PHD zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G32810 |
| fragaria_vesca | FvH4_5g10620 |
| malus_domestica | MD06G1121800.v1.1 |
| prunus_persica | Prupe.5G132500_v2.0.a1 Prupe.5G132500_v2.0.a1 Prupe.5G132500_v2.0.a1 |
| pyrus_communis | pycom06g11290 |
| rosa_chinensis | RchiOBHm_Chr7g0187521 |
| rosa_laevigata | RLG00000004774 |
| rosa_multiflora | Rmu_sc0019127.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00267360 |
| rosa_rugosa | Rorug06G0482200 Rorug06G0482300 Rorug06G0482400 |
| rosa_samantha | Rh7AG087000 Rh7BG088400 Rh7CG087700 Rh7DG089300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1027, 2290 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 998 |
| Acc16I | TGCGCA | 2 cut(s) | 246, 1428 |
| Acc36I | ACCTGC | 3 cut(s) | 1018, 1027, 2290 |
| Acc65I | GGTACC | 1 cut(s) | 2563 |
| AccB1I | GGYRCC | 1 cut(s) | 2563 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1675 |
| AccI | GTMKAC | 1 cut(s) | 449 |
| AccIII | TCCGGA | 1 cut(s) | 40 |
| AciI | CCGC | 8 cut(s) | 19, 84, 305, 325, 642, 867, 2894, 3315 |
| AclWI | GGATC | 5 cut(s) | 1440, 1917, 1977, 2155, 2478 |
| AcoI | YGGCCR | 1 cut(s) | 1123 |
| AcsI | RAATTY | 7 cut(s) | 91, 381, 491, 920, 1537, 2476, 3022 |
| AcuI | CTGAAG | 7 cut(s) | 8, 1431, 1641, 2109, 2559, 3075, 3297 |
| AcvI | CACGTG | 1 cut(s) | 2381 |
| AdeI | CACNNNGTG | 1 cut(s) | 153 |
| AfaI | GTAC | 9 cut(s) | 164, 369, 1734, 2376, 2565, 2605, 2655, 2754, 2815 |
| AfeI | AGCGCT | 1 cut(s) | 2930 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 441, 502, 634, 1328, 1675, 2667 |
| AflIII | ACRYGT | 3 cut(s) | 370, 1455, 2380 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1951 |
| AjiI | CACGTC | 1 cut(s) | 2268 |
| AjnI | CCWGG | 2 cut(s) | 149, 2821 |
| Alw21I | GWGCWC | 2 cut(s) | 147, 158 |
| Alw26I | GTCTC | 2 cut(s) | 3169, 3353 |
| Alw44I | GTGCAC | 1 cut(s) | 143 |
| AlwI | GGATC | 5 cut(s) | 1440, 1917, 1977, 2155, 2478 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 605, 1019 |
| Ama87I | CYCGRG | 2 cut(s) | 434, 898 |
| Aor13HI | TCCGGA | 1 cut(s) | 40 |
| Aor51HI | AGCGCT | 1 cut(s) | 2930 |
| AoxI | GGCC | 5 cut(s) | 625, 749, 1123, 1495, 3339 |
| ApaLI | GTGCAC | 1 cut(s) | 143 |
| ApeKI | GCWGC | 9 cut(s) | 605, 833, 1013, 1022, 1289, 1547, 2597, 2618, 2890 |
| ApoI | RAATTY | 7 cut(s) | 91, 381, 491, 920, 1537, 2476, 3022 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 99, 131 |
