Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010311

Physical Location & Seq

Genomic Coordinates Forward (+)

9466355 .. 9470487

Gene Structure 4133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G081300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCAGTATTTGGTACTAGCATTGCATAGTGCCGGTGGGAAAAAGGCAACCTCTACTCTACCCAGAAAAAAAGAAAAAGAAAAGAGAACAAGTGTTGCCGGCTCTAGCGGATCCCGCCTCAGTCTATTTCATCTTCCTCTATCCCAAGCTCCCAACTTCCTATCTCTGTTTGCGAAAATGGCAGTCTCTTTTCACCCGACCACTTCTACTCCAAGCTTTCAGCCCCAAGCTAGACTCGCTCCTCCTCTCAGTTGTGCAACAAAGCATTATTCAGGGTTAAAGCTTCAATCTTTAGGAACTTTTGGAGCTAAAAACCCCAACTTGACGGTTGAGTTCTATGGCAAAGTTAATAAGAGCCTTCAATCCAGGACACGTAACCAAAGACCATCACGAGCGCGAATTGGAATGATGCCTATAGGGACACCAAAGGTGCCCTATAGAACTCCTGGTGAGGGAACTTGGCAATGGGTTGATTTGTGGAATGCTCTATACCGAGAACGTGTTATCTTCATTGGGCAGAATATAGATGAAGAGTTTAGCAATCAGATTTTGGCAACAATGCTGTACCTTGACACTATTGATTCTTCCAAAAGGCTTTATATGTATATCAATGGCCCTGGTGGAGATCTTACTCCGAGCATGGCTATTTATGATACTATGCAGAGCTTAAATAGTCCCGTTGGCACCCATTGTGTGGGCTATGCCTATAATTTAGCAGCCTTTCTTCTTGCAGCTGGAGAAAAGGGCAATCGATTTGCAATGCCACTATCAAGGATTGCGCTACAATCTCCTGCCGGGGCTGCTCGTGGTCAGGCTGATGACATACAAAATGAAGCAAATGAACTTCTCAGAATCAAAGATTACCTTTATAACGAGTTGGCTAAGAACACTGGCCAGCCAGTTGAAAAGATTAACAAAGACTTAGGTCGGATGAAGCGGTTTAATGCACAGGAGGCTCTAGAGTATGGGCTCATTGATCGTGTAGTTAGGCCACCTCGTATTAAGGCTGATGCACCTCCCAAGGATGCGGGAACAGGTCTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009840 GO:0009941 GO:0009987 GO:0010287 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

349

Amino Acids

38.34

Weight (kDa)

