Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010311

Physical Location & Seq

Genomic Coordinates Reverse (-)

4494362 .. 4497456

Gene Structure 3095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0061800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCAGTGGAGATGGCCATCAGAGCTTCAGTCACCCCAAGACCTCATATTTCTCTTCCTCCTCCTTCTTCTCCTTCACCATCATCATCCACACCTAAATTTTCTTTCAAACCCCAATTCAGACCCATCTCTGTATCACTCCCAACATCAACTACCCTCTCTCTCTTGGCCCTCTTCACCTCTCCCTTTGAAGCCAAGGCCTTTAGCCTCTCCAAGGATCAAATAGTCTCTTCCCTCACTGAAGTGGAGCAGACAATTGATCAAGTTCAGCAAGTGGGTTCCAGTGTTTTTGTTAACACAGAGCGTTTTCTTGAAGCTTTTTTAAATGCAGTGAAGCCTGGCATGGATGTGGCATTGCCAATTGCTAAGCAGGCTGGAGAACAAGCACTGAAGATAGCTTCTCCTGCAATTTCTGAGGTTTCAAAGAAAGCCCAAGAAGCAATTCAAAGTTCCGGGATTGACACAGAGCCTGTTTACAATGCTGCAAAGACGATAGGTGATGCAGCAGGACAGACCACCAAAGTAATTCAAGATGCCAAACCCATTGCTTCATCAACTGTCGAGACCATTTCATCAGCGGATCCTGTTGTGATTGCTGGAACTGCTGGAGTAATATTCCTCACATACTTCCTTCTTCCTCCAATTTGGTCTGCTATCTCTTTTAACCTCAGAGGATACAAAGGTGCCCTCACTCCTGCTCAAACCCTTGATCTCGTTTCTACGAAGAACCACCTTCTGATCGATATTCGATCAGAGAAGGAAAAGGACAAGGCTGGCATTCCTCGCCTTCCATCTAGTGCCAAAAGCAAATTGATTGCTATTCCCTTGGAAGAACTACCAAGCAAATTGAAAGGCCTAGTCAGAAATGTGAAGAAAGTAGAGGCTGAGATAGCGGCTTTGAAAATTGCTTATCTCAAGAGAGTTAACAAAGGCACCAACATCGTCATCTTGGACTCGTACTCTGATTCAGGTAAAATAGTAGCAAGAGCACTAACTAATCTAGGCTTTAAGAACACCTGGATTGTAGCAGACGGGTTCTCTGGAAACAAAGGGTGGTTACAGAGTCGTTTAGGGATAGATTCATACAATTTCTCCTTTGCTGAGGTGATATCACCGTCAAGAATCATCCCAGCAGCTACCAGACGTTTTGGTACTACAGCTCAGTCTGGTCGAAAGCTTCTTTCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009840 GO:0009941 GO:0009987 GO:0010287 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

396

Amino Acids

42.37

Weight (kDa)

