Rh2DG330800

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0005060
Physical Location & Seq
Reverse (-)
42213242 .. 42222292
9051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG330800.1

Sequence Viewer

Length: 1092 bp
ATGACGATGATGGCGAACTTGAATTCGAAATTAGGGTTGTTCCGATTAGGGACACGGTGGCTGAGCAGTACTGGGAGTGGGCCAGGGAAGAGGGTCGCGGCGGTTTGGGGCAATGGAGACTACGGGAGGCTCGGATTAGGGAGCTTGGACTCTCAGTGGAGCCCTACCCCTCTGCTCTGCTCTGCATTTCAGGACCAAAGCCTTGAAGCCGTTGCTTGCGGCGGAGCTCACACTCTGTTCTTGACCCAAGCTGGCCGGGTTTTCGCCACCGGCCTAAATGATTTCGGACAGCTTGGGGCCTCCACTGATGTGCCTTATGCTACTGAGCCGGTGGAGGTATCGGGAATCAACAAGCCAGTTGTGCAAATTTCCGCTGGATATTATCATTCTTGTGCTGTTACAGATGGAGGTGAGTCCTTAAGTTGGGGAGGAGGTTCTGGAAGACTTGGTCATGGCCCTGAATCAGGCATTTTAGGAATTTTCAAAAGTACCAGTGAATATACACCAAGGCTTATCAAGAAACTTGAGGGGACCAAAGTCAAAAAAGTTGCTGCTGGATTGCTGCATTCAGCATGCGTTGACGAAAATGGATCTGTATTCGTATTTGGTGAAAGAGCAGTAGATAGAATGGGGAGTTTAAAGGGGAAGAATGGAACTGCACCGTCCATGATCAGCGGACTGCCCTGCTCAGAAGAAGTTTCATGCGGTGGCTATCACACATGCGTCATAACAAGTGGTGGAGAACTCTACAGTTGGGGTTCAAATGAAAATGGTTGCCTTGGTATTGGTACTACTGATGTACTTCATCTGCCGGAAAGAGTTCAAGGTCCATTCTTGAAATCTGCAGTTGTCAAGGTATCTTGTGGTTGGAAGCATACAGCAGCAATTTCTGAAGGCAATATCTTCACATGGGGTTGGGGAGGTTCACATGGAACATTTTCTGAAGAAGGGCATTCTTCTGGAGGACAACTGGGTCAGGGAACTGATGTTGACTACATAAAACCTATGAGGGTCAAGTTTGGGGAGAATTTGAAAGCTTTACAGATATCATGTGGGTTCAATCACACTGGTGCCATACTAGAATACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1

Protein Analysis

363

Amino Acids

37.94

Weight (kDa)

6.55

Isoelectric Point (pI)