9.81

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12410
fragaria_vesca	FvH4_5g00850 FvH4_5g00850 FvH4_5g00850
malus_domestica	MD04G1077600.v1.1 MD06G1063900.v1.1
prunus_persica	Prupe.5G081300_v2.0.a1 Prupe.5G081300_v2.0.a1
pyrus_communis	pycom04g06920 pycom06g06400
rosa_chinensis	RchiOBHm_Chr7g0201061
rosa_laevigata	RLG00000003694
rosa_multiflora	Rmu_sc0006553.1_g000015
rosa_roxburghii	Rroxscaffold_3G00255550
rosa_rugosa	Rorug07G0061700 Rorug07G0061800
rosa_samantha	Rh7AG187600 Rh7BG191100 Rh7CG198600 Rh7DG193300
rosa_wichuraiana	Rw7G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	870
AccB1I	GGYRCC	2 cut(s)	430, 683
AccB7I	CCANNNNNTGG	1 cut(s)	694
AccII	CGCG	1 cut(s)	397
AciI	CCGC	4 cut(s)	108, 115, 937, 1028
AclWI	GGATC	2 cut(s)	105, 118
AcoI	YGGCCR	1 cut(s)	892
AfaI	GTAC	2 cut(s)	15, 566
AfiI	CCNNNNNNNGG	2 cut(s)	452, 694
AflIII	ACRYGT	2 cut(s)	371, 499
AgsI	TTSAA	3 cut(s)	287, 362, 905
AjnI	CCWGG	3 cut(s)	365, 445, 616
AluBI	AGCT	7 cut(s)	149, 216, 230, 283, 308, 666, 734
AluI	AGCT	7 cut(s)	149, 216, 230, 283, 308, 666, 734
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	2 cut(s)	105, 118
AoxI	GGCC	3 cut(s)	613, 892, 989
ApeKI	GCWGC	3 cut(s)	716, 731, 800
AspLEI	GCGC	2 cut(s)	397, 781
AspS9I	GGNCC	1 cut(s)	614
AsuC2I	CCSGG	1 cut(s)	796
AsuHPI	GGTGA	2 cut(s)	185, 461
BaeGI	GKGCMC	1 cut(s)	435
BalI	TGGCCA	1 cut(s)	894
BamHI	GGATCC	1 cut(s)	110
BanI	GGYRCC	2 cut(s)	430, 683
BanII	GRGCYC	1 cut(s)	972
BauI	CACGAG	2 cut(s)	390, 804
BbvI	GCAGC	3 cut(s)	728, 743, 787
BccI	CCATC	1 cut(s)	394
BciT130I	CCWGG	3 cut(s)	367, 447, 618
BcnI	CCSGG	1 cut(s)	796
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	4 cut(s)	17, 105, 231, 959
BfmI	CTRYAG	2 cut(s)	414, 436
BglII	AGATCT	1 cut(s)	625
BisI	GCNGC	3 cut(s)	717, 732, 801
BlsI	GCNGC	3 cut(s)	718, 733, 802
Bme1390I	CCNGG	4 cut(s)	367, 447, 618, 796
BmgT120I	GGNCC	1 cut(s)	614
BmiI	GGNNCC	3 cut(s)	112, 432, 685
BmrFI	CCNGG	4 cut(s)	367, 447, 618, 796
BmsI	GCATC	3 cut(s)	399, 1000, 1015
BoxI	GACNNNNGTC	1 cut(s)	924
BpmI	CTGGAG	1 cut(s)	756
BpuMI	CCSGG	1 cut(s)	796
Bsa29I	ATCGAT	1 cut(s)	751
BsaAI	YACGTR	1 cut(s)	374
BsaJI	CCNNGG	3 cut(s)	616, 795, 1020
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	2 cut(s)	452, 694
Bse118I	RCCGGY	2 cut(s)	32, 98
Bse1I	ACTGG	2 cut(s)	895, 899
Bse3DI	GCAATG	3 cut(s)	20, 470, 765
BseBI	CCWGG	3 cut(s)	367, 447, 618
BseCI	ATCGAT	1 cut(s)	751
BseDI	CCNNGG	3 cut(s)	616, 795, 1020
BseGI	GGATG	2 cut(s)	936, 1030
BseLI	CCNNNNNNNGG	2 cut(s)	452, 694
BseMI	GCAATG	3 cut(s)	20, 470, 765
BseMII	CTCAG	3 cut(s)	133, 262, 862
BseNI	ACTGG	2 cut(s)	895, 899
BseRI	GAGGAG	2 cut(s)	231, 234
BseSI	GKGCMC	1 cut(s)	435
BseXI	GCAGC	3 cut(s)	728, 743, 787
Bsh1236I	CGCG	1 cut(s)	397
BshFI	GGCC	3 cut(s)	615, 894, 991
BshNI	GGYRCC	2 cut(s)	430, 683
BshVI	ATCGAT	1 cut(s)	751
BsiSI	CCGG	3 cut(s)	33, 99, 795
BslFI	GGGAC	2 cut(s)	433, 660
BslI	CCNNNNNNNGG	2 cut(s)	452, 694
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	2 cut(s)	433, 660
BsmI	GAATGC	1 cut(s)	487
BsnI	GGCC	3 cut(s)	615, 894, 991
Bsp1286I	GDGCHC	2 cut(s)	435, 972
