Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010311

Physical Location & Seq

Genomic Coordinates Forward (+)

51719989 .. 51723234

Gene Structure 3246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003694

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCAGTCTCTTTTGCCACAACGACGTTCACTCCAAGCCTTCAGGCCCAAGCTAGACTCTCTTACCCTCCTCCCAGTTGCTCAATCAAGCATTTTTCTGGGTTAAAGCGTGAATCTTTAGGTACTTTTGGAGCTAAAAATCCCAACTTGACGGTTGAGTTCTATGCCAAAGTTAGTAAGAGCCTTCTGCCCAGGACAGGAAACCACAGATCATCGCGTGCACAAGTTCGAATGATGCCAATAGGGACACCAAAGGTTCCCTATCGAACCCCTGGTGAGGGAGGTTGGCAATGGGTTGATCTGTGGAATGCTCTATACCGGGAACGTGTTATCTTCATTGGGCAAAATATAGATGAAGAGTTTAGCAATCAAATTCTCGCAACAATGCTGTACCTTGACACAATTGATTCGTCCAAAAGGCTTTATATGTATATCAATGGTCCTGGTGGAGATCTTACTCCGAGCATGGCTATCTATGATACTATGCAAAGCTTAAAGAGTCCTGTTGGCACCCACTGTGTGGGCTATGCATATAATTTGGCAGCCTTTCTTCTTGCAGCTGGAGAAAAGGGTAATCGATTTGCAATGCCACTATCAAGAATTGCACTGCAGTCTCCTGCTGGGGCTGCTCGTGGTCAGGCTGATGACATACGCAATGAGGCAAATGAGCTTCTCAGAATCAGAGATTACCTTTTTAATGAGTTGGCAGAGAAAACTGGCCAGCCAATTGAAAAGATTAACAAAGACCTAAGTCGGATGAAGCGCTTTAATGCACAGGAAGCTCTTGAGTATGGGCTCATTGATCGTGTAGTTAGGCCACCTCGTATCAAGGCCGACTCACCTAGCAAAGATGCGGGAACAGGTCTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009840 GO:0009941 GO:0009987 GO:0010287 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

291

Amino Acids

32.14

Weight (kDa)

