RLG00000018778

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005060
Physical Location & Seq
Reverse (-)
35946027 .. 35955848
9822 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018778

Sequence Viewer

Length: 1251 bp
ATGGCGAACTTGAATTCGAAATTAGGGTTGTTCCGATTAGGGACACGGTGGCTGAGCAGTACTGGGAGTGGGCCAGGGAAGAGGGTCGCGGCGGTTTGGGGCAATGGAGACTACGGGAGGCTCGGCTTAGGGAGCTTGGACTCTCAGTGGAGCCCTACCCCTCTGCTCTGCTCTGCATTTCAGGACCAAAGCCTTGAAGCCGTTGCTTGCGGCGGAGCTCACACTCTGTTCTTGACCCAAGCTGGCCGGGTTTTCGCCACCGGGCTTAATGATTTCGGACAGCTTGGGGCCTCCGCTGATGTGCATTATGCTACTGAGCCGGTGGAGGTATCAGGAATCAACAAGCCAGTTGTGCAAATTTCCGCTGGATATTATCATTCTTGTGCTGTTACAGAAGATGGAGAGTTATACATGTGGGGGAAGAACTCATATGGGCAGCTTGGCCTTGGAAAGAGAGGAGCAAAAACAGTTCATGCACCAACAAAAGTTGAATGCTTGGCTGGAATCGCCATTAGGATGGTAGCTTTGGGATCAGAGCACTCAGTGGCTGTTACTGATGGAGGTGAGTCCTTAAGTTGGGGAGGAGGTTCTGGAAGACTTGGTCATGGCCCTGAATCTGGAATTTTAGGAATTTTCAAAAGTACCAGTGAATATACACCAAGGCTTATCAAGAAACTTGAGGGGACCAAAGTCAAAAAAGTTGCTGCTGGATTGCTGCATTCAGCATGCGTTGACGAGAATGGATCTGTATTCGTATTTGGTGAAAGAGCAGTAGATAGAATGGGGAGTTTAAAGGGGAAGAATGGAACTGCACCGTCCATGATCAGCAGACTGCCCTGCTCAGAAGAAGTTTCATGCGGTGGCTATCACACATGCGTCATAACAAGTGGTGGAGAACTCTACAGTTGGGGTTCAAATGAAAATGGTTGCCTTGGTATTGGTACTACTGATGTACTTCATCTGCCGGAAAGAGTTCGAGGTCCATTCTTGAAATCTGCAGTTATCAAGGTATCTTGTGGTTGGAAGCATACAGCAGCAATTTCTGAAGGCAATATCTTCACATGGGGTTGGGGAGGTTCACATGGAACATTTTCTGAAGAAGGGCATTCTTCTGGAGGACAACTGGGTCAGGGAACTGATGTTGACTACATAAAACCTACGAGGGTCAACTTTGGGGAGAATTTGAAAGCTTTACAGATATCATGTGGGTTCAATCACACTGGTGCCATACTAGAATACACCCAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1

Protein Analysis

417

Amino Acids

43.57

Weight (kDa)

7.18

Isoelectric Point (pI)

