PHD zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G32810 |
| fragaria_vesca | FvH4_5g10620 |
| malus_domestica | MD06G1121800.v1.1 |
| prunus_persica | Prupe.5G132500_v2.0.a1 Prupe.5G132500_v2.0.a1 Prupe.5G132500_v2.0.a1 |
| pyrus_communis | pycom06g11290 |
| rosa_chinensis | RchiOBHm_Chr7g0187521 |
| rosa_laevigata | RLG00000004774 |
| rosa_multiflora | Rmu_sc0019127.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00267360 |
| rosa_rugosa | Rorug06G0482200 Rorug06G0482300 Rorug06G0482400 |
| rosa_samantha | Rh7AG087000 Rh7BG088400 Rh7CG087700 Rh7DG089300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 246 |
| Acc36I | ACCTGC | 1 cut(s) | 1033 |
| AccI | GTMKAC | 3 cut(s) | 449, 757, 1050 |
| AccII | CGCG | 1 cut(s) | 1099 |
| AccIII | TCCGGA | 1 cut(s) | 433 |
| AclWI | GGATC | 9 cut(s) | 1364, 1610, 1679, 1938, 1998, 2152, 2170, 2493, 2659 |
| AcoI | YGGCCR | 1 cut(s) | 1147 |
| AcsI | RAATTY | 6 cut(s) | 530, 935, 1110, 1561, 2014, 3034 |
| AcuI | CTGAAG | 7 cut(s) | 8, 1151, 1302, 1731, 2124, 3087, 3182 |
| AcvI | CACGTG | 2 cut(s) | 2396, 2549 |
| AdeI | CACNNNGTG | 2 cut(s) | 153, 2309 |
| AfaI | GTAC | 8 cut(s) | 1509, 2193, 2382, 2391, 2464, 2667, 2766, 2827 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 391, 502, 649, 822, 1301, 2531, 3344 |
| AflIII | ACRYGT | 5 cut(s) | 1097, 1278, 1479, 2188, 2395 |
| AgsI | TTSAA | 9 cut(s) | 592, 682, 1064, 1116, 1340, 1384, 1423, 1722, 2242 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1972 |
| AhlI | ACTAGT | 2 cut(s) | 1510, 3362 |
| AjnI | CCWGG | 2 cut(s) | 320, 2331 |
| Alw21I | GWGCWC | 7 cut(s) | 147, 158, 293, 730, 886, 1224, 2364 |
| Alw26I | GTCTC | 4 cut(s) | 1710, 2791, 3128, 3371 |
| Alw44I | GTGCAC | 2 cut(s) | 143, 882 |
| AlwI | GGATC | 9 cut(s) | 1364, 1610, 1679, 1938, 1998, 2152, 2170, 2493, 2659 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3065 |
| Ama87I | CYCGRG | 1 cut(s) | 385 |
| Aor13HI | TCCGGA | 1 cut(s) | 433 |
| AoxI | GGCC | 6 cut(s) | 326, 640, 764, 1147, 2064, 3354 |
| ApaLI | GTGCAC | 2 cut(s) | 143, 882 |
| ApeKI | GCWGC | 3 cut(s) | 1235, 1313, 2660 |
| ApoI | RAATTY | 6 cut(s) | 530, 935, 1110, 1561, 2014, 3034 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1795 |
| AspA2I | CCTAGG | 1 cut(s) | 2777 |
| AspLEI | GCGC | 1 cut(s) | 247 |
| AsuC2I | CCSGG | 5 cut(s) | 151, 386, 387, 3338, 3382 |
| AsuHPI | GGTGA | 6 cut(s) | 983, 1133, 1177, 1625, 1871, 2243 |
| AsuII | TTCGAA | 2 cut(s) | 1886, 2986 |
| AvaI | CYCGRG | 1 cut(s) | 385 |
