Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010311

Physical Location & Seq

Genomic Coordinates Reverse (-)

7196389 .. 7199159

Gene Structure 2771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g06920.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGATGATGACAAAACCAATCACCCGACCCGTCAAACAAACGACGGTTTGGAAACAAACTAGTGCCGGCTCTAGCGGATCCCTCCCGCCTCAGTCTATTCCCTTCTTCTTCTTCCTCCTATCCCAACCTCCCAAAACTCTCCCTCAGTTGGTGAAAATGGCAGTCTCTTTTCACCCAACCACTTCTTCTCCAGGCCTCCATCGCCAAGCTAGTCTCTCTCTTCCTCCTCCCAGTTGCTCAACAAAACATTATTCAGGATTAAAGCTGCAGTATTTAGGTACTTTTGGAGCTAAAAACCCTAACTTGACGGTTGAGTTATACGGCAAAGTTAATAAGAGCCTTCAGTCCAGGACACGACACCATAGACCATCTCGGGCACAAATTGGAATGATGCCTATAGGGACGCCAAAGGTGCCCTATAGAACTCCTGGTGAGGGAACTTGGCAATGGGTTGATTTGTGGAATGCTCTATATCGAGAACGGGTTATCTTCATTGGGCAGAATATAGATGAAGAGTTTAGCAATCAAATTTTGGCAACAATGTTGTACCTCGACACTATTGATTCTTCCAAAAGGCTTTATATGTATATCAACGGTCCTGGTGGAGATCTTACTCCGAGCATGGCTATATATGATACGATGCAGAGCCTAAAAAGTCCTGTCGGCACCCATTGTGTGGGCTATGCCTATAACTTGGCAGCCTTTCTTCTTGCCGCTGGAGAGAAGGGGAACCGATTTGCAATGCCACTATCAAGAATTGCACTACAGTCTCCTGCCGGGGCTGCTCGTGGCCAGGCCGATGACATACAAAATGAAGCAAATGAACTTCTCAGAATCAGGGATTACCTGTTTAATGAGTTGGCTAAGAAAACAGGGCAGTCAGTTGAAAAGATTAACAAAGACTTAAGTCGGATGAAGCGCTTTAATGCACAGGAAGCTCTTGAATATGGGCTCATTGATTGTGTTGTTAGGCCACCTCGTATCAAGGCTGACGCACCTCTCAAGGACACCGGATCAGGTCTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009840 GO:0009941 GO:0009987 GO:0010287 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

343

Amino Acids

37.9

Weight (kDa)