| AseI | ATTAAT | 1 cut(s) | 1476 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1774 |
| Asp718I | GGTACC | 1 cut(s) | 2563 |
| AspLEI | GCGC | 7 cut(s) | 247, 1429, 2204, 2448, 2795, 2859, 2931 |
| AsuC2I | CCSGG | 2 cut(s) | 387, 1704 |
| AsuHPI | GGTGA | 4 cut(s) | 1109, 1147, 1850, 2228 |
| AvaI | CYCGRG | 2 cut(s) | 434, 898 |
| BaeGI | GKGCMC | 2 cut(s) | 147, 465 |
| BalI | TGGCCA | 1 cut(s) | 1125 |
| BanI | GGYRCC | 1 cut(s) | 2563 |
| BanII | GRGCYC | 2 cut(s) | 1394, 2995 |
| BauI | CACGAG | 1 cut(s) | 2370 |
| BbrPI | CACGTG | 1 cut(s) | 2381 |
| BbsI | GAAGAC | 6 cut(s) | 546, 950, 1401, 1944, 2593, 3063 |
| Bbv12I | GWGCWC | 2 cut(s) | 147, 158 |
| BbvI | GCAGC | 9 cut(s) | 592, 820, 1025, 1034, 1276, 1559, 2605, 2609, 2877 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2306, 2340, 2589, 2623 |
| BciT130I | CCWGG | 2 cut(s) | 151, 2823 |
| BclI | TGATCA | 1 cut(s) | 1216 |
| BcnI | CCSGG | 2 cut(s) | 387, 1704 |
| BcoDI | GTCTC | 2 cut(s) | 3169, 3353 |
| BfmI | CTRYAG | 5 cut(s) | 1011, 1020, 1338, 2115, 3079 |
| BfoI | RGCGCY | 1 cut(s) | 2932 |
| BfuAI | ACCTGC | 3 cut(s) | 1018, 1027, 2290 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2899 |
| BglII | AGATCT | 1 cut(s) | 3229 |
| BlpI | GCTNAGC | 1 cut(s) | 3236 |
| Bme1390I | CCNGG | 4 cut(s) | 151, 387, 1704, 2823 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1951 |
| BmeT110I | CYCGRG | 2 cut(s) | 434, 898 |
| BmgBI | CACGTC | 1 cut(s) | 2268 |
| BmiI | GGNNCC | 8 cut(s) | 36, 395, 396, 626, 1391, 2516, 2565, 3013 |
| BmrFI | CCNGG | 4 cut(s) | 151, 387, 1704, 2823 |
| BmrI | ACTGGG | 5 cut(s) | 58, 462, 593, 1731, 2115 |
| BmuI | ACTGGG | 5 cut(s) | 58, 462, 593, 1731, 2115 |
| BoxI | GACNNNNGTC | 1 cut(s) | 936 |
| BpiI | GAAGAC | 6 cut(s) | 546, 950, 1401, 1944, 2593, 3063 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2353, 2385, 3166, 3198 |
| BpmI | CTGGAG | 2 cut(s) | 1710, 2481 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3236 |
| BpuEI | CTTGAG | 1 cut(s) | 2002 |
| BpuMI | CCSGG | 2 cut(s) | 387, 1704 |
| BsaAI | YACGTR | 2 cut(s) | 166, 2381 |
| BsaJI | CCNNGG | 4 cut(s) | 69, 951, 1669, 2765 |
| BsaWI | WCCGGW | 1 cut(s) | 40 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 441, 502, 634, 1328, 1675, 2667 |
| Bse3DI | GCAATG | 4 cut(s) | 1794, 2204, 2395, 3375 |
| BseAI | TCCGGA | 1 cut(s) | 40 |
| BseBI | CCWGG | 2 cut(s) | 151, 2823 |