9.64

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12410
fragaria_vesca	FvH4_5g00850 FvH4_5g00850 FvH4_5g00850
malus_domestica	MD04G1077600.v1.1 MD06G1063900.v1.1
prunus_persica	Prupe.5G081300_v2.0.a1 Prupe.5G081300_v2.0.a1
pyrus_communis	pycom04g06920 pycom06g06400
rosa_chinensis	RchiOBHm_Chr7g0201061
rosa_laevigata	RLG00000003694
rosa_multiflora	Rmu_sc0006553.1_g000015
rosa_roxburghii	Rroxscaffold_3G00255550
rosa_rugosa	Rorug07G0061700 Rorug07G0061800
rosa_samantha	Rh7AG187600 Rh7BG191100 Rh7CG198600 Rh7DG193300
rosa_wichuraiana	Rw7G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	683, 932
AciI	CCGC	2 cut(s)	578, 893
AclWI	GGATC	3 cut(s)	225, 575, 588
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	3 cut(s)	12, 261, 410
AfaI	GTAC	2 cut(s)	959, 1153
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	8 cut(s)	109, 191, 314, 423, 446, 530, 850, 901
AjnI	CCWGG	2 cut(s)	337, 1016
AjuI	GAANNNNNNNTTGG	2 cut(s)	426, 458
AleI	CACNNNNGTG	1 cut(s)	242
AluBI	AGCT	6 cut(s)	26, 317, 398, 1136, 1160, 1177
AluI	AGCT	6 cut(s)	26, 317, 398, 1136, 1160, 1177
Alw21I	GWGCWC	1 cut(s)	991
Alw26I	GTCTC	2 cut(s)	232, 557
AlwI	GGATC	3 cut(s)	225, 575, 588
AlwNI	CAGNNNCTG	1 cut(s)	470
AoxI	GGCC	4 cut(s)	15, 168, 198, 853
ApeKI	GCWGC	3 cut(s)	482, 503, 1133
ApoI	RAATTY	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	441
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	6 cut(s)	25, 69, 169, 509, 1104, 1117
BaeGI	GKGCMC	1 cut(s)	688
BaeI	ACNNNNGTAYC	2 cut(s)	667, 700
BalI	TGGCCA	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	580
BanI	GGYRCC	2 cut(s)	683, 932
Bbv12I	GWGCWC	1 cut(s)	991
BbvCI	CCTCAGC	1 cut(s)	1101
BbvI	GCAGC	3 cut(s)	469, 515, 1145
BccI	CCATC	5 cut(s)	7, 26, 88, 134, 799
BcgI	CGANNNNNNTGC	2 cut(s)	922, 956
BciT130I	CCWGG	2 cut(s)	339, 1018
BciVI	GTATCC	1 cut(s)	668
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	2 cut(s)	232, 557
BfaI	CTAG	3 cut(s)	795, 857, 1001
BfmI	CTRYAG	1 cut(s)	1155
BfuI	GTATCC	1 cut(s)	668
BisI	GCNGC	4 cut(s)	483, 504, 894, 1134
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	4 cut(s)	484, 505, 895, 1135
Bme1390I	CCNGG	3 cut(s)	339, 454, 1018
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	4 cut(s)	280, 582, 685, 934
BmrFI	CCNGG	3 cut(s)	339, 454, 1018
BmsI	GCATC	2 cut(s)	490, 523
BpmI	CTGGAG	2 cut(s)	396, 627
Bpu10I	CCTNAGC	1 cut(s)	1101
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	899
BpuMI	CCSGG	1 cut(s)	454
Bsa29I	ATCGAT	1 cut(s)	741
BsaBI	GATNNNNATC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	557
BsaJI	CCNNGG	3 cut(s)	195, 213, 825
BsaXI	ACNNNNNCTCC	2 cut(s)	1076, 1106
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	282
Bse3DI	GCAATG	2 cut(s)	353, 543
Bse8I	GATNNNNATC	1 cut(s)	17
BseBI	CCWGG	2 cut(s)	339, 1018
BseCI	ATCGAT	1 cut(s)	741
BseDI	CCNNGG	3 cut(s)	195, 213, 825
BseGI	GGATG	3 cut(s)	86, 352, 1125
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMI	GCAATG	2 cut(s)	353, 543
BseMII	CTCAG	5 cut(s)	405, 682, 876, 1092, 1175
BseNI	ACTGG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	688
BseXI	GCAGC	3 cut(s)	469, 515, 1145
BseYI	CCCAGC	1 cut(s)	1129
BshFI	GGCC	4 cut(s)	17, 170, 200, 855
BshNI	GGYRCC	2 cut(s)	683, 932
BshVI	ATCGAT	1 cut(s)	741
BsiHKAI	GWGCWC	1 cut(s)	991
BsiSI	CCGG	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	2 cut(s)	232, 557
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	4 cut(s)	17, 170, 200, 855