| AvaII | GGWCC | 8 cut(s) | 34, 66, 394, 953, 2535, 2720, 2813, 3023 |
| AvrII | CCTAGG | 1 cut(s) | 2777 |
| BaeGI | GKGCMC | 2 cut(s) | 147, 886 |
| BanII | GRGCYC | 3 cut(s) | 293, 2364, 3007 |
| BauI | CACGAG | 2 cut(s) | 913, 2385 |
| BbrPI | CACGTG | 2 cut(s) | 2396, 2549 |
| BbsI | GAAGAC | 5 cut(s) | 278, 1034, 1143, 1965, 2611 |
| Bbv12I | GWGCWC | 7 cut(s) | 147, 158, 293, 730, 886, 1224, 2364 |
| BbvI | GCAGC | 3 cut(s) | 1247, 1300, 2672 |
| BciT130I | CCWGG | 2 cut(s) | 322, 2333 |
| BclI | TGATCA | 1 cut(s) | 1474 |
| BcnI | CCSGG | 5 cut(s) | 151, 386, 387, 3338, 3382 |
| BcoDI | GTCTC | 4 cut(s) | 1710, 2791, 3128, 3371 |
| BcuI | ACTAGT | 2 cut(s) | 1510, 3362 |
| BfmI | CTRYAG | 2 cut(s) | 1161, 1362 |
| BfuAI | ACCTGC | 1 cut(s) | 1033 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 322, 334, 2911 |
| BglII | AGATCT | 1 cut(s) | 1456 |
| BisI | GCNGC | 7 cut(s) | 326, 849, 1236, 1314, 1572, 2661, 2906 |
| BlnI | CCTAGG | 1 cut(s) | 2777 |
| BlsI | GCNGC | 7 cut(s) | 327, 850, 1237, 1315, 1573, 2662, 2907 |
| Bme1390I | CCNGG | 7 cut(s) | 151, 322, 386, 387, 2333, 3338, 3382 |
| Bme18I | GGWCC | 8 cut(s) | 34, 66, 394, 953, 2535, 2720, 2813, 3023 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1972 |
| BmeT110I | CYCGRG | 1 cut(s) | 385 |
| BmiI | GGNNCC | 8 cut(s) | 36, 395, 396, 641, 1657, 2065, 2536, 2537 |
| BmrFI | CCNGG | 7 cut(s) | 151, 322, 386, 387, 2333, 3338, 3382 |
| BmrI | ACTGGG | 4 cut(s) | 58, 462, 608, 1755 |
| BmuI | ACTGGG | 4 cut(s) | 58, 462, 608, 1755 |
| BoxI | GACNNNNGTC | 1 cut(s) | 951 |
| BpiI | GAAGAC | 5 cut(s) | 278, 1034, 1143, 1965, 2611 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 2368, 2400, 3157, 3189, 3178, 3210 |
| BpmI | CTGGAG | 4 cut(s) | 1734, 2100, 2496, 2580 |
| Bpu14I | TTCGAA | 2 cut(s) | 1886, 2986 |
| BpuEI | CTTGAG | 1 cut(s) | 2059 |
| BpuMI | CCSGG | 5 cut(s) | 151, 386, 387, 3338, 3382 |
| BsaAI | YACGTR | 2 cut(s) | 2396, 2549 |
| BsaI | GGTCTC | 2 cut(s) | 1710, 3371 |
| BsaWI | WCCGGW | 2 cut(s) | 433, 553 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 587, 617 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 391, 502, 649, 822, 1301, 2531, 3344 |
| Bse118I | RCCGGY | 1 cut(s) | 18 |
| Bse1I | ACTGG | 7 cut(s) | 53, 457, 614, 1046, 1354, 1761, 2915 |
| Bse3DI | GCAATG | 3 cut(s) | 2219, 2410, 2758 |
| BseAI | TCCGGA | 1 cut(s) | 433 |
| BseBI | CCWGG | 2 cut(s) | 322, 2333 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 391, 502, 649, 822, 1301, 2531, 3344 |
