Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_520

Orthogroup ID

OG0005060

Physical Location & Seq

Genomic Coordinates Forward (+)

360537 .. 362209

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom520g00440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGATCAGCAAACTGCCATGCTCCGAAGAAGTTGCTTGTGGTGGCTATCACACTTGTGTCTTAACAAGTGGTGGAGAACTGTACAGTTGGGGATCAAATGAAAATGGGTGCCTTGGCATTGGTACGACAGATGTTTTTCACCACCCAGAAAGAGTTCAGGGACCTTTTTTAAAATCCCCGATTGTCAAGGTATCGTGCGGTTGGAAGCATACAGCTGCAATTTCTGAAGGCAATATTTATACATGGGGTTGGGGAGGTTCCCTTGGAACATTTTCCGAAGACGGACATTCTTCTGGAGGACAACTGGGTCATGGAACTGATGTTGACTACATAAAACCTACAATGGTTACGTTTGGGCAGAATGTGAAAGCACTACAAATATCATGTGGATTCAATCACACTGGTGCCATAGTTGAATACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

RCC1

Protein Analysis

142

Amino Acids

14.96

Weight (kDa)

5.71

Isoelectric Point (pI)

27.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08710 AT5G08710
fragaria_vesca	FvH4_1g25640 FvH4_1g25640 FvH4_1g25640 FvH4_1g25640 FvH4_1g25640 FvH4_1g25640 FvH4_1g25640 FvH4_1g25640
malus_domestica	MD00G1127500.v1.1
prunus_persica	Prupe.4G282400_v2.0.a1 Prupe.4G282400_v2.0.a1 Prupe.4G282400_v2.0.a1 Prupe.4G282400_v2.0.a1 Prupe.4G282400_v2.0.a1 Prupe.4G282400_v2.0.a1
pyrus_communis	pycom520g00430 pycom520g00440
rosa_chinensis	RchiOBHm_Chr2g0123961
rosa_laevigata	RLG00000018778
rosa_multiflora	Rmu_sc0000452.1_g000003 Rmu_sc0002845.1_g000025
rosa_roxburghii	Rroxscaffold_2G00120200
rosa_rugosa	Rorug02G0248300
rosa_samantha	Rh2AG307200 Rh2BG316200 Rh2CG293900 Rh2DG330800
rosa_wichuraiana	Rw2G024740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	306
AccB1I	GGYRCC	2 cut(s)	108, 404
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	2 cut(s)	83, 124
AgsI	TTSAA	2 cut(s)	394, 416
AleI	CACNNNNGTG	2 cut(s)	54, 402
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
AlwI	GGATC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	215
Asp700I	GAANNNNTTC	2 cut(s)	153, 271
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	161
BanI	GGYRCC	2 cut(s)	108, 404
BbsI	GAAGAC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	202
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BclI	TGATCA	1 cut(s)	3
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	4 cut(s)	110, 162, 259, 406
BmrI	ACTGGG	1 cut(s)	314
BmuI	ACTGGG	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	285
BpmI	CTGGAG	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	112, 262
Bse1I	ACTGG	2 cut(s)	309, 406
BseDI	CCNNGG	2 cut(s)	112, 262
BseNI	ACTGG	2 cut(s)	309, 406
BseXI	GCAGC	1 cut(s)	202
BshNI	GGYRCC	2 cut(s)	108, 404
BslFI	GGGAC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	3, 92
BspACI	CCGC	1 cut(s)	198
BspLI	GGNNCC	4 cut(s)	110, 162, 259, 406
BspPI	GGATC	1 cut(s)	100
BspT107I	GGYRCC	2 cut(s)	108, 404
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	309, 406
BssECI	CCNNGG	2 cut(s)	112, 262
BssMI	GATC	2 cut(s)	3, 92
BssT1I	CCWWGG	2 cut(s)	112, 262
Bst4CI	ACNGT	2 cut(s)	81, 86
BstAUI	TGTACA	1 cut(s)	81
BstKTI	GATC	2 cut(s)	6, 95
BstMBI	GATC	2 cut(s)	3, 92
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	82, 123
CviAII	CATG	4 cut(s)	18, 243, 311, 384
CviJI	RGCY	2 cut(s)	45, 215
CviKI_1	RGCY	2 cut(s)	45, 215
CviQI	GTAC	2 cut(s)	82, 123
DpnI	GATC	2 cut(s)	5, 94
DpnII	GATC	2 cut(s)	3, 92
DraI	TTTAAA	1 cut(s)	171
DrdI	GACNNNNNNGTC	1 cut(s)	306
DseDI	GACNNNNNNGTC	1 cut(s)	306
Eco130I	CCWWGG	2 cut(s)	112, 262
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	161
EcoT14I	CCWWGG	2 cut(s)	112, 262
ErhI	CCWWGG	2 cut(s)	112, 262
FaeI	CATG	4 cut(s)	21, 246, 314, 387
FaiI	YATR	9 cut(s)	19, 210, 240, 244, 312, 332, 385, 410, 424
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	4 cut(s)	17, 242, 310, 383
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	216
GsuI	CTGGAG	1 cut(s)	315
Hin1II	CATG	4 cut(s)	21, 246, 314, 387
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	390
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	3 cut(s)	25, 226, 277
Hpy188III	TCNNGA	1 cut(s)	294
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	2 cut(s)	81, 86
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	4 cut(s)	21, 246, 314, 387
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 92
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	5 cut(s)	143, 159, 279, 290, 387
Lsp1109I	GCAGC	1 cut(s)	202
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	2 cut(s)	5, 94
MboI	GATC	2 cut(s)	3, 92
MboII	GAAGA	3 cut(s)	38, 282, 290
MluCI	AATT	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	2 cut(s)	248, 290
MroXI	GAANNNNTTC	2 cut(s)	153, 271
MseI	TTAA	2 cut(s)	62, 170
MslI	CAYNNNNRTG	2 cut(s)	54, 402
MspA1I	CMGCKG	1 cut(s)	215
NdeII	GATC	2 cut(s)	3, 92
NlaIII	CATG	4 cut(s)	21, 246, 314, 387
NlaIV	GGNNCC	4 cut(s)	110, 162, 259, 406
OliI	CACNNNNGTG	2 cut(s)	54, 402
PdmI	GAANNNNTTC	2 cut(s)	153, 271
PfeI	GAWTC	1 cut(s)	390
PkrI	GCNGC	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	161
PspN4I	GGNNCC	4 cut(s)	110, 162, 259, 406
PspPI	GGNCC	1 cut(s)	161
PspPPI	RGGWCCY	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	2 cut(s)	83, 124
RsaNI	GTAC	2 cut(s)	82, 123
RseI	CAYNNNNRTG	2 cut(s)	54, 402
SaqAI	TTAA	2 cut(s)	62, 170
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	3, 92
Sau96I	GGNCC	1 cut(s)	161
SetI	ASST	6 cut(s)	166, 192, 217, 259, 340, 353
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	2 cut(s)	54, 402
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	1 cut(s)	198
SspI	AATATT	1 cut(s)	235
StyI	CCWWGG	2 cut(s)	112, 262
TaaI	ACNGT	2 cut(s)	81, 86
TaiI	ACGT	1 cut(s)	353
TasI	AATT	1 cut(s)	219
TatI	WGTACW	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	2 cut(s)	62, 170
Tru9I	TTAA	2 cut(s)	62, 170
TscAI	CASTG	1 cut(s)	406
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	114
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	161
XmnI	GAANNNNTTC	2 cut(s)	153, 271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.