9.49

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	96 - 272	9.3e-65	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12410
fragaria_vesca	FvH4_5g00850 FvH4_5g00850 FvH4_5g00850
malus_domestica	MD04G1077600.v1.1 MD06G1063900.v1.1
prunus_persica	Prupe.5G081300_v2.0.a1 Prupe.5G081300_v2.0.a1
pyrus_communis	pycom04g06920 pycom06g06400
rosa_chinensis	RchiOBHm_Chr7g0201061
rosa_laevigata	RLG00000003694
rosa_multiflora	Rmu_sc0006553.1_g000015
rosa_roxburghii	Rroxscaffold_3G00255550
rosa_rugosa	Rorug07G0061700 Rorug07G0061800
rosa_samantha	Rh7AG187600 Rh7BG191100 Rh7CG198600 Rh7DG193300
rosa_wichuraiana	Rw7G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	509
AccB7I	CCANNNNNTGG	1 cut(s)	520
AccII	CGCG	1 cut(s)	217
AciI	CCGC	1 cut(s)	854
AcoI	YGGCCR	1 cut(s)	718
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	26
AdeI	CACNNNGTG	1 cut(s)	520
AfaI	GTAC	2 cut(s)	124, 392
AfeI	AGCGCT	1 cut(s)	764
AfiI	CCNNNNNNNGG	4 cut(s)	197, 277, 278, 520
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	731
AjnI	CCWGG	3 cut(s)	191, 271, 442
AluBI	AGCT	6 cut(s)	53, 134, 492, 560, 670, 782
AluI	AGCT	6 cut(s)	53, 134, 492, 560, 670, 782
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	2 cut(s)	13, 618
Alw44I	GTGCAC	1 cut(s)	219
Aor51HI	AGCGCT	1 cut(s)	764
AoxI	GGCC	4 cut(s)	45, 718, 815, 831
ApaLI	GTGCAC	1 cut(s)	219
ApeKI	GCWGC	3 cut(s)	542, 557, 626
ApoI	RAATTY	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	765
AspS9I	GGNCC	2 cut(s)	46, 440
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	287, 831
AsuII	TTCGAA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	440
BaeGI	GKGCMC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	720
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	798
BauI	CACGAG	1 cut(s)	630
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	3 cut(s)	554, 569, 613
BciT130I	CCWGG	3 cut(s)	193, 273, 444
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	2 cut(s)	13, 618
BfaI	CTAG	2 cut(s)	54, 843
BfmI	CTRYAG	1 cut(s)	608
BfoI	RGCGCY	1 cut(s)	766
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	3 cut(s)	543, 558, 627
BlsI	GCNGC	3 cut(s)	544, 559, 628
Bme1390I	CCNGG	4 cut(s)	193, 273, 320, 444
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	46, 440
BmiI	GGNNCC	2 cut(s)	258, 511
BmrFI	CCNGG	4 cut(s)	193, 273, 320, 444
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	2 cut(s)	225, 841
BmuI	ACTGGG	1 cut(s)	69
BoxI	GACNNNNGTC	1 cut(s)	750
BpmI	CTGGAG	1 cut(s)	582
Bpu14I	TTCGAA	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	806
BpuMI	CCSGG	1 cut(s)	320
Bsa29I	ATCGAT	1 cut(s)	577
BsaJI	CCNNGG	2 cut(s)	191, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	4 cut(s)	197, 277, 278, 520
Bse1I	ACTGG	2 cut(s)	75, 721
Bse3DI	GCAATG	3 cut(s)	296, 591, 661
BseBI	CCWGG	3 cut(s)	193, 273, 444
BseCI	ATCGAT	1 cut(s)	577
BseDI	CCNNGG	2 cut(s)	191, 271
BseGI	GGATG	1 cut(s)	762
BseLI	CCNNNNNNNGG	4 cut(s)	197, 277, 278, 520
BseMI	GCAATG	3 cut(s)	296, 591, 661
BseMII	CTCAG	1 cut(s)	688
BseNI	ACTGG	2 cut(s)	75, 721
BseRI	GAGGAG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	3 cut(s)	554, 569, 613
BseYI	CCCAGC	1 cut(s)	620
Bsh1236I	CGCG	1 cut(s)	217
BshFI	GGCC	4 cut(s)	47, 720, 817, 833
BshNI	GGYRCC	1 cut(s)	509