| BseMI | GCAATG | 3 cut(s) | 2219, 2410, 2758 |
| BseNI | ACTGG | 7 cut(s) | 53, 457, 614, 1046, 1354, 1761, 2915 |
| BseRI | GAGGAG | 3 cut(s) | 374, 1428, 2897 |
| BseSI | GKGCMC | 2 cut(s) | 147, 886 |
| BseXI | GCAGC | 3 cut(s) | 1247, 1300, 2672 |
| BseYI | CCCAGC | 1 cut(s) | 2171 |
| BsgI | GTGCAG | 3 cut(s) | 1254, 2283, 2333 |
| Bsh1236I | CGCG | 1 cut(s) | 1099 |
| Bsh1285I | CGRYCG | 1 cut(s) | 14 |
| BshFI | GGCC | 6 cut(s) | 328, 642, 766, 1149, 2066, 3356 |
| BsiEI | CGRYCG | 1 cut(s) | 14 |
| BsiHKAI | GWGCWC | 7 cut(s) | 147, 158, 293, 730, 886, 1224, 2364 |
| BsiHKCI | CYCGRG | 1 cut(s) | 385 |
| BslFI | GGGAC | 7 cut(s) | 407, 446, 518, 646, 823, 1979, 2521 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 391, 502, 649, 822, 1301, 2531, 3344 |
| BsmAI | GTCTC | 4 cut(s) | 1710, 2791, 3128, 3371 |
| BsmFI | GGGAC | 7 cut(s) | 407, 446, 518, 646, 823, 1979, 2521 |
| BsmI | GAATGC | 2 cut(s) | 676, 1432 |
| BsnI | GGCC | 6 cut(s) | 328, 642, 766, 1149, 2066, 3356 |
| Bso31I | GGTCTC | 2 cut(s) | 1710, 3371 |
| BsoBI | CYCGRG | 1 cut(s) | 385 |
| Bsp119I | TTCGAA | 2 cut(s) | 1886, 2986 |
| Bsp1286I | GDGCHC | 8 cut(s) | 147, 158, 293, 730, 886, 1224, 2364, 3007 |
| Bsp13I | TCCGGA | 1 cut(s) | 433 |
| Bsp1407I | TGTACA | 1 cut(s) | 2191 |
| Bsp19I | CCATGG | 2 cut(s) | 1011, 1659 |
| BspANI | GGCC | 6 cut(s) | 328, 642, 766, 1149, 2066, 3356 |
| BspEI | TCCGGA | 1 cut(s) | 433 |
| BspFNI | CGCG | 1 cut(s) | 1099 |
| BspHI | TCATGA | 1 cut(s) | 2050 |
| BspLI | GGNNCC | 8 cut(s) | 36, 395, 396, 641, 1657, 2065, 2536, 2537 |
| BspMI | ACCTGC | 1 cut(s) | 1033 |
| BspPI | GGATC | 9 cut(s) | 1364, 1610, 1679, 1938, 1998, 2152, 2170, 2493, 2659 |
| BspQI | GCTCTTC | 2 cut(s) | 1707, 3201 |
| BspT104I | TTCGAA | 2 cut(s) | 1886, 2986 |
| BspTNI | GGTCTC | 2 cut(s) | 1710, 3371 |
| BsrDI | GCAATG | 3 cut(s) | 2219, 2410, 2758 |
| BsrFI | RCCGGY | 1 cut(s) | 18 |
| BsrGI | TGTACA | 1 cut(s) | 2191 |
| BsrI | ACTGG | 7 cut(s) | 53, 457, 614, 1046, 1354, 1761, 2915 |
| BssAI | RCCGGY | 1 cut(s) | 18 |
| BssSI | CACGAG | 2 cut(s) | 913, 2385 |
| BssT1I | CCWWGG | 6 cut(s) | 966, 1011, 1659, 2058, 2777, 3156 |
| Bst2BI | CACGAG | 2 cut(s) | 913, 2385 |
| Bst2UI | CCWGG | 2 cut(s) | 322, 2333 |
| Bst6I | CTCTTC | 4 cut(s) | 102, 869, 1707, 3201 |
| BstAUI | TGTACA | 1 cut(s) | 2191 |
| BstBAI | YACGTR | 2 cut(s) | 2396, 2549 |
| BstBI | TTCGAA | 2 cut(s) | 1886, 2986 |
| BstC8I | GCNNGC | 5 cut(s) | 571, 788, 2157, 2316, 3334 |