| BseDI | CCNNGG | 4 cut(s) | 69, 951, 1669, 2765 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 441, 502, 634, 1328, 1675, 2667 |
| BseMI | GCAATG | 4 cut(s) | 1794, 2204, 2395, 3375 |
| BseRI | GAGGAG | 3 cut(s) | 374, 1404, 2885 |
| BseSI | GKGCMC | 2 cut(s) | 147, 465 |
| BseXI | GCAGC | 9 cut(s) | 592, 820, 1025, 1034, 1276, 1559, 2605, 2609, 2877 |
| BsgI | GTGCAG | 3 cut(s) | 1163, 1275, 2268 |
| Bsh1285I | CGRYCG | 2 cut(s) | 14, 3007 |
| BshFI | GGCC | 5 cut(s) | 627, 751, 1125, 1497, 3341 |
| BshNI | GGYRCC | 1 cut(s) | 2563 |
| BsiEI | CGRYCG | 2 cut(s) | 14, 3007 |
| BsiHKAI | GWGCWC | 2 cut(s) | 147, 158 |
| BsiHKCI | CYCGRG | 2 cut(s) | 434, 898 |
| BsiSI | CCGG | 5 cut(s) | 41, 386, 768, 1704, 2023 |
| BslFI | GGGAC | 5 cut(s) | 407, 808, 1723, 1958, 2997 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 441, 502, 634, 1328, 1675, 2667 |
| BsmAI | GTCTC | 2 cut(s) | 3169, 3353 |
| BsmBI | CGTCTC | 1 cut(s) | 3353 |
| BsmFI | GGGAC | 5 cut(s) | 407, 808, 1723, 1958, 2997 |
| BsmI | GAATGC | 1 cut(s) | 2776 |
| BsnI | GGCC | 5 cut(s) | 627, 751, 1125, 1497, 3341 |
| BsoBI | CYCGRG | 2 cut(s) | 434, 898 |
| Bsp1286I | GDGCHC | 5 cut(s) | 147, 158, 465, 1394, 2995 |
| Bsp13I | TCCGGA | 1 cut(s) | 40 |
| Bsp1407I | TGTACA | 1 cut(s) | 2603 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3236 |
| Bsp19I | CCATGG | 1 cut(s) | 1669 |
| BspACI | CCGC | 8 cut(s) | 19, 84, 305, 325, 642, 867, 2894, 3315 |
| BspANI | GGCC | 5 cut(s) | 627, 751, 1125, 1497, 3341 |
| BspEI | TCCGGA | 1 cut(s) | 40 |
| BspHI | TCATGA | 1 cut(s) | 2029 |
| BspLI | GGNNCC | 8 cut(s) | 36, 395, 396, 626, 1391, 2516, 2565, 3013 |
| BspMAI | CTGCAG | 4 cut(s) | 1015, 1024, 2119, 3083 |
| BspMI | ACCTGC | 3 cut(s) | 1018, 1027, 2290 |
| BspPI | GGATC | 5 cut(s) | 1440, 1917, 1977, 2155, 2478 |
| BspQI | GCTCTTC | 2 cut(s) | 1683, 3189 |
| BspT107I | GGYRCC | 1 cut(s) | 2563 |
| BsrDI | GCAATG | 4 cut(s) | 1794, 2204, 2395, 3375 |
| BsrGI | TGTACA | 1 cut(s) | 2603 |
| BssECI | CCNNGG | 4 cut(s) | 69, 951, 1669, 2765 |
| BssSI | CACGAG | 1 cut(s) | 2370 |
| BssT1I | CCWWGG | 3 cut(s) | 951, 1669, 2765 |
| Bst2BI | CACGAG | 1 cut(s) | 2370 |
| Bst2UI | CCWGG | 2 cut(s) | 151, 2823 |
| Bst4CI | ACNGT | 8 cut(s) | 70, 277, 1489, 1753, 1783, 2354, 2650, 2705 |
| Bst6I | CTCTTC | 7 cut(s) | 102, 627, 1036, 1054, 1683, 3187, 3189 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1019 |
| BstAUI | TGTACA | 1 cut(s) | 2603 |