BshVI	ATCGAT	1 cut(s)	577
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	319
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	4 cut(s)	197, 277, 278, 520
BsmAI	GTCTC	2 cut(s)	13, 618
BsmFI	GGGAC	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	4 cut(s)	47, 720, 817, 833
Bsp119I	TTCGAA	1 cut(s)	229
Bsp1286I	GDGCHC	2 cut(s)	223, 798
Bsp143I	GATC	4 cut(s)	209, 298, 451, 802
BspACI	CCGC	1 cut(s)	854
BspANI	GGCC	4 cut(s)	47, 720, 817, 833
BspCNI	CTCAG	1 cut(s)	687
BspDI	ATCGAT	1 cut(s)	577
BspFNI	CGCG	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	258, 511
BspMAI	CTGCAG	1 cut(s)	612
BspT104I	TTCGAA	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	3 cut(s)	296, 591, 661
BsrI	ACTGG	2 cut(s)	75, 721
BssECI	CCNNGG	2 cut(s)	191, 271
BssMI	GATC	4 cut(s)	209, 298, 451, 802
BssSI	CACGAG	1 cut(s)	630
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	3 cut(s)	193, 273, 444
Bst4CI	ACNGT	2 cut(s)	154, 518
Bst6I	CTCTTC	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	219, 722
BstDEI	CTNAG	2 cut(s)	674, 749
BstF5I	GGATG	1 cut(s)	762
BstFNI	CGCG	1 cut(s)	217
BstH2I	RGCGCY	1 cut(s)	766
BstHHI	GCGC	1 cut(s)	765
BstKTI	GATC	4 cut(s)	212, 301, 454, 805
BstMAI	GTCTC	2 cut(s)	13, 618
BstMBI	GATC	4 cut(s)	209, 298, 451, 802
BstMWI	GCNNNNNNNGC	2 cut(s)	626, 779
BstNI	CCWGG	3 cut(s)	193, 273, 444
BstPAI	GACNNNNGTC	1 cut(s)	750
BstSCI	CCNGG	4 cut(s)	191, 271, 318, 442
BstSFI	CTRYAG	1 cut(s)	608
BstSLI	GKGCMC	1 cut(s)	223
BstUI	CGCG	1 cut(s)	217
BstV1I	GCAGC	3 cut(s)	554, 569, 613
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
Bsu15I	ATCGAT	1 cut(s)	577
BsuRI	GGCC	4 cut(s)	47, 720, 817, 833
BsuTUI	ATCGAT	1 cut(s)	577
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	762
BtsI	GCAGTG	1 cut(s)	605
BtsIMutI	CAGTG	2 cut(s)	514, 605
Cac8I	GCNNGC	2 cut(s)	219, 722
CfoI	GCGC	1 cut(s)	765
Cfr13I	GGNCC	2 cut(s)	46, 440
ClaI	ATCGAT	1 cut(s)	577
Csp6I	GTAC	2 cut(s)	123, 391
CviAII	CATG	1 cut(s)	466
CviQI	GTAC	2 cut(s)	123, 391
DdeI	CTNAG	2 cut(s)	674, 749
DpnI	GATC	4 cut(s)	211, 300, 453, 804
DpnII	GATC	4 cut(s)	209, 298, 451, 802
DraIII	CACNNNGTG	1 cut(s)	520
EaeI	YGGCCR	1 cut(s)	718
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	798
Eco47I	GGWCC	1 cut(s)	440
Eco47III	AGCGCT	1 cut(s)	764
Eco57I	CTGAAG	1 cut(s)	26
EcoRII	CCWGG	3 cut(s)	191, 271, 442
EcoT22I	ATGCAT	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	798
FaeI	CATG	1 cut(s)	469
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	1 cut(s)	465
FauI	CCCGC	1 cut(s)	847
Fnu4HI	GCNGC	3 cut(s)	543, 558, 627
FokI	GGATG	1 cut(s)	769
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	3 cut(s)	543, 558, 627
FspBI	CTAG	2 cut(s)	54, 843
GlaI	GCGC	1 cut(s)	764
GluI	GCNGC	3 cut(s)	543, 558, 627
GsaI	CCCAGC	1 cut(s)	624
GsuI	CTGGAG	1 cut(s)	582
HaeII	RGCGCY	1 cut(s)	766
HaeIII	GGCC	4 cut(s)	47, 720, 817, 833
HapII	CCGG	1 cut(s)	319
HhaI	GCGC	1 cut(s)	765
Hin1II	CATG	1 cut(s)	469
Hin6I	GCGC	1 cut(s)	763
HinP1I	GCGC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	490
HinfI	GANTC	6 cut(s)	57, 113, 407, 499, 678, 836
HpaII	CCGG	1 cut(s)	319
HphI	GGTGA	2 cut(s)	287, 831
Hpy166II	GTNNAC	2 cut(s)	30, 221
Hpy188I	TCNGA	4 cut(s)	462, 677, 683, 756
Hpy188III	TCNNGA	2 cut(s)	597, 785
Hpy8I	GTNNAC	2 cut(s)	30, 221