| BstDSI | CCRYGG | 3 cut(s) | 69, 1011, 1659 |
| BstFNI | CGCG | 1 cut(s) | 1099 |
| BstHHI | GCGC | 1 cut(s) | 247 |
| BstMAI | GTCTC | 4 cut(s) | 1710, 2791, 3128, 3371 |
| BstMCI | CGRYCG | 1 cut(s) | 14 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 313, 322, 334, 848, 2216, 2359, 2911, 3333 |
| BstNI | CCWGG | 2 cut(s) | 322, 2333 |
| BstNSI | RCATGY | 6 cut(s) | 374, 1483, 1785, 2192, 3301, 3336 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 951 |
| BstSCI | CCNGG | 7 cut(s) | 149, 320, 384, 385, 2331, 3336, 3380 |
| BstSFI | CTRYAG | 2 cut(s) | 1161, 1362 |
| BstSLI | GKGCMC | 2 cut(s) | 147, 886 |
| BstUI | CGCG | 1 cut(s) | 1099 |
| BstV1I | GCAGC | 3 cut(s) | 1247, 1300, 2672 |
| BstV2I | GAAGAC | 5 cut(s) | 278, 1034, 1143, 1965, 2611 |
| BstX2I | RGATCY | 6 cut(s) | 1356, 1456, 1684, 2003, 2144, 2651 |
| BstYI | RGATCY | 6 cut(s) | 1356, 1456, 1684, 2003, 2144, 2651 |
| BsuRI | GGCC | 6 cut(s) | 328, 642, 766, 1149, 2066, 3356 |
| BtgI | CCRYGG | 3 cut(s) | 69, 1011, 1659 |
| BtgZI | GCGATG | 1 cut(s) | 1614 |
| BtsI | GCAGTG | 2 cut(s) | 1827, 2165 |
| BtsIMutI | CAGTG | 8 cut(s) | 906, 1772, 1827, 2094, 2165, 2722, 2908, 3303 |
| BveI | ACCTGC | 1 cut(s) | 1033 |
| Cac8I | GCNNGC | 5 cut(s) | 571, 788, 2157, 2316, 3334 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3065 |
| CciI | TCATGA | 1 cut(s) | 2050 |
| CfoI | GCGC | 1 cut(s) | 247 |
| Cfr10I | RCCGGY | 1 cut(s) | 18 |
| Cfr9I | CCCGGG | 1 cut(s) | 385 |
| CseI | GACGC | 2 cut(s) | 2397, 2877 |
| Csp6I | GTAC | 8 cut(s) | 1508, 2192, 2381, 2390, 2463, 2666, 2765, 2826 |
| CviQI | GTAC | 8 cut(s) | 1508, 2192, 2381, 2390, 2463, 2666, 2765, 2826 |
| DraIII | CACNNNGTG | 2 cut(s) | 153, 2309 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1972 |
| EaeI | YGGCCR | 1 cut(s) | 1147 |
| Eam1104I | CTCTTC | 4 cut(s) | 102, 869, 1707, 3201 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1972 |
| EarI | CTCTTC | 4 cut(s) | 102, 869, 1707, 3201 |
| EciI | GGCGGA | 2 cut(s) | 294, 3342 |
| Ecl136II | GAGCTC | 2 cut(s) | 291, 2362 |
| Eco130I | CCWWGG | 6 cut(s) | 966, 1011, 1659, 2058, 2777, 3156 |
| Eco147I | AGGCCT | 1 cut(s) | 3356 |
| Eco24I | GRGCYC | 3 cut(s) | 293, 2364, 3007 |
| Eco31I | GGTCTC | 2 cut(s) | 1710, 3371 |
| Eco47I | GGWCC | 8 cut(s) | 34, 66, 394, 953, 2535, 2720, 2813, 3023 |
| Eco53kI | GAGCTC | 2 cut(s) | 291, 2362 |
| Eco57I | CTGAAG | 7 cut(s) | 8, 1151, 1302, 1731, 2124, 3087, 3182 |
| Eco72I | CACGTG | 2 cut(s) | 2396, 2549 |