| BstBAI | YACGTR | 2 cut(s) | 166, 2381 |
| BstC8I | GCNNGC | 5 cut(s) | 773, 1127, 1601, 2301, 2855 |
| BstDSI | CCRYGG | 2 cut(s) | 69, 1669 |
| BstH2I | RGCGCY | 1 cut(s) | 2932 |
| BstHHI | GCGC | 7 cut(s) | 247, 1429, 2204, 2448, 2795, 2859, 2931 |
| BstMAI | GTCTC | 2 cut(s) | 3169, 3353 |
| BstMCI | CGRYCG | 2 cut(s) | 14, 3007 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 313, 833, 1019, 1022, 2201, 2690, 2899 |
| BstNI | CCWGG | 2 cut(s) | 151, 2823 |
| BstNSI | RCATGY | 7 cut(s) | 374, 801, 1459, 2177, 2604, 3289, 3324 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 936 |
| BstSCI | CCNGG | 4 cut(s) | 149, 385, 1702, 2821 |
| BstSFI | CTRYAG | 5 cut(s) | 1011, 1020, 1338, 2115, 3079 |
| BstSLI | GKGCMC | 2 cut(s) | 147, 465 |
| BstV1I | GCAGC | 9 cut(s) | 592, 820, 1025, 1034, 1276, 1559, 2605, 2609, 2877 |
| BstV2I | GAAGAC | 6 cut(s) | 546, 950, 1401, 1944, 2593, 3063 |
| BstX2I | RGATCY | 4 cut(s) | 1432, 1982, 2147, 3229 |
| BstYI | RGATCY | 4 cut(s) | 1432, 1982, 2147, 3229 |
| BsuRI | GGCC | 5 cut(s) | 627, 751, 1125, 1497, 3341 |
| BtgI | CCRYGG | 2 cut(s) | 69, 1669 |
| BtgZI | GCGATG | 1 cut(s) | 3255 |
| BtrI | CACGTC | 1 cut(s) | 2268 |
| BtsI | GCAGTG | 3 cut(s) | 1146, 2688, 2694 |
| BveI | ACCTGC | 3 cut(s) | 1018, 1027, 2290 |
| Cac8I | GCNNGC | 5 cut(s) | 773, 1127, 1601, 2301, 2855 |
| CaiI | CAGNNNCTG | 2 cut(s) | 605, 1019 |
| CciI | TCATGA | 1 cut(s) | 2029 |
| CfoI | GCGC | 7 cut(s) | 247, 1429, 2204, 2448, 2795, 2859, 2931 |
| CsiI | ACCWGGT | 1 cut(s) | 149 |
| Csp6I | GTAC | 9 cut(s) | 163, 368, 1733, 2375, 2564, 2604, 2654, 2753, 2814 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 582, 617 |
| CviQI | GTAC | 9 cut(s) | 163, 368, 1733, 2375, 2564, 2604, 2654, 2753, 2814 |
| DraI | TTTAAA | 1 cut(s) | 1398 |
| DraIII | CACNNNGTG | 1 cut(s) | 153 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 998 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1951 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 998 |
| EaeI | YGGCCR | 1 cut(s) | 1123 |
| Eam1104I | CTCTTC | 7 cut(s) | 102, 627, 1036, 1054, 1683, 3187, 3189 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1951 |
| EarI | CTCTTC | 7 cut(s) | 102, 627, 1036, 1054, 1683, 3187, 3189 |
| EciI | GGCGGA | 2 cut(s) | 294, 3330 |
| Eco130I | CCWWGG | 3 cut(s) | 951, 1669, 2765 |
| Eco147I | AGGCCT | 1 cut(s) | 3341 |
| Eco24I | GRGCYC | 2 cut(s) | 1394, 2995 |