Bsp143I	GATC	3 cut(s)	110, 625, 976
BspACI	CCGC	4 cut(s)	108, 115, 937, 1028
BspANI	GGCC	3 cut(s)	615, 894, 991
BspCNI	CTCAG	3 cut(s)	132, 261, 861
BspDI	ATCGAT	1 cut(s)	751
BspFNI	CGCG	1 cut(s)	397
BspLI	GGNNCC	3 cut(s)	112, 432, 685
BspPI	GGATC	2 cut(s)	105, 118
BspT107I	GGYRCC	2 cut(s)	430, 683
BsrDI	GCAATG	3 cut(s)	20, 470, 765
BsrFI	RCCGGY	2 cut(s)	32, 98
BsrI	ACTGG	2 cut(s)	895, 899
BssAI	RCCGGY	2 cut(s)	32, 98
BssECI	CCNNGG	3 cut(s)	616, 795, 1020
BssMI	GATC	3 cut(s)	110, 625, 976
BssSI	CACGAG	2 cut(s)	390, 804
BssT1I	CCWWGG	1 cut(s)	1020
Bst2BI	CACGAG	2 cut(s)	390, 804
Bst2UI	CCWGG	3 cut(s)	367, 447, 618
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	525
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	100, 896
BstDEI	CTNAG	5 cut(s)	119, 248, 848, 882, 922
BstF5I	GGATG	2 cut(s)	936, 1030
BstFNI	CGCG	1 cut(s)	397
BstHHI	GCGC	2 cut(s)	397, 781
BstKTI	GATC	3 cut(s)	113, 628, 979
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	3 cut(s)	110, 625, 976
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 179, 236, 800, 953
BstNI	CCWGG	3 cut(s)	367, 447, 618
BstPAI	GACNNNNGTC	1 cut(s)	924
BstSCI	CCNGG	4 cut(s)	365, 445, 616, 794
BstSFI	CTRYAG	2 cut(s)	414, 436
BstSLI	GKGCMC	1 cut(s)	435
BstUI	CGCG	1 cut(s)	397
BstV1I	GCAGC	3 cut(s)	728, 743, 787
BstX2I	RGATCY	2 cut(s)	110, 625
BstYI	RGATCY	2 cut(s)	110, 625
Bsu15I	ATCGAT	1 cut(s)	751
BsuRI	GGCC	3 cut(s)	615, 894, 991
BsuTUI	ATCGAT	1 cut(s)	751
BtsCI	GGATG	2 cut(s)	936, 1030
BtsIMutI	CAGTG	1 cut(s)	888
Cac8I	GCNNGC	2 cut(s)	100, 896
CfoI	GCGC	2 cut(s)	397, 781
Cfr10I	RCCGGY	2 cut(s)	32, 98
Cfr13I	GGNCC	1 cut(s)	614
ClaI	ATCGAT	1 cut(s)	751
Csp6I	GTAC	2 cut(s)	14, 565
CviAII	CATG	1 cut(s)	640
CviQI	GTAC	2 cut(s)	14, 565
DdeI	CTNAG	5 cut(s)	119, 248, 848, 882, 922
DpnI	GATC	3 cut(s)	112, 627, 978
DpnII	GATC	3 cut(s)	110, 625, 976
EaeI	YGGCCR	1 cut(s)	892
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	1020
Eco24I	GRGCYC	1 cut(s)	972
EcoRII	CCWGG	3 cut(s)	365, 445, 616
EcoT14I	CCWWGG	1 cut(s)	1020
EcoT38I	GRGCYC	1 cut(s)	972
ErhI	CCWWGG	1 cut(s)	1020
FaeI	CATG	1 cut(s)	643
FalI	AAGNNNNNCTT	2 cut(s)	849, 881
FaqI	GGGAC	2 cut(s)	433, 660
FatI	CATG	1 cut(s)	639
FauI	CCCGC	2 cut(s)	122, 1021
Fnu4HI	GCNGC	3 cut(s)	717, 732, 801
FokI	GGATG	2 cut(s)	943, 1037
FriOI	GRGCYC	1 cut(s)	972
Fsp4HI	GCNGC	3 cut(s)	717, 732, 801
FspBI	CTAG	4 cut(s)	17, 105, 231, 959
GlaI	GCGC	2 cut(s)	396, 780
GluI	GCNGC	3 cut(s)	717, 732, 801
GsuI	CTGGAG	1 cut(s)	756
HaeIII	GGCC	3 cut(s)	615, 894, 991
HapII	CCGG	3 cut(s)	33, 99, 795
HhaI	GCGC	2 cut(s)	397, 781
Hin1II	CATG	1 cut(s)	643
Hin6I	GCGC	2 cut(s)	395, 779
HinP1I	GCGC	2 cut(s)	395, 779
HindIII	AAGCTT	2 cut(s)	214, 281
HinfI	GANTC	3 cut(s)	234, 581, 852
HpaII	CCGG	3 cut(s)	33, 99, 795
HphI	GGTGA	2 cut(s)	185, 461
Hpy188I	TCNGA	4 cut(s)	546, 636, 851, 930
Hpy188III	TCNNGA	2 cut(s)	390, 959
HpyAV	CCTTC	1 cut(s)	368
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	2 cut(s)	373, 499
HpyCH4V	TGCA	8 cut(s)	4, 25, 257, 661, 731, 758, 947, 1013
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 179, 236, 800, 953