27.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 31 - 407 1.2e-85 RCC1-like domain
RCC1 PF00415 33 - 78 2.5e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 67 - 94 9.5e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 82 - 130 7.5e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 117 - 146 4.6e-15 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 133 - 184 3.8e-14 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 191 - 244 6.6e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 284 - 310 1e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 298 - 347 3.4e-14 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 369 - 410 3.1e-07 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1125
AccB1I GGYRCC 1 cut(s) 1223
AccII CGCG 1 cut(s) 89
AciI CCGC 7 cut(s) 89, 92, 210, 213, 294, 363, 858
AclWI GGATC 2 cut(s) 538, 751
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 5 cut(s) 13, 357, 621, 630, 1180
AcuI CTGAAG 2 cut(s) 1065, 1116
AdeI CACNNNGTG 1 cut(s) 544
AfaI GTAC 4 cut(s) 61, 643, 943, 954
AfiI CCNNNNNNNGG 2 cut(s) 576, 617
AflII CTTAAG 1 cut(s) 571
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 8 cut(s) 13, 197, 491, 637, 915, 991, 1186, 1213
AjnI CCWGG 1 cut(s) 73
AleI CACNNNNGTG 1 cut(s) 1221
AluBI AGCT 8 cut(s) 135, 218, 242, 283, 439, 524, 1190, 1247
AluI AGCT 8 cut(s) 135, 218, 242, 283, 439, 524, 1190, 1247
Alw21I GWGCWC 2 cut(s) 220, 540
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 2 cut(s) 538, 751
AlwNI CAGNNNCTG 1 cut(s) 548
AoxI GGCC 5 cut(s) 71, 244, 288, 442, 607
ApeKI GCWGC 4 cut(s) 436, 704, 715, 1034
ApoI RAATTY 5 cut(s) 13, 357, 621, 630, 1180
Asp700I GAANNNNTTC 2 cut(s) 972, 1090
AspS9I GGNCC 6 cut(s) 71, 184, 288, 608, 684, 980
AsuC2I CCSGG 2 cut(s) 248, 262
AsuHPI GGTGA 2 cut(s) 575, 773
AsuII TTCGAA 1 cut(s) 17
AvaII GGWCC 3 cut(s) 184, 684, 980
BanI GGYRCC 1 cut(s) 1223
BanII GRGCYC 2 cut(s) 155, 220
BbsI GAAGAC 1 cut(s) 601
Bbv12I GWGCWC 2 cut(s) 220, 540
BbvI GCAGC 4 cut(s) 448, 691, 702, 1046
BccI CCATC 3 cut(s) 392, 511, 551
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 75
BclI TGATCA 1 cut(s) 822
BcnI CCSGG 2 cut(s) 248, 262
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 1 cut(s) 1232
BfmI CTRYAG 2 cut(s) 901, 996
BfrI CTTAAG 1 cut(s) 571
BisI GCNGC 6 cut(s) 90, 211, 437, 705, 716, 1035
BlpI GCTNAGC 1 cut(s) 53
BlsI GCNGC 6 cut(s) 91, 212, 438, 706, 717, 1036
BmcAI AGTACT 1 cut(s) 61
Bme1390I CCNGG 3 cut(s) 75, 248, 262
Bme18I GGWCC 3 cut(s) 184, 684, 980
BmgT120I GGNCC 6 cut(s) 71, 184, 288, 608, 684, 980
BmiI GGNNCC 4 cut(s) 152, 289, 685, 1225
BmrFI CCNGG 3 cut(s) 75, 248, 262
BmrI ACTGGG 2 cut(s) 72, 1133
BmuI ACTGGG 2 cut(s) 72, 1133
BoxI GACNNNNGTC 1 cut(s) 689
BpiI GAAGAC 1 cut(s) 601