| Eco47III | AGCGCT | 1 cut(s) | 2930 |
| Eco57I | CTGAAG | 7 cut(s) | 8, 1431, 1641, 2109, 2559, 3075, 3297 |
| Eco72I | CACGTG | 1 cut(s) | 2381 |
| Eco88I | CYCGRG | 2 cut(s) | 434, 898 |
| EcoO109I | RGGNCCY | 1 cut(s) | 394 |
| EcoRI | GAATTC | 3 cut(s) | 381, 491, 2476 |
| EcoRII | CCWGG | 2 cut(s) | 149, 2821 |
| EcoT14I | CCWWGG | 3 cut(s) | 951, 1669, 2765 |
| EcoT22I | ATGCAT | 2 cut(s) | 2395, 2938 |
| EcoT38I | GRGCYC | 2 cut(s) | 1394, 2995 |
| ErhI | CCWWGG | 3 cut(s) | 951, 1669, 2765 |
| Esp3I | CGTCTC | 1 cut(s) | 3353 |
| FaqI | GGGAC | 5 cut(s) | 407, 808, 1723, 1958, 2997 |
| FauI | CCCGC | 1 cut(s) | 635 |
| FauNDI | CATATG | 1 cut(s) | 2866 |
| FbaI | TGATCA | 1 cut(s) | 1216 |
| FblI | GTMKAC | 1 cut(s) | 449 |
| FriOI | GRGCYC | 2 cut(s) | 1394, 2995 |
| FspI | TGCGCA | 2 cut(s) | 246, 1428 |
| GlaI | GCGC | 7 cut(s) | 246, 1428, 2203, 2447, 2794, 2858, 2930 |
| GsuI | CTGGAG | 2 cut(s) | 1710, 2481 |
| HaeII | RGCGCY | 1 cut(s) | 2932 |
| HaeIII | GGCC | 5 cut(s) | 627, 751, 1125, 1497, 3341 |
| HapII | CCGG | 5 cut(s) | 41, 386, 768, 1704, 2023 |
| HhaI | GCGC | 7 cut(s) | 247, 1429, 2204, 2448, 2795, 2859, 2931 |
| Hin6I | GCGC | 7 cut(s) | 245, 1427, 2202, 2446, 2793, 2857, 2929 |
| HinP1I | GCGC | 7 cut(s) | 245, 1427, 2202, 2446, 2793, 2857, 2929 |
| HincII | GTYRAC | 1 cut(s) | 55 |
| HindII | GTYRAC | 1 cut(s) | 55 |
| HindIII | AAGCTT | 2 cut(s) | 739, 1085 |
| HpaI | GTTAAC | 1 cut(s) | 55 |
| HpaII | CCGG | 5 cut(s) | 41, 386, 768, 1704, 2023 |
| HphI | GGTGA | 4 cut(s) | 1109, 1147, 1850, 2228 |
| Hpy188III | TCNNGA | 6 cut(s) | 41, 434, 2030, 2460, 2487, 2963 |
| Hpy99I | CGWCG | 3 cut(s) | 101, 128, 424 |
| HpyCH4III | ACNGT | 8 cut(s) | 70, 277, 1489, 1753, 1783, 2354, 2650, 2705 |
| HpyCH4IV | ACGT | 4 cut(s) | 165, 2267, 2380, 2435 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 313, 833, 1019, 1022, 2201, 2690, 2899 |
| HpySE526I | ACGT | 4 cut(s) | 165, 2267, 2380, 2435 |
| HspAI | GCGC | 7 cut(s) | 245, 1427, 2202, 2446, 2793, 2857, 2929 |
| KflI | GGGWCCC | 1 cut(s) | 394 |
| Kpn2I | TCCGGA | 1 cut(s) | 40 |
| KpnI | GGTACC | 1 cut(s) | 2567 |
| Ksp22I | TGATCA | 1 cut(s) | 1216 |
| KspAI | GTTAAC | 1 cut(s) | 55 |
| LguI | GCTCTTC | 2 cut(s) | 1683, 3189 |
| LmnI | GCTCC | 4 cut(s) | 259, 1389, 2872, 3317 |
| Lsp1109I | GCAGC | 9 cut(s) | 592, 820, 1025, 1034, 1276, 1559, 2605, 2609, 2877 |
| MabI | ACCWGGT | 1 cut(s) | 149 |