Bso31I	GGTCTC	1 cut(s)	557
Bsp1286I	GDGCHC	2 cut(s)	688, 991
Bsp143I	GATC	6 cut(s)	217, 259, 580, 709, 738, 749
Bsp1720I	GCTNAGC	1 cut(s)	366
BspACI	CCGC	2 cut(s)	578, 893
BspANI	GGCC	4 cut(s)	17, 170, 200, 855
BspCNI	CTCAG	5 cut(s)	406, 681, 877, 1093, 1174
BspDI	ATCGAT	1 cut(s)	741
BspLI	GGNNCC	4 cut(s)	280, 582, 685, 934
BspPI	GGATC	3 cut(s)	225, 575, 588
BspT107I	GGYRCC	2 cut(s)	683, 932
BspTNI	GGTCTC	1 cut(s)	557
BsrDI	GCAATG	2 cut(s)	353, 543
BsrI	ACTGG	1 cut(s)	282
BssECI	CCNNGG	3 cut(s)	195, 213, 825
BssMI	GATC	6 cut(s)	217, 259, 580, 709, 738, 749
BssT1I	CCWWGG	3 cut(s)	195, 213, 825
Bst2UI	CCWGG	2 cut(s)	339, 1018
Bst4CI	ACNGT	2 cut(s)	559, 1116
Bst6I	CTCTTC	3 cut(s)	60, 179, 235
BstC8I	GCNNGC	2 cut(s)	372, 775
BstDEI	CTNAG	6 cut(s)	366, 414, 668, 885, 1101, 1161
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	3 cut(s)	86, 352, 1125
BstKTI	GATC	6 cut(s)	220, 262, 583, 712, 741, 752
BstMAI	GTCTC	2 cut(s)	232, 557
BstMBI	GATC	6 cut(s)	217, 259, 580, 709, 738, 749
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 371, 404, 437, 602, 783, 890
BstNI	CCWGG	2 cut(s)	339, 1018
BstSCI	CCNGG	3 cut(s)	337, 452, 1016
BstSFI	CTRYAG	1 cut(s)	1155
BstSLI	GKGCMC	1 cut(s)	688
BstV1I	GCAGC	3 cut(s)	469, 515, 1145
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
Bsu15I	ATCGAT	1 cut(s)	741
BsuI	GTATCC	1 cut(s)	668
BsuRI	GGCC	4 cut(s)	17, 170, 200, 855
BsuTUI	ATCGAT	1 cut(s)	741
BtsCI	GGATG	3 cut(s)	86, 352, 1125
BtsI	GCAGTG	2 cut(s)	12, 336
BtsIMutI	CAGTG	5 cut(s)	12, 237, 289, 336, 386
Cac8I	GCNNGC	2 cut(s)	372, 775
CaiI	CAGNNNCTG	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	169
ClaI	ATCGAT	1 cut(s)	741
Csp6I	GTAC	2 cut(s)	958, 1152
CviAII	CATG	1 cut(s)	343
CviQI	GTAC	2 cut(s)	958, 1152
DdeI	CTNAG	6 cut(s)	366, 414, 668, 885, 1101, 1161
DpnI	GATC	6 cut(s)	219, 261, 582, 711, 740, 751
DpnII	GATC	6 cut(s)	217, 259, 580, 709, 738, 749
DraI	TTTAAA	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	3 cut(s)	60, 179, 235
EarI	CTCTTC	3 cut(s)	60, 179, 235
Eco130I	CCWWGG	3 cut(s)	195, 213, 825
Eco147I	AGGCCT	2 cut(s)	200, 855
Eco31I	GGTCTC	1 cut(s)	557
Eco32I	GATATC	1 cut(s)	1110
Eco57I	CTGAAG	3 cut(s)	12, 261, 410
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	337, 1016
EcoRV	GATATC	1 cut(s)	1110
EcoT14I	CCWWGG	3 cut(s)	195, 213, 825
ErhI	CCWWGG	3 cut(s)	195, 213, 825
FaeI	CATG	1 cut(s)	346
FaiI	YATR	4 cut(s)	48, 344, 625, 1084
FatI	CATG	1 cut(s)	342
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	4 cut(s)	483, 504, 894, 1134
FokI	GGATG	3 cut(s)	73, 359, 1112
Fsp4HI	GCNGC	4 cut(s)	483, 504, 894, 1134
FspBI	CTAG	3 cut(s)	795, 857, 1001
GluI	GCNGC	4 cut(s)	483, 504, 894, 1134
GsaI	CCCAGC	1 cut(s)	1133
GsuI	CTGGAG	2 cut(s)	396, 627
HaeIII	GGCC	4 cut(s)	17, 170, 200, 855
HapII	CCGG	1 cut(s)	453
Hin1II	CATG	1 cut(s)	346
HincII	GTYRAC	2 cut(s)	295, 925
HindII	GTYRAC	2 cut(s)	295, 925
HindIII	AAGCTT	2 cut(s)	315, 1175
HinfI	GANTC	5 cut(s)	953, 965, 1063, 1079, 1122
HpaI	GTTAAC	2 cut(s)	295, 925
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	6 cut(s)	25, 69, 169, 509, 1104, 1117
Hpy166II	GTNNAC	3 cut(s)	295, 475, 925
Hpy188I	TCNGA	9 cut(s)	23, 122, 415, 671, 738, 754, 863, 964, 1186
Hpy188III	TCNNGA	6 cut(s)	311, 530, 562, 916, 1041, 1119
Hpy8I	GTNNAC	3 cut(s)	295, 475, 925
HpyAV	CCTTC	6 cut(s)	75, 84, 641, 743, 751, 797
HpyCH4III	ACNGT	2 cut(s)	559, 1116
HpyCH4IV	ACGT	1 cut(s)	1144
HpyCH4V	TGCA	4 cut(s)	329, 407, 485, 503