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	50, 194
HpyCH4III	ACNGT	2 cut(s)	154, 518
HpyCH4IV	ACGT	2 cut(s)	26, 325
HpyCH4V	TGCA	8 cut(s)	221, 487, 530, 557, 584, 605, 610, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	626, 779
HpyF3I	CTNAG	2 cut(s)	674, 749
HpySE526I	ACGT	2 cut(s)	26, 325
Hsp92II	CATG	1 cut(s)	469
HspAI	GCGC	1 cut(s)	763
Kzo9I	GATC	4 cut(s)	209, 298, 451, 802
LmnI	GCTCC	1 cut(s)	131
Lsp1109I	GCAGC	3 cut(s)	554, 569, 613
LweI	GCATC	2 cut(s)	225, 841
MaeI	CTAG	2 cut(s)	54, 843
MaeII	ACGT	2 cut(s)	26, 325
MalI	GATC	4 cut(s)	211, 300, 453, 804
MboI	GATC	4 cut(s)	209, 298, 451, 802
MboII	GAAGA	3 cut(s)	325, 368, 542
MfeI	CAATTG	2 cut(s)	402, 726
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	2 cut(s)	223, 798
MlsI	TGGCCA	1 cut(s)	720
MluCI	AATT	5 cut(s)	372, 402, 535, 600, 726
MluNI	TGGCCA	1 cut(s)	720
MlyI	GAGTC	3 cut(s)	51, 508, 830
MmeI	TCCRAC	1 cut(s)	734
MnlI	CCTC	6 cut(s)	78, 81, 271, 275, 652, 831
Mox20I	TGGCCA	1 cut(s)	720
Mph1103I	ATGCAT	1 cut(s)	532
MscI	TGGCCA	1 cut(s)	720
MseI	TTAA	5 cut(s)	104, 494, 696, 738, 768
Msp20I	TGGCCA	1 cut(s)	720
MspA1I	CMGCKG	1 cut(s)	560
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	4 cut(s)	193, 273, 320, 444
MunI	CAATTG	2 cut(s)	402, 726
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	3 cut(s)	193, 273, 444
MvnI	CGCG	1 cut(s)	217
MwoI	GCNNNNNNNGC	2 cut(s)	626, 779
NciI	CCSGG	1 cut(s)	320
NdeII	GATC	4 cut(s)	209, 298, 451, 802
NlaIII	CATG	1 cut(s)	469
NlaIV	GGNNCC	2 cut(s)	258, 511
NsiI	ATGCAT	1 cut(s)	532
NspV	TTCGAA	1 cut(s)	229
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	3 cut(s)	113, 407, 678
PflMI	CCANNNNNTGG	1 cut(s)	520
PkrI	GCNGC	3 cut(s)	544, 559, 628
PleI	GAGTC	3 cut(s)	51, 507, 830
PpsI	GAGTC	3 cut(s)	51, 507, 830
PshAI	GACNNNNGTC	1 cut(s)	750
Psp6I	CCWGG	3 cut(s)	191, 271, 442
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	3 cut(s)	191, 271, 442
PspN4I	GGNNCC	2 cut(s)	258, 511
PspPI	GGNCC	2 cut(s)	46, 440
PstI	CTGCAG	1 cut(s)	612
PsuI	RGATCY	1 cut(s)	451
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	2 cut(s)	124, 392
RsaNI	GTAC	2 cut(s)	123, 391
SaqAI	TTAA	5 cut(s)	104, 494, 696, 738, 768
SatI	GCNGC	3 cut(s)	543, 558, 627
Sau3AI	GATC	4 cut(s)	209, 298, 451, 802
Sau96I	GGNCC	2 cut(s)	46, 440
SchI	GAGTC	3 cut(s)	51, 508, 830
ScrFI	CCNGG	4 cut(s)	193, 273, 320, 444
SduI	GDGCHC	2 cut(s)	223, 798
SfaNI	GCATC	2 cut(s)	225, 841
SfcI	CTRYAG	1 cut(s)	608
SfuI	TTCGAA	1 cut(s)	229
SinI	GGWCC	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
Sse9I	AATT	5 cut(s)	372, 402, 535, 600, 726
SsiI	CCGC	1 cut(s)	854
SspMI	CTAG	2 cut(s)	54, 843
StyD4I	CCNGG	4 cut(s)	191, 271, 318, 442
TaaI	ACNGT	2 cut(s)	154, 518
TaiI	ACGT	2 cut(s)	29, 328
TaqI	TCGA	3 cut(s)	229, 265, 577
TasI	AATT	5 cut(s)	372, 402, 535, 600, 726
TfiI	GAWTC	3 cut(s)	113, 407, 678
Tru1I	TTAA	5 cut(s)	104, 494, 696, 738, 768
Tru9I	TTAA	5 cut(s)	104, 494, 696, 738, 768
TscAI	CASTG	2 cut(s)	521, 612
TseI	GCWGC	3 cut(s)	542, 557, 626
TspDTI	ATGAA	3 cut(s)	325, 369, 773
TspRI	CASTG	2 cut(s)	521, 612
Van91I	CCANNNNNTGG	1 cut(s)	520
VneI	GTGCAC	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	1 cut(s)	372
XspI	CTAG	2 cut(s)	54, 843
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.