| MaeII | ACGT | 4 cut(s) | 165, 2267, 2380, 2435 |
| MaeIII | GTNAC | 6 cut(s) | 989, 1180, 1483, 1508, 2258, 2312 |
| MfeI | CAATTG | 2 cut(s) | 118, 914 |
| MflI | RGATCY | 4 cut(s) | 1432, 1982, 2147, 3229 |
| MhlI | GDGCHC | 5 cut(s) | 147, 158, 465, 1394, 2995 |
| MlsI | TGGCCA | 1 cut(s) | 1125 |
| MluNI | TGGCCA | 1 cut(s) | 1125 |
| MlyI | GAGTC | 5 cut(s) | 986, 1633, 2266, 3053, 3110 |
| MmeI | TCCRAC | 1 cut(s) | 2125 |
| Mox20I | TGGCCA | 1 cut(s) | 1125 |
| Mph1103I | ATGCAT | 2 cut(s) | 2395, 2938 |
| MroI | TCCGGA | 1 cut(s) | 40 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1774 |
| MscI | TGGCCA | 1 cut(s) | 1125 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1422, 2438, 2538 |
| Msp20I | TGGCCA | 1 cut(s) | 1125 |
| MspI | CCGG | 5 cut(s) | 41, 386, 768, 1704, 2023 |
| MspR9I | CCNGG | 4 cut(s) | 151, 387, 1704, 2823 |
| MunI | CAATTG | 2 cut(s) | 118, 914 |
| Mva1269I | GAATGC | 1 cut(s) | 2776 |
| MvaI | CCWGG | 2 cut(s) | 151, 2823 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 313, 833, 1019, 1022, 2201, 2690, 2899 |
| NciI | CCSGG | 2 cut(s) | 387, 1704 |
| NcoI | CCATGG | 1 cut(s) | 1669 |
| NdeI | CATATG | 1 cut(s) | 2866 |
| NlaIV | GGNNCC | 8 cut(s) | 36, 395, 396, 626, 1391, 2516, 2565, 3013 |
| NmeAIII | GCCGAG | 2 cut(s) | 653, 2974 |
| NmuCI | GTSAC | 6 cut(s) | 989, 1180, 1483, 1508, 2258, 2312 |
| NsbI | TGCGCA | 2 cut(s) | 246, 1428 |
| NsiI | ATGCAT | 2 cut(s) | 2395, 2938 |
| NspI | RCATGY | 7 cut(s) | 374, 801, 1459, 2177, 2604, 3289, 3324 |
| PagI | TCATGA | 1 cut(s) | 2029 |
| PaqCI | CACCTGC | 2 cut(s) | 1027, 2290 |
| PceI | AGGCCT | 1 cut(s) | 3341 |
| PciI | ACATGT | 2 cut(s) | 370, 1455 |
| PciSI | GCTCTTC | 2 cut(s) | 1683, 3189 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 102, 132, 2377 |
| PctI | GAATGC | 1 cut(s) | 2776 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1774 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1675 |
| Ple19I | CGATCG | 2 cut(s) | 14, 3007 |
| PleI | GAGTC | 5 cut(s) | 986, 1633, 2265, 3053, 3109 |
| PmaCI | CACGTG | 1 cut(s) | 2381 |
| PmlI | CACGTG | 1 cut(s) | 2381 |
| PpsI | GAGTC | 5 cut(s) | 986, 1633, 2265, 3053, 3109 |
| Ppu21I | YACGTR | 2 cut(s) | 166, 2381 |
| PpuMI | RGGWCCY | 1 cut(s) | 394 |
| PscI | ACATGT | 2 cut(s) | 370, 1455 |
| PshAI | GACNNNNGTC | 1 cut(s) | 936 |
| PshBI | ATTAAT | 1 cut(s) | 1476 |
| Psp5II | RGGWCCY | 1 cut(s) | 394 |
| Psp6I | CCWGG | 2 cut(s) | 149, 2821 |