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 371, 404, 437, 602, 783, 890
HpyF3I	CTNAG	6 cut(s)	366, 414, 668, 885, 1101, 1161
HpySE526I	ACGT	1 cut(s)	1144
Hsp92II	CATG	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	259
KspAI	GTTAAC	2 cut(s)	295, 925
Kzo9I	GATC	6 cut(s)	217, 259, 580, 709, 738, 749
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	3 cut(s)	469, 515, 1145
LweI	GCATC	2 cut(s)	490, 523
MaeI	CTAG	3 cut(s)	795, 857, 1001
MaeII	ACGT	1 cut(s)	1144
MaeIII	GTNAC	2 cut(s)	31, 1056
MalI	GATC	6 cut(s)	219, 261, 582, 711, 740, 751
MboI	GATC	6 cut(s)	217, 259, 580, 709, 738, 749
MboII	GAAGA	9 cut(s)	47, 60, 166, 222, 403, 626, 736, 842, 883
MfeI	CAATTG	2 cut(s)	255, 360
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	2 cut(s)	688, 991
MlsI	TGGCCA	1 cut(s)	17
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	2 cut(s)	947, 1072
Mox20I	TGGCCA	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	441
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	5 cut(s)	294, 323, 663, 924, 1008
MslI	CAYNNNNRTG	2 cut(s)	242, 347
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	3 cut(s)	339, 454, 1018
MunI	CAATTG	2 cut(s)	255, 360
Mva1269I	GAATGC	1 cut(s)	777
MvaI	CCWGG	2 cut(s)	339, 1018
MwoI	GCNNNNNNNGC	7 cut(s)	23, 371, 404, 437, 602, 783, 890
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	6 cut(s)	217, 259, 580, 709, 738, 749
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	4 cut(s)	280, 582, 685, 934
NmuCI	GTSAC	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	242
PceI	AGGCCT	2 cut(s)	200, 855
PctI	GAATGC	1 cut(s)	777
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	3 cut(s)	965, 1079, 1122
PfoI	TCCNGGA	1 cut(s)	452
PkrI	GCNGC	4 cut(s)	484, 505, 895, 1135
PleI	GAGTC	2 cut(s)	947, 1071
PpsI	GAGTC	2 cut(s)	947, 1071
Psp6I	CCWGG	2 cut(s)	337, 1016
PspFI	CCCAGC	1 cut(s)	1129
PspGI	CCWGG	2 cut(s)	337, 1016
PspN4I	GGNNCC	4 cut(s)	280, 582, 685, 934
PspPI	GGNCC	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	580
RsaI	GTAC	2 cut(s)	959, 1153
RsaNI	GTAC	2 cut(s)	958, 1152
RseI	CAYNNNNRTG	2 cut(s)	242, 347
SaqAI	TTAA	5 cut(s)	294, 323, 663, 924, 1008
SatI	GCNGC	4 cut(s)	483, 504, 894, 1134
Sau3AI	GATC	6 cut(s)	217, 259, 580, 709, 738, 749
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	2 cut(s)	947, 1072
ScrFI	CCNGG	3 cut(s)	339, 454, 1018
SduI	GDGCHC	2 cut(s)	688, 991
SfaNI	GCATC	2 cut(s)	490, 523
SfcI	CTRYAG	1 cut(s)	1155
SmiMI	CAYNNNNRTG	2 cut(s)	242, 347
SmlI	CTYRAG	1 cut(s)	914
SmoI	CTYRAG	1 cut(s)	914
SseBI	AGGCCT	2 cut(s)	200, 855
SsiI	CCGC	2 cut(s)	578, 893
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	3 cut(s)	795, 857, 1001
StuI	AGGCCT	2 cut(s)	200, 855
StyD4I	CCNGG	3 cut(s)	337, 452, 1016
StyI	CCWWGG	3 cut(s)	195, 213, 825
TaaI	ACNGT	2 cut(s)	559, 1116
TaiI	ACGT	1 cut(s)	1147
TaqI	TCGA	4 cut(s)	561, 741, 748, 1171
TauI	GCSGC	1 cut(s)	896
TfiI	GAWTC	3 cut(s)	965, 1079, 1122
Tru1I	TTAA	5 cut(s)	294, 323, 663, 924, 1008
Tru9I	TTAA	5 cut(s)	294, 323, 663, 924, 1008
TscAI	CASTG	5 cut(s)	12, 244, 289, 336, 393
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	3 cut(s)	482, 503, 1133
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	540, 561, 1071
TspRI	CASTG	5 cut(s)	12, 244, 289, 336, 393
XagI	CCTNNNNNAGG	1 cut(s)	212
XapI	RAATTY	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	3 cut(s)	795, 857, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.