26.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 34 - 359 2e-66 RCC1-like domain
RCC1 PF00415 36 - 81 2.1e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 70 - 97 8e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 85 - 133 2.6e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 120 - 145 1.3e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 140 - 193 5.4e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 233 - 259 8.6e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 247 - 296 9.6e-15 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 318 - 359 2.1e-07 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 972
AccB1I GGYRCC 1 cut(s) 1070
AccII CGCG 1 cut(s) 98
AciI CCGC 7 cut(s) 98, 101, 219, 222, 372, 675, 705
AclWI GGATC 1 cut(s) 598
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 4 cut(s) 22, 366, 477, 1027
AcuI CTGAAG 2 cut(s) 912, 963
AfaI GTAC 4 cut(s) 70, 490, 790, 801
AfiI CCNNNNNNNGG 2 cut(s) 423, 464
AflII CTTAAG 1 cut(s) 418
AgsI TTSAA 8 cut(s) 22, 206, 484, 762, 824, 838, 1033, 1060
AjnI CCWGG 1 cut(s) 82
AleI CACNNNNGTG 2 cut(s) 308, 1068
AluBI AGCT 5 cut(s) 144, 227, 251, 292, 1037
AluI AGCT 5 cut(s) 144, 227, 251, 292, 1037
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 1 cut(s) 598
AoxI GGCC 5 cut(s) 80, 253, 271, 297, 454
ApeKI GCWGC 3 cut(s) 551, 562, 881
ApoI RAATTY 4 cut(s) 22, 366, 477, 1027
Asp700I GAANNNNTTC 2 cut(s) 819, 937
AspS9I GGNCC 6 cut(s) 80, 193, 297, 455, 531, 827
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 422, 620
AsuII TTCGAA 1 cut(s) 26
AvaII GGWCC 3 cut(s) 193, 531, 827
BanI GGYRCC 1 cut(s) 1070
BanII GRGCYC 2 cut(s) 164, 229
BbsI GAAGAC 1 cut(s) 448
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 3 cut(s) 538, 549, 893
BccI CCATC 2 cut(s) 4, 398
BceAI ACGGC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 84
BclI TGATCA 1 cut(s) 669
BcnI CCSGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 1 cut(s) 1079
BfmI CTRYAG 2 cut(s) 748, 843
BfrI CTTAAG 1 cut(s) 418
BisI GCNGC 5 cut(s) 99, 220, 552, 563, 882
BlpI GCTNAGC 1 cut(s) 62
BlsI GCNGC 5 cut(s) 100, 221, 553, 564, 883
BmcAI AGTACT 1 cut(s) 70
Bme1390I CCNGG 2 cut(s) 84, 257
Bme18I GGWCC 3 cut(s) 193, 531, 827
BmgT120I GGNCC 6 cut(s) 80, 193, 297, 455, 531, 827
BmiI GGNNCC 4 cut(s) 161, 298, 532, 1072
BmrFI CCNGG 2 cut(s) 84, 257
BmrI ACTGGG 2 cut(s) 81, 980
BmuI ACTGGG 2 cut(s) 81, 980
BoxI GACNNNNGTC 1 cut(s) 536
BpiI GAAGAC 1 cut(s) 448
BpmI CTGGAG 1 cut(s) 981
Bpu1102I GCTNAGC 1 cut(s) 62
Bpu14I TTCGAA 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 545
BpuMI CCSGG 1 cut(s) 257
BsaJI CCNNGG 3 cut(s) 83, 506, 778
Bsc4I CCNNNNNNNGG 2 cut(s) 423, 464
Bse118I RCCGGY 2 cut(s) 269, 328
Bse1I ACTGG 5 cut(s) 76, 356, 492, 975, 1072
Bse3DI GCAATG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 3 cut(s) 83, 506, 778
BseLI CCNNNNNNNGG 2 cut(s) 423, 464
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 4 cut(s) 53, 167, 315, 702
BseNI ACTGG 5 cut(s) 76, 356, 492, 975, 1072
BseRI GAGGAG 1 cut(s) 444
BseXI GCAGC 3 cut(s) 538, 549, 893
BsgI GTGCAG 1 cut(s) 642
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 5 cut(s) 82, 255, 273, 299, 456
BshNI GGYRCC 1 cut(s) 1070
BsiHKAI GWGCWC 1 cut(s) 229
BsiSI CCGG 4 cut(s) 256, 270, 329, 812
BslFI GGGAC 2 cut(s) 64, 544
BslI CCNNNNNNNGG 2 cut(s) 423, 464
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 2 cut(s) 64, 544
BsmI GAATGC 2 cut(s) 565, 952
BsnI GGCC 5 cut(s) 82, 255, 273, 299, 456