| Eco88I | CYCGRG | 1 cut(s) | 385 |
| EcoICRI | GAGCTC | 2 cut(s) | 291, 2362 |
| EcoO109I | RGGNCCY | 2 cut(s) | 394, 2535 |
| EcoRII | CCWGG | 2 cut(s) | 320, 2331 |
| EcoT14I | CCWWGG | 6 cut(s) | 966, 1011, 1659, 2058, 2777, 3156 |
| EcoT22I | ATGCAT | 3 cut(s) | 676, 2620, 2950 |
| EcoT38I | GRGCYC | 3 cut(s) | 293, 2364, 3007 |
| ErhI | CCWWGG | 6 cut(s) | 966, 1011, 1659, 2058, 2777, 3156 |
| FaqI | GGGAC | 7 cut(s) | 407, 446, 518, 646, 823, 1979, 2521 |
| FauI | CCCGC | 2 cut(s) | 45, 383 |
| FauNDI | CATATG | 1 cut(s) | 2878 |
| FbaI | TGATCA | 1 cut(s) | 1474 |
| FblI | GTMKAC | 3 cut(s) | 449, 757, 1050 |
| Fnu4HI | GCNGC | 7 cut(s) | 326, 849, 1236, 1314, 1572, 2661, 2906 |
| FriOI | GRGCYC | 3 cut(s) | 293, 2364, 3007 |
| Fsp4HI | GCNGC | 7 cut(s) | 326, 849, 1236, 1314, 1572, 2661, 2906 |
| FspI | TGCGCA | 1 cut(s) | 246 |
| GlaI | GCGC | 1 cut(s) | 246 |
| GluI | GCNGC | 7 cut(s) | 326, 849, 1236, 1314, 1572, 2661, 2906 |
| GsaI | CCCAGC | 1 cut(s) | 2175 |
| GsuI | CTGGAG | 4 cut(s) | 1734, 2100, 2496, 2580 |
| HaeIII | GGCC | 6 cut(s) | 328, 642, 766, 1149, 2066, 3356 |
| HgaI | GACGC | 2 cut(s) | 2397, 2877 |
| HhaI | GCGC | 1 cut(s) | 247 |
| Hin6I | GCGC | 1 cut(s) | 245 |
| HinP1I | GCGC | 1 cut(s) | 245 |
| HincII | GTYRAC | 2 cut(s) | 55, 1625 |
| HindII | GTYRAC | 2 cut(s) | 55, 1625 |
| HpaI | GTTAAC | 1 cut(s) | 55 |
| HphI | GGTGA | 6 cut(s) | 983, 1133, 1177, 1625, 1871, 2243 |
| Hpy188III | TCNNGA | 9 cut(s) | 434, 1709, 2051, 2142, 2357, 2475, 2538, 2597, 2975 |
| Hpy99I | CGWCG | 3 cut(s) | 128, 271, 3257 |
| HpyCH4IV | ACGT | 6 cut(s) | 1280, 2395, 2450, 2548, 3181, 3389 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 313, 322, 334, 848, 2216, 2359, 2911, 3333 |
| HpySE526I | ACGT | 6 cut(s) | 1280, 2395, 2450, 2548, 3181, 3389 |
| HspAI | GCGC | 1 cut(s) | 245 |
| KflI | GGGWCCC | 2 cut(s) | 394, 2535 |
| Kpn2I | TCCGGA | 1 cut(s) | 433 |
| Ksp22I | TGATCA | 1 cut(s) | 1474 |
| KspAI | GTTAAC | 1 cut(s) | 55 |
| LguI | GCTCTTC | 2 cut(s) | 1707, 3201 |
| LmnI | GCTCC | 3 cut(s) | 436, 2884, 3329 |
| Lsp1109I | GCAGC | 3 cut(s) | 1247, 1300, 2672 |
| MaeII | ACGT | 6 cut(s) | 1280, 2395, 2450, 2548, 3181, 3389 |
| MaeIII | GTNAC | 5 cut(s) | 774, 971, 1532, 1943, 2327 |
| MfeI | CAATTG | 4 cut(s) | 118, 929, 1116, 2423 |
| MflI | RGATCY | 6 cut(s) | 1356, 1456, 1684, 2003, 2144, 2651 |
| MhlI | GDGCHC | 8 cut(s) | 147, 158, 293, 730, 886, 1224, 2364, 3007 |
| MluI | ACGCGT | 1 cut(s) | 1097 |
