Rorug06G0482200

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
60309074 .. 60309440
367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0482200.1

Sequence Viewer

Length: 279 bp
ATGGCGTTGTGGCGTAAGATGAAGTTTCCGATGCGGAGAACTTTTAACCGGGTCGCCACCCGCGTCGGACTCAAAAAAACCGGGGTACCAAAGCTGCGACACGATGTGAAGGCTTGCGAGTATGAGGACGTGCGTGTGATGTGGAACATACTCAACAAAAATGAGCCAGAGACTATTCGATTGGGAGGAAGCTCAAGGAAGAAGAAGAAGAAGAAGATGCCTTCATGCAATTTCTTGGCCGTGCTTAAACGCACACCACTTATGTGCCGTGCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

92

Amino Acids

10.82

Weight (kDa)

10.88

Isoelectric Point (pI)

73.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013452)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 85
AccB1I GGYRCC 1 cut(s) 85
AccII CGCG 1 cut(s) 63
AciI CCGC 2 cut(s) 34, 61
AcoI YGGCCR 1 cut(s) 237
AdeI CACNNNGTG 1 cut(s) 106
AfaI GTAC 1 cut(s) 87
AjiI CACGTC 1 cut(s) 130
AleI CACNNNNGTG 1 cut(s) 262
AluBI AGCT 2 cut(s) 94, 192
AluI AGCT 2 cut(s) 94, 192
Alw26I GTCTC 1 cut(s) 164
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 94
Asp718I GGTACC 1 cut(s) 85
AsuC2I CCSGG 2 cut(s) 50, 82
BaeI ACNNNNGTAYC 2 cut(s) 69, 102
BanI GGYRCC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 81
BceAI ACGGC 2 cut(s) 224, 252
BcnI CCSGG 2 cut(s) 50, 82
BcoDI GTCTC 1 cut(s) 164
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme1390I CCNGG 2 cut(s) 50, 82
BmgBI CACGTC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 2 cut(s) 50, 82
BmsI GCATC 2 cut(s) 21, 207
BpuEI CTTGAG 1 cut(s) 178
BpuMI CCSGG 2 cut(s) 50, 82
BsaJI CCNNGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 81
BseXI GCAGC 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 1 cut(s) 239
BshNI GGYRCC 1 cut(s) 85
BsiSI CCGG 2 cut(s) 49, 81
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 1 cut(s) 239
BspACI CCGC 2 cut(s) 34, 61
BspANI GGCC 1 cut(s) 239
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 115
BstFNI CGCG 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 48, 80
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 239
BtrI CACGTC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 115
CseI GACGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 86
CviAII CATG 1 cut(s) 225
CviJI RGCY 5 cut(s) 94, 113, 166, 192, 239
CviKI_1 RGCY 5 cut(s) 94, 113, 166, 192, 239
CviQI GTAC 1 cut(s) 86
DraIII CACNNNGTG 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 237
FaeI CATG 1 cut(s) 228
FaiI YATR 4 cut(s) 123, 149, 226, 263
FatI CATG 1 cut(s) 224
FauI CCCGC 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 95
HaeIII GGCC 1 cut(s) 239
HapII CCGG 2 cut(s) 49, 81
HgaI GACGC 1 cut(s) 52
Hin1II CATG 1 cut(s) 228
HinfI GANTC 1 cut(s) 69
HpaII CCGG 2 cut(s) 49, 81
Hpy188I TCNGA 2 cut(s) 30, 68
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 103, 231
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 228
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 1 cut(s) 228
KpnI GGTACC 1 cut(s) 89
LpnPI CCDG 3 cut(s) 62, 94, 180
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 2 cut(s) 21, 207
MaeII ACGT 1 cut(s) 129
MboII GAAGA 6 cut(s) 211, 214, 217, 220, 223, 226
MluCI AATT 1 cut(s) 229
MlyI GAGTC 1 cut(s) 63
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 2 cut(s) 118, 179
MseI TTAA 2 cut(s) 45, 246
MslI CAYNNNNRTG 1 cut(s) 262
MspI CCGG 2 cut(s) 49, 81
MspR9I CCNGG 2 cut(s) 50, 82
MvnI CGCG 1 cut(s) 63
NciI CCSGG 2 cut(s) 50, 82
NlaIII CATG 1 cut(s) 228
NlaIV GGNNCC 1 cut(s) 87
OliI CACNNNNGTG 1 cut(s) 262
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PkrI GCNGC 1 cut(s) 96
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 87
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 262
SaqAI TTAA 2 cut(s) 45, 246
SatI GCNGC 1 cut(s) 95
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 2 cut(s) 50, 82
SetI ASST 3 cut(s) 96, 132, 194
SfaNI GCATC 2 cut(s) 21, 207
SmiMI CAYNNNNRTG 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 1 cut(s) 229
SsiI CCGC 2 cut(s) 34, 61
StyD4I CCNGG 2 cut(s) 48, 80
TaiI ACGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 178
TasI AATT 1 cut(s) 229
Tru1I TTAA 2 cut(s) 45, 246
Tru9I TTAA 2 cut(s) 45, 246
TseI GCWGC 1 cut(s) 94
TspDTI ATGAA 2 cut(s) 35, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.