Bsp119I TTCGAA 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 164, 229
Bsp143I GATC 2 cut(s) 590, 669
Bsp1720I GCTNAGC 1 cut(s) 62
BspACI CCGC 7 cut(s) 98, 101, 219, 222, 372, 675, 705
BspANI GGCC 5 cut(s) 82, 255, 273, 299, 456
BspCNI CTCAG 4 cut(s) 54, 166, 316, 701
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 4 cut(s) 161, 298, 532, 1072
BspMAI CTGCAG 1 cut(s) 847
BspPI GGATC 1 cut(s) 598
BspT104I TTCGAA 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 1070
BspTI CTTAAG 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 118
BsrFI RCCGGY 2 cut(s) 269, 328
BsrI ACTGG 5 cut(s) 76, 356, 492, 975, 1072
BssAI RCCGGY 2 cut(s) 269, 328
BssECI CCNNGG 3 cut(s) 83, 506, 778
BssMI GATC 2 cut(s) 590, 669
BssT1I CCWWGG 2 cut(s) 506, 778
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 3 cut(s) 57, 663, 752
Bst6I CTCTTC 1 cut(s) 83
BstAFI CTTAAG 1 cut(s) 418
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 217, 253, 574
BstDEI CTNAG 4 cut(s) 62, 153, 324, 688
BstENI CCTNNNNNAGG 1 cut(s) 462
BstFNI CGCG 1 cut(s) 98
BstKTI GATC 2 cut(s) 593, 672
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 2 cut(s) 590, 669
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 2 cut(s) 576, 723
BstPAI GACNNNNGTC 1 cut(s) 536
BstSCI CCNGG 2 cut(s) 82, 255
BstSFI CTRYAG 2 cut(s) 748, 843
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 3 cut(s) 538, 549, 893
BstV2I GAAGAC 1 cut(s) 448
BstX2I RGATCY 1 cut(s) 590
BstYI RGATCY 1 cut(s) 590
BsuRI GGCC 5 cut(s) 82, 255, 273, 299, 456
BtsIMutI CAGTG 4 cut(s) 161, 303, 499, 1065
Cac8I GCNNGC 3 cut(s) 217, 253, 574
Cfr10I RCCGGY 2 cut(s) 269, 328
Cfr13I GGNCC 6 cut(s) 80, 193, 297, 455, 531, 827
CseI GACGC 1 cut(s) 712
Csp6I GTAC 4 cut(s) 69, 489, 789, 800
CviAII CATG 8 cut(s) 452, 573, 667, 702, 720, 909, 929, 1050
CviQI GTAC 4 cut(s) 69, 489, 789, 800
DdeI CTNAG 4 cut(s) 62, 153, 324, 688
DpnI GATC 2 cut(s) 592, 671
DpnII GATC 2 cut(s) 590, 669
DraI TTTAAA 1 cut(s) 639
DrdI GACNNNNNNGTC 1 cut(s) 972
DseDI GACNNNNNNGTC 1 cut(s) 972
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
EciI GGCGGA 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 227
Eco130I CCWWGG 2 cut(s) 506, 778
Eco24I GRGCYC 2 cut(s) 164, 229
Eco32I GATATC 1 cut(s) 1047
Eco47I GGWCC 3 cut(s) 193, 531, 827
Eco53kI GAGCTC 1 cut(s) 227
Eco57I CTGAAG 2 cut(s) 912, 963
EcoICRI GAGCTC 1 cut(s) 227
EcoNI CCTNNNNNAGG 1 cut(s) 462
EcoO109I RGGNCCY 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 82
EcoRV GATATC 1 cut(s) 1047
EcoT14I CCWWGG 2 cut(s) 506, 778
EcoT38I GRGCYC 2 cut(s) 164, 229
ErhI CCWWGG 2 cut(s) 506, 778
FaeI CATG 8 cut(s) 455, 576, 670, 705, 723, 912, 932, 1053
FaqI GGGAC 2 cut(s) 64, 544
FatI CATG 8 cut(s) 451, 572, 666, 701, 719, 908, 928, 1049
FbaI TGATCA 1 cut(s) 669
Fnu4HI GCNGC 5 cut(s) 99, 220, 552, 563, 882
FriOI GRGCYC 2 cut(s) 164, 229
Fsp4HI GCNGC 5 cut(s) 99, 220, 552, 563, 882
FspBI CTAG 1 cut(s) 1079
GluI GCNGC 5 cut(s) 99, 220, 552, 563, 882
GsuI CTGGAG 1 cut(s) 981
HaeIII GGCC 5 cut(s) 82, 255, 273, 299, 456
HapII CCGG 4 cut(s) 256, 270, 329, 812
HgaI GACGC 1 cut(s) 712
Hin1II CATG 8 cut(s) 455, 576, 670, 705, 723, 912, 932, 1053
HincII GTYRAC 2 cut(s) 580, 991
HindII GTYRAC 2 cut(s) 580, 991
HindIII AAGCTT 1 cut(s) 1035
HinfI GANTC 4 cut(s) 149, 345, 413, 461
HpaII CCGG 4 cut(s) 256, 270, 329, 812
HphI GGTGA 2 cut(s) 422, 620
Hpy166II GTNNAC 3 cut(s) 580, 926, 991
Hpy188I TCNGA 6 cut(s) 44, 134, 287, 691, 892, 943