BpmI CTGGAG 1 cut(s) 1134
Bpu10I CCTNAGC 1 cut(s) 127
Bpu1102I GCTNAGC 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 698
BpuMI CCSGG 2 cut(s) 248, 262
BsaJI CCNNGG 4 cut(s) 74, 445, 659, 931
Bsc4I CCNNNNNNNGG 2 cut(s) 576, 617
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 5 cut(s) 67, 347, 645, 1128, 1225
Bse3DI GCAATG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 4 cut(s) 74, 445, 659, 931
BseGI GGATG 1 cut(s) 522
BseLI CCNNNNNNNGG 2 cut(s) 576, 617
BseMI GCAATG 1 cut(s) 109
BseMII CTCAG 5 cut(s) 44, 158, 306, 555, 855
BseNI ACTGG 5 cut(s) 67, 347, 645, 1128, 1225
BseRI GAGGAG 2 cut(s) 471, 597
BseXI GCAGC 4 cut(s) 448, 691, 702, 1046
BsgI GTGCAG 1 cut(s) 795
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 5 cut(s) 73, 246, 290, 444, 609
BshNI GGYRCC 1 cut(s) 1223
BsiHKAI GWGCWC 2 cut(s) 220, 540
BsiSI CCGG 4 cut(s) 247, 261, 320, 965
BslFI GGGAC 2 cut(s) 55, 697
BslI CCNNNNNNNGG 2 cut(s) 576, 617
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 2 cut(s) 55, 697
BsmI GAATGC 3 cut(s) 497, 718, 1105
BsnI GGCC 5 cut(s) 73, 246, 290, 444, 609
Bsp119I TTCGAA 1 cut(s) 17
Bsp1286I GDGCHC 3 cut(s) 155, 220, 540
Bsp143I GATC 3 cut(s) 530, 743, 822
Bsp1720I GCTNAGC 1 cut(s) 53
BspACI CCGC 7 cut(s) 89, 92, 210, 213, 294, 363, 858
BspANI GGCC 5 cut(s) 73, 246, 290, 444, 609
BspCNI CTCAG 5 cut(s) 45, 157, 307, 554, 854
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 4 cut(s) 152, 289, 685, 1225
BspMAI CTGCAG 1 cut(s) 1000
BspPI GGATC 2 cut(s) 538, 751
BspT104I TTCGAA 1 cut(s) 17
BspT107I GGYRCC 1 cut(s) 1223
BspTI CTTAAG 1 cut(s) 571
BsrDI GCAATG 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 5 cut(s) 67, 347, 645, 1128, 1225
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 4 cut(s) 74, 445, 659, 931
BssMI GATC 3 cut(s) 530, 743, 822
BssT1I CCWWGG 3 cut(s) 445, 659, 931
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 4 cut(s) 48, 469, 816, 905
Bst6I CTCTTC 1 cut(s) 74
BstAFI CTTAAG 1 cut(s) 571
BstBI TTCGAA 1 cut(s) 17
BstC8I GCNNGC 3 cut(s) 208, 244, 727
BstDEI CTNAG 6 cut(s) 53, 127, 144, 315, 541, 841
BstF5I GGATG 1 cut(s) 522
BstFNI CGCG 1 cut(s) 89
BstKTI GATC 3 cut(s) 533, 746, 825
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 3 cut(s) 530, 743, 822
BstMWI GCNNNNNNNGC 3 cut(s) 132, 352, 506
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 3 cut(s) 415, 729, 876
BstPAI GACNNNNGTC 1 cut(s) 689
BstSCI CCNGG 3 cut(s) 73, 246, 260
BstSFI CTRYAG 2 cut(s) 901, 996
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 4 cut(s) 448, 691, 702, 1046
BstV2I GAAGAC 1 cut(s) 601
BstX2I RGATCY 1 cut(s) 743
BstXI CCANNNNNNTGG 1 cut(s) 517
BstYI RGATCY 1 cut(s) 743
BsuRI GGCC 5 cut(s) 73, 246, 290, 444, 609
BtsCI GGATG 1 cut(s) 522
