Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006553.1

Orthogroup ID

OG0010311

Physical Location & Seq

Genomic Coordinates Reverse (-)

108926 .. 115301

Gene Structure 6376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006553.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggtgaatgctactaaaggattgtttatctcttgtgacatacctatggcgcaattcatcatcaattacaacaattcactgcctccatcacaaaagttcataatacacgtcttggatggcactcacttgtttgtgcaacagcatgcagctgagatgataagaataatacggtctgttggtatcaacaccaagtcagtctcttttgccacaacgacgtacactccaagccttcaggcccaagctagactctctcaccctcctcccagttgctcaatcaagcatttttctgggttaaagcctgaatctttaggtacttttggagctaaaaatcccaacttgacggttgagttctatggcaaagttagtaagagccttctgcccaggacaggaaaccacagatcatcgcgtgcacaagttcaaatgatgccaatagggacaccaaaggttccctatcgaacccctggtgagggaggttggcaatgggttgatctgtggaatgctctgattcgtctgtgtcttcccagccaatttcatcatcgctaccattgtcatcatcatcttcgagagaaaactggccagccaattgaaaagattaacaaagacctaagtcggatgaagcgctttaatgcacaggaagctcttgagtatgggctcattgatcgtgtagttaggccgcctcgtattaaggctgactcacctagcaaagatgcgggaacaggtcttggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009840 GO:0009941 GO:0009987 GO:0010287 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

242

Amino Acids

27.11

Weight (kDa)