9.7

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12410
fragaria_vesca	FvH4_5g00850 FvH4_5g00850 FvH4_5g00850
malus_domestica	MD04G1077600.v1.1 MD06G1063900.v1.1
prunus_persica	Prupe.5G081300_v2.0.a1 Prupe.5G081300_v2.0.a1
pyrus_communis	pycom04g06920 pycom06g06400
rosa_chinensis	RchiOBHm_Chr7g0201061
rosa_laevigata	RLG00000003694
rosa_multiflora	Rmu_sc0006553.1_g000015
rosa_roxburghii	Rroxscaffold_3G00255550
rosa_rugosa	Rorug07G0061700 Rorug07G0061800
rosa_samantha	Rh7AG187600 Rh7BG191100 Rh7CG198600 Rh7DG193300
rosa_wichuraiana	Rw7G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	412, 665
AccB7I	CCANNNNNTGG	1 cut(s)	676
AciI	CCGC	3 cut(s)	75, 86, 714
AclWI	GGATC	3 cut(s)	72, 85, 1021
AcoI	YGGCCR	1 cut(s)	790
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	404
AfaI	GTAC	2 cut(s)	280, 548
AfeI	AGCGCT	1 cut(s)	920
AfiI	CCNNNNNNNGG	3 cut(s)	148, 434, 676
AflII	CTTAAG	1 cut(s)	904
AgsI	TTSAA	2 cut(s)	887, 944
AhlI	ACTAGT	1 cut(s)	59
AjnI	CCWGG	5 cut(s)	190, 347, 427, 598, 792
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	4 cut(s)	209, 265, 290, 938
AluI	AGCT	4 cut(s)	209, 265, 290, 938
Alw26I	GTCTC	3 cut(s)	169, 218, 774
AlwI	GGATC	3 cut(s)	72, 85, 1021
Ama87I	CYCGRG	1 cut(s)	372
Aor51HI	AGCGCT	1 cut(s)	920
AoxI	GGCC	4 cut(s)	193, 790, 795, 971
ApeKI	GCWGC	3 cut(s)	265, 698, 782
ApoI	RAATTY	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	921
AspS9I	GGNCC	1 cut(s)	596
AsuC2I	CCSGG	1 cut(s)	778
AsuHPI	GGTGA	4 cut(s)	13, 163, 164, 443
AvaI	CYCGRG	1 cut(s)	372
AvaII	GGWCC	1 cut(s)	596
BaeGI	GKGCMC	2 cut(s)	379, 417
BalI	TGGCCA	1 cut(s)	792
BamHI	GGATCC	1 cut(s)	77
BanI	GGYRCC	2 cut(s)	412, 665
BanII	GRGCYC	1 cut(s)	954
BauI	CACGAG	1 cut(s)	786
BbvI	GCAGC	3 cut(s)	252, 710, 769
BccI	CCATC	2 cut(s)	207, 376
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	5 cut(s)	192, 349, 429, 600, 794
BcnI	CCSGG	1 cut(s)	778
BcoDI	GTCTC	3 cut(s)	169, 218, 774
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	3 cut(s)	60, 72, 210
BfmI	CTRYAG	4 cut(s)	266, 396, 418, 764
BfoI	RGCGCY	1 cut(s)	922
BfrI	CTTAAG	1 cut(s)	904
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	4 cut(s)	266, 699, 714, 783
BlsI	GCNGC	4 cut(s)	267, 700, 715, 784
Bme1390I	CCNGG	6 cut(s)	192, 349, 429, 600, 778, 794
Bme18I	GGWCC	1 cut(s)	596
BmeT110I	CYCGRG	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	4 cut(s)	79, 414, 667, 731
BmrFI	CCNGG	6 cut(s)	192, 349, 429, 600, 778, 794
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	381, 630
BmuI	ACTGGG	1 cut(s)	225
BoxI	GACNNNNGTC	1 cut(s)	906
BpmI	CTGGAG	2 cut(s)	174, 738
BpuEI	CTTGAG	1 cut(s)	986
BpuMI	CCSGG	1 cut(s)	778
BsaHI	GRCGYC	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	777
BsaWI	WCCGGW	1 cut(s)	1010
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 434, 676
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	2 cut(s)	452, 747
BseBI	CCWGG	5 cut(s)	192, 349, 429, 600, 794
BseDI	CCNNGG	1 cut(s)	777
BseGI	GGATG	1 cut(s)	918
BseLI	CCNNNNNNNGG	3 cut(s)	148, 434, 676
BseMI	GCAATG	2 cut(s)	452, 747
BseMII	CTCAG	3 cut(s)	104, 158, 844
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	216
BseSI	GKGCMC	2 cut(s)	379, 417
BseXI	GCAGC	3 cut(s)	252, 710, 769
BshFI	GGCC	4 cut(s)	195, 792, 797, 973