| PspCI | CACGTG | 1 cut(s) | 2381 |
| PspGI | CCWGG | 2 cut(s) | 149, 2821 |
| PspN4I | GGNNCC | 8 cut(s) | 36, 395, 396, 626, 1391, 2516, 2565, 3013 |
| PspPPI | RGGWCCY | 1 cut(s) | 394 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 2313, 2345, 2367, 2399 |
| PstI | CTGCAG | 4 cut(s) | 1015, 1024, 2119, 3083 |
| PstNI | CAGNNNCTG | 2 cut(s) | 605, 1019 |
| PsuI | RGATCY | 4 cut(s) | 1432, 1982, 2147, 3229 |
| PvuI | CGATCG | 2 cut(s) | 14, 3007 |
| RsaI | GTAC | 9 cut(s) | 164, 369, 1734, 2376, 2565, 2605, 2655, 2754, 2815 |
| RsaNI | GTAC | 9 cut(s) | 163, 368, 1733, 2375, 2564, 2604, 2654, 2753, 2814 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1422, 2438, 2538 |
| SapI | GCTCTTC | 2 cut(s) | 1683, 3189 |
| SchI | GAGTC | 5 cut(s) | 986, 1633, 2266, 3053, 3110 |
| ScrFI | CCNGG | 4 cut(s) | 151, 387, 1704, 2823 |
| SduI | GDGCHC | 5 cut(s) | 147, 158, 465, 1394, 2995 |
| SexAI | ACCWGGT | 1 cut(s) | 149 |
| SfcI | CTRYAG | 5 cut(s) | 1011, 1020, 1338, 2115, 3079 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1422, 2438, 2538 |
| SmlI | CTYRAG | 1 cut(s) | 2017 |
| SmoI | CTYRAG | 1 cut(s) | 2017 |
| SseBI | AGGCCT | 1 cut(s) | 3341 |
| SsiI | CCGC | 8 cut(s) | 19, 84, 305, 325, 642, 867, 2894, 3315 |
| StuI | AGGCCT | 1 cut(s) | 3341 |
| StyD4I | CCNGG | 4 cut(s) | 149, 385, 1702, 2821 |
| StyI | CCWWGG | 3 cut(s) | 951, 1669, 2765 |
| TaaI | ACNGT | 8 cut(s) | 70, 277, 1489, 1753, 1783, 2354, 2650, 2705 |
| TaiI | ACGT | 4 cut(s) | 168, 2270, 2383, 2438 |
| TaqI | TCGA | 4 cut(s) | 10, 96, 2980, 3003 |
| TaqII | GACCGA | 1 cut(s) | 1120 |
| TatI | WGTACW | 1 cut(s) | 2603 |
| TauI | GCSGC | 2 cut(s) | 327, 2896 |
| TseFI | GTSAC | 6 cut(s) | 989, 1180, 1483, 1508, 2258, 2312 |
| TseI | GCWGC | 9 cut(s) | 605, 833, 1013, 1022, 1289, 1547, 2597, 2618, 2890 |
| Tsp45I | GTSAC | 6 cut(s) | 989, 1180, 1483, 1508, 2258, 2312 |
| TspGWI | ACGGA | 1 cut(s) | 3235 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1675 |
| VneI | GTGCAC | 1 cut(s) | 143 |
| VspI | ATTAAT | 1 cut(s) | 1476 |
| XapI | RAATTY | 7 cut(s) | 91, 381, 491, 920, 1537, 2476, 3022 |
| XbaI | TCTAGA | 1 cut(s) | 2486 |
| XceI | RCATGY | 7 cut(s) | 374, 801, 1459, 2177, 2604, 3289, 3324 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1672 |
| XmiI | GTMKAC | 1 cut(s) | 449 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1774 |
| Zsp2I | ATGCAT | 2 cut(s) | 2395, 2938 |