9.98

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12410
fragaria_vesca	FvH4_5g00850 FvH4_5g00850 FvH4_5g00850
malus_domestica	MD04G1077600.v1.1 MD06G1063900.v1.1
prunus_persica	Prupe.5G081300_v2.0.a1 Prupe.5G081300_v2.0.a1
pyrus_communis	pycom04g06920 pycom06g06400
rosa_chinensis	RchiOBHm_Chr7g0201061
rosa_laevigata	RLG00000003694
rosa_multiflora	Rmu_sc0006553.1_g000015
rosa_roxburghii	Rroxscaffold_3G00255550
rosa_rugosa	Rorug07G0061700 Rorug07G0061800
rosa_samantha	Rh7AG187600 Rh7BG191100 Rh7CG198600 Rh7DG193300
rosa_wichuraiana	Rw7G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	406
AciI	CCGC	2 cut(s)	674, 710
AcoI	YGGCCR	1 cut(s)	574
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	2 cut(s)	218, 313
AfeI	AGCGCT	1 cut(s)	620
AfiI	CCNNNNNNNGG	3 cut(s)	386, 466, 467
AflIII	ACRYGT	1 cut(s)	106
AgsI	TTSAA	2 cut(s)	419, 587
AjiI	CACGTC	1 cut(s)	109
AjnI	CCWGG	2 cut(s)	380, 460
AluBI	AGCT	4 cut(s)	149, 242, 323, 638
AluI	AGCT	4 cut(s)	149, 242, 323, 638
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	1 cut(s)	202
Alw44I	GTGCAC	1 cut(s)	408
Aor51HI	AGCGCT	1 cut(s)	620
AoxI	GGCC	3 cut(s)	234, 574, 671
ApaLI	GTGCAC	1 cut(s)	408
ApeKI	GCWGC	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	52, 621
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	4 cut(s)	16, 245, 476, 687
BaeGI	GKGCMC	1 cut(s)	412
BalI	TGGCCA	1 cut(s)	576
BanII	GRGCYC	1 cut(s)	654
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	2 cut(s)	94, 110
BciT130I	CCWGG	2 cut(s)	382, 462
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	2 cut(s)	243, 699
BfoI	RGCGCY	1 cut(s)	622
BisI	GCNGC	2 cut(s)	147, 674
BlsI	GCNGC	2 cut(s)	148, 675
Bme1390I	CCNGG	2 cut(s)	382, 462
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	382, 462
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	2 cut(s)	414, 697
BmuI	ACTGGG	1 cut(s)	258
BoxI	GACNNNNGTC	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	509
BpuEI	CTTGAG	1 cut(s)	662
BsaJI	CCNNGG	2 cut(s)	380, 460
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	3 cut(s)	386, 466, 467
Bse1I	ACTGG	2 cut(s)	264, 577
Bse3DI	GCAATG	1 cut(s)	485
BseBI	CCWGG	2 cut(s)	382, 462
BseDI	CCNNGG	2 cut(s)	380, 460
BseGI	GGATG	2 cut(s)	121, 618
BseLI	CCNNNNNNNGG	3 cut(s)	386, 466, 467
BseMI	GCAATG	1 cut(s)	485
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	264, 577
BseRI	GAGGAG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	158
BseYI	CCCAGC	1 cut(s)	521
Bsh1236I	CGCG	1 cut(s)	406
BshFI	GGCC	3 cut(s)	236, 576, 673
BsiHKAI	GWGCWC	1 cut(s)	412
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	3 cut(s)	386, 466, 467
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	448
BsmI	GAATGC	2 cut(s)	13, 502
BsnI	GGCC	3 cut(s)	236, 576, 673
Bsp1286I	GDGCHC	2 cut(s)	412, 654
Bsp143I	GATC	3 cut(s)	398, 487, 658
BspACI	CCGC	2 cut(s)	674, 710
BspANI	GGCC	3 cut(s)	236, 576, 673
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	406
BspLI	GGNNCC	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	485
BsrI	ACTGG	2 cut(s)	264, 577
BssECI	CCNNGG	2 cut(s)	380, 460
BssMI	GATC	3 cut(s)	398, 487, 658
Bst2UI	CCWGG	2 cut(s)	382, 462
Bst4CI	ACNGT	2 cut(s)	171, 343
BstC8I	GCNNGC	3 cut(s)	144, 408, 578
BstDEI	CTNAG	2 cut(s)	150, 605
BstF5I	GGATG	2 cut(s)	121, 618
BstFNI	CGCG	1 cut(s)	406
BstH2I	RGCGCY	1 cut(s)	622
BstHHI	GCGC	2 cut(s)	52, 621
BstKTI	GATC	3 cut(s)	401, 490, 661
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	3 cut(s)	398, 487, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	635
BstNI	CCWGG	2 cut(s)	382, 462
BstNSI	RCATGY	1 cut(s)	146
BstPAI	GACNNNNGTC	1 cut(s)	606
BstSCI	CCNGG	2 cut(s)	380, 460
BstSLI	GKGCMC	1 cut(s)	412
BstUI	CGCG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	158
BstV2I	GAAGAC	1 cut(s)	509
BsuRI	GGCC	3 cut(s)	236, 576, 673
BtgZI	GCGATG	2 cut(s)	387, 521
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	121, 618
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	3 cut(s)	144, 408, 578
CfoI	GCGC	2 cut(s)	52, 621