| MlyI | GAGTC | 1 cut(s) | 1046 |
| MmeI | TCCRAC | 4 cut(s) | 290, 1263, 3096, 3244 |
| Mph1103I | ATGCAT | 3 cut(s) | 676, 2620, 2950 |
| MroI | TCCGGA | 1 cut(s) | 433 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1795 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1227, 1446, 2453 |
| MspA1I | CMGCKG | 3 cut(s) | 851, 1238, 2663 |
| MspR9I | CCNGG | 7 cut(s) | 151, 322, 386, 387, 2333, 3338, 3382 |
| MunI | CAATTG | 4 cut(s) | 118, 929, 1116, 2423 |
| Mva1269I | GAATGC | 2 cut(s) | 676, 1432 |
| MvaI | CCWGG | 2 cut(s) | 322, 2333 |
| MvnI | CGCG | 1 cut(s) | 1099 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 313, 322, 334, 848, 2216, 2359, 2911, 3333 |
| NciI | CCSGG | 5 cut(s) | 151, 386, 387, 3338, 3382 |
| NcoI | CCATGG | 2 cut(s) | 1011, 1659 |
| NdeI | CATATG | 1 cut(s) | 2878 |
| NlaIV | GGNNCC | 8 cut(s) | 36, 395, 396, 641, 1657, 2065, 2536, 2537 |
| NmuCI | GTSAC | 4 cut(s) | 971, 1532, 1943, 2327 |
| NsbI | TGCGCA | 1 cut(s) | 246 |
| NsiI | ATGCAT | 3 cut(s) | 676, 2620, 2950 |
| NspI | RCATGY | 6 cut(s) | 374, 1483, 1785, 2192, 3301, 3336 |
| NspV | TTCGAA | 2 cut(s) | 1886, 2986 |
| PaeI | GCATGC | 1 cut(s) | 3336 |
| PagI | TCATGA | 1 cut(s) | 2050 |
| PceI | AGGCCT | 1 cut(s) | 3356 |
| PciI | ACATGT | 2 cut(s) | 1479, 2188 |
| PciSI | GCTCTTC | 2 cut(s) | 1707, 3201 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 132, 2392 |
| PctI | GAATGC | 2 cut(s) | 676, 1432 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1795 |
| PflFI | GACNNNGTC | 1 cut(s) | 1142 |
| PkrI | GCNGC | 7 cut(s) | 327, 850, 1237, 1315, 1573, 2662, 2907 |
| PleI | GAGTC | 1 cut(s) | 1046 |
| PmaCI | CACGTG | 2 cut(s) | 2396, 2549 |
| PmlI | CACGTG | 2 cut(s) | 2396, 2549 |
| PpsI | GAGTC | 1 cut(s) | 1046 |
| Ppu21I | YACGTR | 2 cut(s) | 2396, 2549 |
| PpuMI | RGGWCCY | 2 cut(s) | 394, 2535 |
| PscI | ACATGT | 2 cut(s) | 1479, 2188 |
| PshAI | GACNNNNGTC | 1 cut(s) | 951 |
| Psp124BI | GAGCTC | 2 cut(s) | 293, 2364 |
| Psp5II | RGGWCCY | 2 cut(s) | 394, 2535 |
| Psp6I | CCWGG | 2 cut(s) | 320, 2331 |
| PspCI | CACGTG | 2 cut(s) | 2396, 2549 |
| PspFI | CCCAGC | 1 cut(s) | 2171 |
| PspGI | CCWGG | 2 cut(s) | 320, 2331 |
| PspN4I | GGNNCC | 8 cut(s) | 36, 395, 396, 641, 1657, 2065, 2536, 2537 |
| PspPPI | RGGWCCY | 2 cut(s) | 394, 2535 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 476, 508, 2382, 2414 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3065 |
| PsuI | RGATCY | 6 cut(s) | 1356, 1456, 1684, 2003, 2144, 2651 |