BtsIMutI CAGTG 4 cut(s) 152, 549, 652, 1218
Cac8I GCNNGC 3 cut(s) 208, 244, 727
CaiI CAGNNNCTG 1 cut(s) 548
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 6 cut(s) 71, 184, 288, 608, 684, 980
CseI GACGC 1 cut(s) 865
Csp6I GTAC 4 cut(s) 60, 642, 942, 953
CviQI GTAC 4 cut(s) 60, 642, 942, 953
DdeI CTNAG 6 cut(s) 53, 127, 144, 315, 541, 841
DpnI GATC 3 cut(s) 532, 745, 824
DpnII GATC 3 cut(s) 530, 743, 822
DraI TTTAAA 1 cut(s) 792
DraIII CACNNNGTG 1 cut(s) 544
DrdI GACNNNNNNGTC 1 cut(s) 1125
DseDI GACNNNNNNGTC 1 cut(s) 1125
EaeI YGGCCR 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 218
Eco130I CCWWGG 3 cut(s) 445, 659, 931
Eco24I GRGCYC 2 cut(s) 155, 220
Eco32I GATATC 1 cut(s) 1200
Eco47I GGWCC 3 cut(s) 184, 684, 980
Eco53kI GAGCTC 1 cut(s) 218
Eco57I CTGAAG 2 cut(s) 1065, 1116
EcoICRI GAGCTC 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 73
EcoRV GATATC 1 cut(s) 1200
EcoT14I CCWWGG 3 cut(s) 445, 659, 931
EcoT38I GRGCYC 2 cut(s) 155, 220
ErhI CCWWGG 3 cut(s) 445, 659, 931
FaqI GGGAC 2 cut(s) 55, 697
FauNDI CATATG 1 cut(s) 430
FbaI TGATCA 1 cut(s) 822
Fnu4HI GCNGC 6 cut(s) 90, 211, 437, 705, 716, 1035
FokI GGATG 1 cut(s) 529
FriOI GRGCYC 2 cut(s) 155, 220
Fsp4HI GCNGC 6 cut(s) 90, 211, 437, 705, 716, 1035
FspBI CTAG 1 cut(s) 1232
GluI GCNGC 6 cut(s) 90, 211, 437, 705, 716, 1035
GsuI CTGGAG 1 cut(s) 1134
HaeIII GGCC 5 cut(s) 73, 246, 290, 444, 609
HapII CCGG 4 cut(s) 247, 261, 320, 965
HgaI GACGC 1 cut(s) 865
HincII GTYRAC 3 cut(s) 733, 1144, 1168
HindII GTYRAC 3 cut(s) 733, 1144, 1168
HindIII AAGCTT 2 cut(s) 1188, 1245
HinfI GANTC 5 cut(s) 140, 336, 504, 566, 614
HpaII CCGG 4 cut(s) 247, 261, 320, 965
HphI GGTGA 2 cut(s) 575, 773
Hpy166II GTNNAC 4 cut(s) 733, 1079, 1144, 1168
Hpy188I TCNGA 6 cut(s) 35, 278, 535, 844, 1045, 1096
Hpy188III TCNNGA 8 cut(s) 182, 232, 333, 591, 618, 670, 988, 1113
Hpy8I GTNNAC 4 cut(s) 733, 1079, 1144, 1168
HpyAV CCTTC 2 cut(s) 1040, 1094
HpyCH4III ACNGT 4 cut(s) 48, 469, 816, 905
HpyCH4V TGCA 7 cut(s) 176, 304, 355, 476, 718, 812, 998
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 352, 506
HpyF3I CTNAG 6 cut(s) 53, 127, 144, 315, 541, 841
Ksp22I TGATCA 1 cut(s) 822
Kzo9I GATC 3 cut(s) 530, 743, 822
LmnI GCTCC 4 cut(s) 132, 150, 215, 458
Lsp1109I GCAGC 4 cut(s) 448, 691, 702, 1046
MaeI CTAG 1 cut(s) 1232
MaeIII GTNAC 2 cut(s) 388, 550
MalI GATC 3 cut(s) 532, 745, 824
MboI GATC 3 cut(s) 530, 743, 822
MboII GAAGA 9 cut(s) 91, 407, 433, 606, 811, 857, 1048, 1101, 1109
MflI RGATCY 1 cut(s) 743
MhlI GDGCHC 3 cut(s) 155, 220, 540
MluCI AATT 7 cut(s) 13, 20, 357, 621, 630, 1038, 1180
MlyI GAGTC 2 cut(s) 134, 575
MmeI TCCRAC 1 cut(s) 1001
MroXI GAANNNNTTC 2 cut(s) 972, 1090
MseI TTAA 4 cut(s) 267, 572, 791, 1249
MslI CAYNNNNRTG 3 cut(s) 381, 515, 1221