BshNI	GGYRCC	2 cut(s)	412, 665
BsiHKCI	CYCGRG	1 cut(s)	372
BsiSI	CCGG	3 cut(s)	66, 777, 1011
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	3 cut(s)	148, 434, 676
BsmAI	GTCTC	3 cut(s)	169, 218, 774
BsmFI	GGGAC	1 cut(s)	415
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	4 cut(s)	195, 792, 797, 973
BsoBI	CYCGRG	1 cut(s)	372
Bsp1286I	GDGCHC	3 cut(s)	379, 417, 954
Bsp143I	GATC	3 cut(s)	77, 607, 1013
BspACI	CCGC	3 cut(s)	75, 86, 714
BspANI	GGCC	4 cut(s)	195, 792, 797, 973
BspCNI	CTCAG	3 cut(s)	103, 157, 843
BspLI	GGNNCC	4 cut(s)	79, 414, 667, 731
BspMAI	CTGCAG	1 cut(s)	270
BspPI	GGATC	3 cut(s)	72, 85, 1021
BspT107I	GGYRCC	2 cut(s)	412, 665
BspTI	CTTAAG	1 cut(s)	904
BsrDI	GCAATG	2 cut(s)	452, 747
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	777
BssMI	GATC	3 cut(s)	77, 607, 1013
BssNI	GRCGYC	1 cut(s)	404
BssSI	CACGAG	1 cut(s)	786
Bst2BI	CACGAG	1 cut(s)	786
Bst2UI	CCWGG	5 cut(s)	192, 349, 429, 600, 794
Bst4CI	ACNGT	4 cut(s)	46, 310, 596, 768
Bst6I	CTCTTC	2 cut(s)	225, 507
BstACI	GRCGYC	1 cut(s)	404
BstAFI	CTTAAG	1 cut(s)	904
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	4 cut(s)	90, 144, 830, 864
BstF5I	GGATG	1 cut(s)	918
BstH2I	RGCGCY	1 cut(s)	922
BstHHI	GCGC	1 cut(s)	921
BstKTI	GATC	3 cut(s)	80, 610, 1016
BstMAI	GTCTC	3 cut(s)	169, 218, 774
BstMBI	GATC	3 cut(s)	77, 607, 1013
BstMWI	GCNNNNNNNGC	4 cut(s)	201, 412, 782, 935
BstNI	CCWGG	5 cut(s)	192, 349, 429, 600, 794
BstPAI	GACNNNNGTC	1 cut(s)	906
BstSCI	CCNGG	6 cut(s)	190, 347, 427, 598, 776, 792
BstSFI	CTRYAG	4 cut(s)	266, 396, 418, 764
BstSLI	GKGCMC	2 cut(s)	379, 417
BstV1I	GCAGC	3 cut(s)	252, 710, 769
BstX2I	RGATCY	2 cut(s)	77, 607
BstYI	RGATCY	2 cut(s)	77, 607
BsuRI	GGCC	4 cut(s)	195, 792, 797, 973
BtgZI	GCGATG	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	918
Cac8I	GCNNGC	1 cut(s)	67
CfoI	GCGC	1 cut(s)	921
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	596
CseI	GACGC	2 cut(s)	412, 1001
Csp6I	GTAC	2 cut(s)	279, 547
CviAII	CATG	1 cut(s)	622
CviQI	GTAC	2 cut(s)	279, 547
DdeI	CTNAG	4 cut(s)	90, 144, 830, 864
DpnI	GATC	3 cut(s)	79, 609, 1015
DpnII	GATC	3 cut(s)	77, 607, 1013
EaeI	YGGCCR	1 cut(s)	790
Eam1104I	CTCTTC	2 cut(s)	225, 507
EarI	CTCTTC	2 cut(s)	225, 507
Eco147I	AGGCCT	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	954
Eco47I	GGWCC	1 cut(s)	596
Eco47III	AGCGCT	1 cut(s)	920
Eco57I	CTGAAG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	372
EcoRII	CCWGG	5 cut(s)	190, 347, 427, 598, 792
EcoT38I	GRGCYC	1 cut(s)	954
FaeI	CATG	1 cut(s)	625
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	1 cut(s)	621
FauI	CCCGC	1 cut(s)	93
Fnu4HI	GCNGC	4 cut(s)	266, 699, 714, 783
FokI	GGATG	1 cut(s)	925
FriOI	GRGCYC	1 cut(s)	954
Fsp4HI	GCNGC	4 cut(s)	266, 699, 714, 783
FspBI	CTAG	3 cut(s)	60, 72, 210
GlaI	GCGC	1 cut(s)	920
GluI	GCNGC	4 cut(s)	266, 699, 714, 783
GsuI	CTGGAG	2 cut(s)	174, 738
HaeII	RGCGCY	1 cut(s)	922
HaeIII	GGCC	4 cut(s)	195, 792, 797, 973
HapII	CCGG	3 cut(s)	66, 777, 1011
HgaI	GACGC	2 cut(s)	412, 1001
HhaI	GCGC	1 cut(s)	921
Hin1I	GRCGYC	1 cut(s)	404
Hin1II	CATG	1 cut(s)	625
Hin6I	GCGC	1 cut(s)	919
HinP1I	GCGC	1 cut(s)	919
HinfI	GANTC	2 cut(s)	563, 834
HpaII	CCGG	3 cut(s)	66, 777, 1011
HphI	GGTGA	4 cut(s)	13, 163, 164, 443