Hpy188III TCNNGA 7 cut(s) 191, 241, 342, 438, 517, 835, 960
Hpy8I GTNNAC 3 cut(s) 580, 926, 991
HpyAV CCTTC 2 cut(s) 887, 941
HpyCH4III ACNGT 3 cut(s) 57, 663, 752
HpyCH4V TGCA 5 cut(s) 185, 364, 565, 659, 845
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 4 cut(s) 62, 153, 324, 688
Hsp92II CATG 8 cut(s) 455, 576, 670, 705, 723, 912, 932, 1053
Ksp22I TGATCA 1 cut(s) 669
Kzo9I GATC 2 cut(s) 590, 669
LmnI GCTCC 3 cut(s) 141, 159, 224
Lsp1109I GCAGC 3 cut(s) 538, 549, 893
MaeI CTAG 1 cut(s) 1079
MaeIII GTNAC 1 cut(s) 397
MalI GATC 2 cut(s) 592, 671
MboI GATC 2 cut(s) 590, 669
MboII GAAGA 7 cut(s) 100, 453, 658, 704, 895, 948, 956
MflI RGATCY 1 cut(s) 590
MhlI GDGCHC 2 cut(s) 164, 229
MluCI AATT 6 cut(s) 22, 29, 366, 477, 885, 1027
MlyI GAGTC 2 cut(s) 143, 422
MmeI TCCRAC 1 cut(s) 848
MroXI GAANNNNTTC 2 cut(s) 819, 937
MseI TTAA 2 cut(s) 419, 638
MslI CAYNNNNRTG 3 cut(s) 308, 390, 1068
MspA1I CMGCKG 2 cut(s) 374, 675
MspCI CTTAAG 1 cut(s) 418
MspI CCGG 4 cut(s) 256, 270, 329, 812
MspR9I CCNGG 2 cut(s) 84, 257
Mva1269I GAATGC 2 cut(s) 565, 952
MvaI CCWGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 361
NciI CCSGG 1 cut(s) 257
NdeII GATC 2 cut(s) 590, 669
NlaIII CATG 8 cut(s) 455, 576, 670, 705, 723, 912, 932, 1053
NlaIV GGNNCC 4 cut(s) 161, 298, 532, 1072
NspI RCATGY 2 cut(s) 576, 723
NspV TTCGAA 1 cut(s) 26
OliI CACNNNNGTG 2 cut(s) 308, 1068
PaeI GCATGC 1 cut(s) 576
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 2 cut(s) 565, 952
PdmI GAANNNNTTC 2 cut(s) 819, 937
PfeI GAWTC 2 cut(s) 345, 461
PflFI GACNNNGTC 1 cut(s) 447
PkrI GCNGC 5 cut(s) 100, 221, 553, 564, 883
PleI GAGTC 2 cut(s) 143, 421
PpsI GAGTC 2 cut(s) 143, 421
PshAI GACNNNNGTC 1 cut(s) 536
Psp124BI GAGCTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 4 cut(s) 161, 298, 532, 1072
PspPI GGNCC 6 cut(s) 80, 193, 297, 455, 531, 827
PstI CTGCAG 1 cut(s) 847
PsuI RGATCY 1 cut(s) 590
PsyI GACNNNGTC 1 cut(s) 447
RsaI GTAC 4 cut(s) 70, 490, 790, 801
RsaNI GTAC 4 cut(s) 69, 489, 789, 800
RseI CAYNNNNRTG 3 cut(s) 308, 390, 1068
SacI GAGCTC 1 cut(s) 229
SaqAI TTAA 2 cut(s) 419, 638
SatI GCNGC 5 cut(s) 99, 220, 552, 563, 882
Sau3AI GATC 2 cut(s) 590, 669
Sau96I GGNCC 6 cut(s) 80, 193, 297, 455, 531, 827
ScaI AGTACT 1 cut(s) 70
SchI GAGTC 2 cut(s) 143, 422
ScrFI CCNGG 2 cut(s) 84, 257
SduI GDGCHC 2 cut(s) 164, 229
SfcI CTRYAG 2 cut(s) 748, 843
SfuI TTCGAA 1 cut(s) 26
SinI GGWCC 3 cut(s) 193, 531, 827
SmiMI CAYNNNNRTG 3 cut(s) 308, 390, 1068
SmlI CTYRAG 2 cut(s) 418, 524
SmoI CTYRAG 2 cut(s) 418, 524
SphI GCATGC 1 cut(s) 576
Sse9I AATT 6 cut(s) 22, 29, 366, 477, 885, 1027
SsiI CCGC 7 cut(s) 98, 101, 219, 222, 372, 675, 705
SspMI CTAG 1 cut(s) 1079
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 2 cut(s) 82, 255
StyI CCWWGG 2 cut(s) 506, 778
TaaI ACNGT 3 cut(s) 57, 663, 752
TaqI TCGA 1 cut(s) 26
TasI AATT 6 cut(s) 22, 29, 366, 477, 885, 1027
TatI WGTACW 2 cut(s) 68, 799
TauI GCSGC 2 cut(s) 101, 222
TfiI GAWTC 2 cut(s) 345, 461
Tru1I TTAA 2 cut(s) 419, 638
Tru9I TTAA 2 cut(s) 419, 638
TscAI CASTG 4 cut(s) 161, 310, 499, 1072
TseI GCWGC 3 cut(s) 551, 562, 881
TspDTI ATGAA 3 cut(s) 690, 780, 794
TspRI CASTG 4 cut(s) 161, 310, 499, 1072
Tth111I GACNNNGTC 1 cut(s) 447
Vha464I CTTAAG 1 cut(s) 418
VpaK11BI GGWCC 3 cut(s) 193, 531, 827
XagI CCTNNNNNAGG 1 cut(s) 462
XapI RAATTY 4 cut(s) 22, 366, 477, 1027
XceI RCATGY 2 cut(s) 576, 723
XmnI GAANNNNTTC 2 cut(s) 819, 937
XspI CTAG 1 cut(s) 1079
ZrmI AGTACT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.