MspA1I CMGCKG 2 cut(s) 296, 365
MspCI CTTAAG 1 cut(s) 571
MspI CCGG 4 cut(s) 247, 261, 320, 965
MspR9I CCNGG 3 cut(s) 75, 248, 262
Mva1269I GAATGC 3 cut(s) 497, 718, 1105
MvaI CCWGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 3 cut(s) 132, 352, 506
NciI CCSGG 2 cut(s) 248, 262
NdeI CATATG 1 cut(s) 430
NdeII GATC 3 cut(s) 530, 743, 822
NlaIV GGNNCC 4 cut(s) 152, 289, 685, 1225
NmeAIII GCCGAG 1 cut(s) 102
NspI RCATGY 3 cut(s) 415, 729, 876
NspV TTCGAA 1 cut(s) 17
OliI CACNNNNGTG 1 cut(s) 1221
PaeI GCATGC 1 cut(s) 729
PciI ACATGT 1 cut(s) 411
PctI GAATGC 3 cut(s) 497, 718, 1105
PdmI GAANNNNTTC 2 cut(s) 972, 1090
PfeI GAWTC 3 cut(s) 336, 504, 614
PflFI GACNNNGTC 1 cut(s) 600
PkrI GCNGC 6 cut(s) 91, 212, 438, 706, 717, 1036
PleI GAGTC 2 cut(s) 134, 574
PpsI GAGTC 2 cut(s) 134, 574
PscI ACATGT 1 cut(s) 411
PshAI GACNNNNGTC 1 cut(s) 689
Psp124BI GAGCTC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 4 cut(s) 152, 289, 685, 1225
PspPI GGNCC 6 cut(s) 71, 184, 288, 608, 684, 980
PstI CTGCAG 1 cut(s) 1000
PstNI CAGNNNCTG 1 cut(s) 548
PsuI RGATCY 1 cut(s) 743
PsyI GACNNNGTC 1 cut(s) 600
RsaI GTAC 4 cut(s) 61, 643, 943, 954
RsaNI GTAC 4 cut(s) 60, 642, 942, 953
RseI CAYNNNNRTG 3 cut(s) 381, 515, 1221
SacI GAGCTC 1 cut(s) 220
SaqAI TTAA 4 cut(s) 267, 572, 791, 1249
SatI GCNGC 6 cut(s) 90, 211, 437, 705, 716, 1035
Sau3AI GATC 3 cut(s) 530, 743, 822
Sau96I GGNCC 6 cut(s) 71, 184, 288, 608, 684, 980
ScaI AGTACT 1 cut(s) 61
SchI GAGTC 2 cut(s) 134, 575
ScrFI CCNGG 3 cut(s) 75, 248, 262
SduI GDGCHC 3 cut(s) 155, 220, 540
SfcI CTRYAG 2 cut(s) 901, 996
SfuI TTCGAA 1 cut(s) 17
SinI GGWCC 3 cut(s) 184, 684, 980
SmiMI CAYNNNNRTG 3 cut(s) 381, 515, 1221
SmlI CTYRAG 2 cut(s) 571, 677
SmoI CTYRAG 2 cut(s) 571, 677
SphI GCATGC 1 cut(s) 729
Sse9I AATT 7 cut(s) 13, 20, 357, 621, 630, 1038, 1180
SsiI CCGC 7 cut(s) 89, 92, 210, 213, 294, 363, 858
SspMI CTAG 1 cut(s) 1232
SstI GAGCTC 1 cut(s) 220
StyD4I CCNGG 3 cut(s) 73, 246, 260
StyI CCWWGG 3 cut(s) 445, 659, 931
TaaI ACNGT 4 cut(s) 48, 469, 816, 905
TaqI TCGA 2 cut(s) 17, 976
TasI AATT 7 cut(s) 13, 20, 357, 621, 630, 1038, 1180
TatI WGTACW 2 cut(s) 59, 952
TauI GCSGC 2 cut(s) 92, 213
TfiI GAWTC 3 cut(s) 336, 504, 614
Tru1I TTAA 4 cut(s) 267, 572, 791, 1249
Tru9I TTAA 4 cut(s) 267, 572, 791, 1249
TscAI CASTG 4 cut(s) 152, 549, 652, 1225
TseI GCWGC 4 cut(s) 436, 704, 715, 1034
TspDTI ATGAA 4 cut(s) 461, 843, 933, 947
TspRI CASTG 4 cut(s) 152, 549, 652, 1225
Tth111I GACNNNGTC 1 cut(s) 600
Vha464I CTTAAG 1 cut(s) 571
VpaK11BI GGWCC 3 cut(s) 184, 684, 980
XapI RAATTY 5 cut(s) 13, 357, 621, 630, 1180
XceI RCATGY 3 cut(s) 415, 729, 876
XmnI GAANNNNTTC 2 cut(s) 972, 1090
XspI CTAG 1 cut(s) 1232
ZrmI AGTACT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.