Hpy188I	TCNGA	3 cut(s)	618, 833, 912
Hpy188III	TCNNGA	4 cut(s)	255, 476, 753, 941
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	112, 350, 718
HpyCH4III	ACNGT	4 cut(s)	46, 310, 596, 768
HpyCH4V	TGCA	5 cut(s)	268, 643, 740, 761, 929
HpyF10VI	GCNNNNNNNGC	4 cut(s)	201, 412, 782, 935
HpyF3I	CTNAG	4 cut(s)	90, 144, 830, 864
Hsp92I	GRCGYC	1 cut(s)	404
Hsp92II	CATG	1 cut(s)	625
HspAI	GCGC	1 cut(s)	919
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	77, 607, 1013
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	3 cut(s)	252, 710, 769
LweI	GCATC	2 cut(s)	381, 630
MaeI	CTAG	3 cut(s)	60, 72, 210
MalI	GATC	3 cut(s)	79, 609, 1015
MboI	GATC	3 cut(s)	77, 607, 1013
MboII	GAAGA	9 cut(s)	97, 100, 103, 177, 212, 481, 524, 558, 698
MflI	RGATCY	2 cut(s)	77, 607
MhlI	GDGCHC	3 cut(s)	379, 417, 954
MlsI	TGGCCA	1 cut(s)	792
MluCI	AATT	3 cut(s)	381, 528, 756
MluNI	TGGCCA	1 cut(s)	792
MmeI	TCCRAC	1 cut(s)	890
Mox20I	TGGCCA	1 cut(s)	792
MroNI	GCCGGC	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	792
MseI	TTAA	6 cut(s)	260, 330, 852, 894, 905, 924
Msp20I	TGGCCA	1 cut(s)	792
MspA1I	CMGCKG	1 cut(s)	716
MspCI	CTTAAG	1 cut(s)	904
MspI	CCGG	3 cut(s)	66, 777, 1011
MspR9I	CCNGG	6 cut(s)	192, 349, 429, 600, 778, 794
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	5 cut(s)	192, 349, 429, 600, 794
MwoI	GCNNNNNNNGC	4 cut(s)	201, 412, 782, 935
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	778
NdeII	GATC	3 cut(s)	77, 607, 1013
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	1 cut(s)	625
NlaIV	GGNNCC	4 cut(s)	79, 414, 667, 731
PceI	AGGCCT	1 cut(s)	195
PctI	GAATGC	1 cut(s)	469
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	563, 834
PflMI	CCANNNNNTGG	1 cut(s)	676
PfoI	TCCNGGA	1 cut(s)	347
PkrI	GCNGC	4 cut(s)	267, 700, 715, 784
PshAI	GACNNNNGTC	1 cut(s)	906
Psp6I	CCWGG	5 cut(s)	190, 347, 427, 598, 792
PspGI	CCWGG	5 cut(s)	190, 347, 427, 598, 792
PspN4I	GGNNCC	4 cut(s)	79, 414, 667, 731
PspPI	GGNCC	1 cut(s)	596
PstI	CTGCAG	1 cut(s)	270
PsuI	RGATCY	2 cut(s)	77, 607
RsaI	GTAC	2 cut(s)	280, 548
RsaNI	GTAC	2 cut(s)	279, 547
SaqAI	TTAA	6 cut(s)	260, 330, 852, 894, 905, 924
SatI	GCNGC	4 cut(s)	266, 699, 714, 783
Sau3AI	GATC	3 cut(s)	77, 607, 1013
Sau96I	GGNCC	1 cut(s)	596
ScrFI	CCNGG	6 cut(s)	192, 349, 429, 600, 778, 794
SduI	GDGCHC	3 cut(s)	379, 417, 954
SfaNI	GCATC	2 cut(s)	381, 630
SfcI	CTRYAG	4 cut(s)	266, 396, 418, 764
SinI	GGWCC	1 cut(s)	596
SmlI	CTYRAG	2 cut(s)	904, 1001
SmoI	CTYRAG	2 cut(s)	904, 1001
SpeI	ACTAGT	1 cut(s)	59
Sse9I	AATT	3 cut(s)	381, 528, 756
SseBI	AGGCCT	1 cut(s)	195
SsiI	CCGC	3 cut(s)	75, 86, 714
SspMI	CTAG	3 cut(s)	60, 72, 210
StuI	AGGCCT	1 cut(s)	195
StyD4I	CCNGG	6 cut(s)	190, 347, 427, 598, 776, 792
TaaI	ACNGT	4 cut(s)	46, 310, 596, 768
TaqI	TCGA	2 cut(s)	475, 552
TasI	AATT	3 cut(s)	381, 528, 756
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	2 cut(s)	563, 834
Tru1I	TTAA	6 cut(s)	260, 330, 852, 894, 905, 924
Tru9I	TTAA	6 cut(s)	260, 330, 852, 894, 905, 924
TseI	GCWGC	3 cut(s)	265, 698, 782
TspDTI	ATGAA	5 cut(s)	481, 525, 828, 837, 929
Van91I	CCANNNNNTGG	1 cut(s)	676
Vha464I	CTTAAG	1 cut(s)	904
VpaK11BI	GGWCC	1 cut(s)	596
XapI	RAATTY	1 cut(s)	528
XspI	CTAG	3 cut(s)	60, 72, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.