Cfr13I	GGNCC	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	217, 312
CviAII	CATG	1 cut(s)	143
CviQI	GTAC	2 cut(s)	217, 312
DdeI	CTNAG	2 cut(s)	150, 605
DpnI	GATC	3 cut(s)	400, 489, 660
DpnII	GATC	3 cut(s)	398, 487, 658
EaeI	YGGCCR	1 cut(s)	574
Eco24I	GRGCYC	1 cut(s)	654
Eco47III	AGCGCT	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	380, 460
EcoT38I	GRGCYC	1 cut(s)	654
FaeI	CATG	1 cut(s)	146
FaiI	YATR	6 cut(s)	41, 47, 101, 144, 354, 648
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	1 cut(s)	142
FauI	CCCGC	1 cut(s)	703
Fnu4HI	GCNGC	2 cut(s)	147, 674
FokI	GGATG	2 cut(s)	128, 625
FriOI	GRGCYC	1 cut(s)	654
Fsp4HI	GCNGC	2 cut(s)	147, 674
FspBI	CTAG	2 cut(s)	243, 699
GlaI	GCGC	2 cut(s)	51, 620
GluI	GCNGC	2 cut(s)	147, 674
GsaI	CCCAGC	1 cut(s)	525
HaeII	RGCGCY	1 cut(s)	622
HaeIII	GGCC	3 cut(s)	236, 576, 673
HhaI	GCGC	2 cut(s)	52, 621
Hin1II	CATG	1 cut(s)	146
Hin6I	GCGC	2 cut(s)	50, 619
HinP1I	GCGC	2 cut(s)	50, 619
HinfI	GANTC	4 cut(s)	246, 302, 505, 692
HphI	GGTGA	4 cut(s)	16, 245, 476, 687
Hpy166II	GTNNAC	2 cut(s)	219, 410
Hpy188I	TCNGA	2 cut(s)	504, 612
Hpy188III	TCNNGA	2 cut(s)	563, 641
Hpy8I	GTNNAC	2 cut(s)	219, 410
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	2 cut(s)	239, 383
HpyCH4III	ACNGT	2 cut(s)	171, 343
HpyCH4IV	ACGT	2 cut(s)	108, 215
HpyCH4V	TGCA	4 cut(s)	136, 146, 410, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	635
HpyF3I	CTNAG	2 cut(s)	150, 605
HpySE526I	ACGT	2 cut(s)	108, 215
Hsp92II	CATG	1 cut(s)	146
HspAI	GCGC	2 cut(s)	50, 619
Kzo9I	GATC	3 cut(s)	398, 487, 658
LmnI	GCTCC	1 cut(s)	320
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	2 cut(s)	414, 697
MaeI	CTAG	2 cut(s)	243, 699
MaeII	ACGT	2 cut(s)	108, 215
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	3 cut(s)	400, 489, 660
MboI	GATC	3 cut(s)	398, 487, 658
MboII	GAAGA	2 cut(s)	509, 551
MfeI	CAATTG	1 cut(s)	582
MhlI	GDGCHC	2 cut(s)	412, 654
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	5 cut(s)	53, 64, 73, 527, 582
MluNI	TGGCCA	1 cut(s)	576
MlyI	GAGTC	2 cut(s)	240, 686
MmeI	TCCRAC	1 cut(s)	590
MnlI	CCTC	6 cut(s)	93, 267, 270, 460, 464, 687
Mox20I	TGGCCA	1 cut(s)	576
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	4 cut(s)	293, 594, 624, 684
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	576
MspA1I	CMGCKG	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	382, 462
MunI	CAATTG	1 cut(s)	582
Mva1269I	GAATGC	2 cut(s)	13, 502
MvaI	CCWGG	2 cut(s)	382, 462
MvnI	CGCG	1 cut(s)	406
MwoI	GCNNNNNNNGC	1 cut(s)	635
NdeII	GATC	3 cut(s)	398, 487, 658
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	1 cut(s)	35
NspI	RCATGY	1 cut(s)	146
PaeI	GCATGC	1 cut(s)	146
PctI	GAATGC	2 cut(s)	13, 502
PfeI	GAWTC	2 cut(s)	302, 505
PkrI	GCNGC	2 cut(s)	148, 675
PleI	GAGTC	2 cut(s)	240, 686
PpsI	GAGTC	2 cut(s)	240, 686
PshAI	GACNNNNGTC	1 cut(s)	606
Psp6I	CCWGG	2 cut(s)	380, 460
PspFI	CCCAGC	1 cut(s)	521
PspGI	CCWGG	2 cut(s)	380, 460
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	218, 313
RsaNI	GTAC	2 cut(s)	217, 312
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	4 cut(s)	293, 594, 624, 684
SatI	GCNGC	2 cut(s)	147, 674
Sau3AI	GATC	3 cut(s)	398, 487, 658
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	2 cut(s)	240, 686
ScrFI	CCNGG	2 cut(s)	382, 462
SduI	GDGCHC	2 cut(s)	412, 654
SfaNI	GCATC	2 cut(s)	414, 697
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
SphI	GCATGC	1 cut(s)	146
Sse9I	AATT	5 cut(s)	53, 64, 73, 527, 582
SsiI	CCGC	2 cut(s)	674, 710
SspMI	CTAG	2 cut(s)	243, 699
StyD4I	CCNGG	2 cut(s)	380, 460
TaaI	ACNGT	2 cut(s)	171, 343
TaiI	ACGT	2 cut(s)	111, 218
TaqI	TCGA	2 cut(s)	454, 562
TasI	AATT	5 cut(s)	53, 64, 73, 527, 582
TauI	GCSGC	1 cut(s)	676
TfiI	GAWTC	2 cut(s)	302, 505
Tru1I	TTAA	4 cut(s)	293, 594, 624, 684
Tru9I	TTAA	4 cut(s)	293, 594, 624, 684
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	4 cut(s)	46, 88, 521, 629
TspRI	CASTG	1 cut(s)	84
VneI	GTGCAC	1 cut(s)	408
XceI	RCATGY	1 cut(s)	146
XspI	CTAG	2 cut(s)	243, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.