HpyF3I	CTNAG	5 cut(s)	119, 248, 848, 882, 922
HpySE526I	ACGT	2 cut(s)	373, 499
Hsp92II	CATG	1 cut(s)	643
HspAI	GCGC	2 cut(s)	395, 779
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	110, 625, 976
LmnI	GCTCC	3 cut(s)	154, 244, 305
Lsp1109I	GCAGC	3 cut(s)	728, 743, 787
LweI	GCATC	3 cut(s)	399, 1000, 1015
MaeI	CTAG	4 cut(s)	17, 105, 231, 959
MaeII	ACGT	2 cut(s)	373, 499
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	3 cut(s)	112, 627, 978
MboI	GATC	3 cut(s)	110, 625, 976
MboII	GAAGA	5 cut(s)	125, 499, 542, 576, 716
MflI	RGATCY	2 cut(s)	110, 625
MhlI	GDGCHC	2 cut(s)	435, 972
MlsI	TGGCCA	1 cut(s)	894
MluCI	AATT	2 cut(s)	399, 709
MluNI	TGGCCA	1 cut(s)	894
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	908
MnlI	CCTC	9 cut(s)	61, 128, 147, 252, 255, 445, 946, 1005, 1026
Mox20I	TGGCCA	1 cut(s)	894
MroNI	GCCGGC	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	894
MseI	TTAA	6 cut(s)	278, 348, 668, 912, 942, 1002
Msp20I	TGGCCA	1 cut(s)	894
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	3 cut(s)	33, 99, 795
MspR9I	CCNGG	4 cut(s)	367, 447, 618, 796
Mva1269I	GAATGC	1 cut(s)	487
MvaI	CCWGG	3 cut(s)	367, 447, 618
MvnI	CGCG	1 cut(s)	397
MwoI	GCNNNNNNNGC	5 cut(s)	114, 179, 236, 800, 953
NaeI	GCCGGC	1 cut(s)	100
NciI	CCSGG	1 cut(s)	796
NdeII	GATC	3 cut(s)	110, 625, 976
NgoMIV	GCCGGC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	643
NlaIV	GGNNCC	3 cut(s)	112, 432, 685
PctI	GAATGC	1 cut(s)	487
PdiI	GCCGGC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	581, 852
PflMI	CCANNNNNTGG	1 cut(s)	694
PfoI	TCCNGGA	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	718, 733, 802
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
Ppu21I	YACGTR	1 cut(s)	374
PshAI	GACNNNNGTC	1 cut(s)	924
PsiI	TTATAA	1 cut(s)	870
Psp6I	CCWGG	3 cut(s)	365, 445, 616
PspGI	CCWGG	3 cut(s)	365, 445, 616
PspN4I	GGNNCC	3 cut(s)	112, 432, 685
PspPI	GGNCC	1 cut(s)	614
PsuI	RGATCY	2 cut(s)	110, 625
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	2 cut(s)	15, 566
RsaNI	GTAC	2 cut(s)	14, 565
SaqAI	TTAA	6 cut(s)	278, 348, 668, 912, 942, 1002
SatI	GCNGC	3 cut(s)	717, 732, 801
Sau3AI	GATC	3 cut(s)	110, 625, 976
Sau96I	GGNCC	1 cut(s)	614
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	4 cut(s)	367, 447, 618, 796
SduI	GDGCHC	2 cut(s)	435, 972
SfaNI	GCATC	3 cut(s)	399, 1000, 1015
SfcI	CTRYAG	2 cut(s)	414, 436
Sse9I	AATT	2 cut(s)	399, 709
SsiI	CCGC	4 cut(s)	108, 115, 937, 1028
SspMI	CTAG	4 cut(s)	17, 105, 231, 959
StyD4I	CCNGG	4 cut(s)	365, 445, 616, 794
StyI	CCWWGG	1 cut(s)	1020
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	2 cut(s)	376, 502
TaqI	TCGA	1 cut(s)	751
TasI	AATT	2 cut(s)	399, 709
TfiI	GAWTC	2 cut(s)	581, 852
Tru1I	TTAA	6 cut(s)	278, 348, 668, 912, 942, 1002
Tru9I	TTAA	6 cut(s)	278, 348, 668, 912, 942, 1002
TscAI	CASTG	1 cut(s)	895
TseI	GCWGC	3 cut(s)	716, 731, 800
TspDTI	ATGAA	6 cut(s)	119, 499, 543, 846, 855, 947
TspRI	CASTG	1 cut(s)	895
Van91I	CCANNNNNTGG	1 cut(s)	694
XbaI	TCTAGA	1 cut(s)	958
XspI	CTAG	4 cut(s)	17, 105, 231, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.