| PsyI | GACNNNGTC | 1 cut(s) | 1142 |
| PvuII | CAGCTG | 1 cut(s) | 1238 |
| RsaI | GTAC | 8 cut(s) | 1509, 2193, 2382, 2391, 2464, 2667, 2766, 2827 |
| RsaNI | GTAC | 8 cut(s) | 1508, 2192, 2381, 2390, 2463, 2666, 2765, 2826 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1227, 1446, 2453 |
| SacI | GAGCTC | 2 cut(s) | 293, 2364 |
| SapI | GCTCTTC | 2 cut(s) | 1707, 3201 |
| SatI | GCNGC | 7 cut(s) | 326, 849, 1236, 1314, 1572, 2661, 2906 |
| SchI | GAGTC | 1 cut(s) | 1046 |
| ScrFI | CCNGG | 7 cut(s) | 151, 322, 386, 387, 2333, 3338, 3382 |
| SduI | GDGCHC | 8 cut(s) | 147, 158, 293, 730, 886, 1224, 2364, 3007 |
| SfcI | CTRYAG | 2 cut(s) | 1161, 1362 |
| SfuI | TTCGAA | 2 cut(s) | 1886, 2986 |
| SinI | GGWCC | 8 cut(s) | 34, 66, 394, 953, 2535, 2720, 2813, 3023 |
| SmaI | CCCGGG | 1 cut(s) | 387 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1227, 1446, 2453 |
| SmlI | CTYRAG | 1 cut(s) | 2038 |
| SmoI | CTYRAG | 1 cut(s) | 2038 |
| SpeI | ACTAGT | 2 cut(s) | 1510, 3362 |
| SphI | GCATGC | 1 cut(s) | 3336 |
| SseBI | AGGCCT | 1 cut(s) | 3356 |
| SspI | AATATT | 2 cut(s) | 1343, 2686 |
| SstI | GAGCTC | 2 cut(s) | 293, 2364 |
| StuI | AGGCCT | 1 cut(s) | 3356 |
| StyD4I | CCNGG | 7 cut(s) | 149, 320, 384, 385, 2331, 3336, 3380 |
| StyI | CCWWGG | 6 cut(s) | 966, 1011, 1659, 2058, 2777, 3156 |
| TaiI | ACGT | 6 cut(s) | 1283, 2398, 2453, 2551, 3184, 3392 |
| TaqI | TCGA | 5 cut(s) | 1886, 2602, 2986, 2992, 3175 |
| TaqII | GACCGA | 1 cut(s) | 2485 |
| TatI | WGTACW | 1 cut(s) | 2191 |
| TauI | GCSGC | 4 cut(s) | 328, 851, 1574, 2908 |
| TscAI | CASTG | 8 cut(s) | 906, 1772, 1827, 2094, 2172, 2722, 2915, 3310 |
| TseFI | GTSAC | 4 cut(s) | 971, 1532, 1943, 2327 |
| TseI | GCWGC | 3 cut(s) | 1235, 1313, 2660 |
| Tsp45I | GTSAC | 4 cut(s) | 971, 1532, 1943, 2327 |
| TspMI | CCCGGG | 1 cut(s) | 385 |
| TspRI | CASTG | 8 cut(s) | 906, 1772, 1827, 2094, 2172, 2722, 2915, 3310 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1142 |
| VneI | GTGCAC | 2 cut(s) | 143, 882 |
| VpaK11BI | GGWCC | 8 cut(s) | 34, 66, 394, 953, 2535, 2720, 2813, 3023 |
| XapI | RAATTY | 6 cut(s) | 530, 935, 1110, 1561, 2014, 3034 |
| XceI | RCATGY | 6 cut(s) | 374, 1483, 1785, 2192, 3301, 3336 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1544, 1696 |
| XmaI | CCCGGG | 1 cut(s) | 385 |
| XmaJI | CCTAGG | 1 cut(s) | 2777 |
| XmiI | GTMKAC | 3 cut(s) | 449, 757, 1050 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1795 |
| Zsp2I | ATGCAT | 3 cut(s) | 676, 2620, 2950 |