceI	RCATGY	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.