Rorug06G0482300

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
60311300 .. 60311578
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0482300.1

Sequence Viewer

Length: 279 bp
ATGGTTTCAAGGTTTGAGTTGGGTATGGTTCCTAACTCCTTAATTGAGCTTTTTCATTTGGGACTTGGTGGTCGTAGCCCTCAATTGAAGGATTTATGGCTTGCTTGTTACACTTCAGTTCTATGGTTTATCTGGCAAGCTAGAAACAAGACAAGATTTGATGGAGTAGTAGCACATGCTACGTGTTTGGCTCCAATTTTGTTGCAGCTGGTCAACAGTCTCTTTTCTGCGCGGGCGTGCCAGCACCGTTCGGGTGCGGTCGTCGGGGGTGTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

92

Amino Acids

10.14

Weight (kDa)

9.49

Isoelectric Point (pI)

65.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013452)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 69
AccII CGCG 1 cut(s) 232
AciI CCGC 2 cut(s) 232, 257
AcuI CTGAAG 1 cut(s) 99
AflIII ACRYGT 1 cut(s) 182
AgsI TTSAA 2 cut(s) 9, 88
AluBI AGCT 3 cut(s) 49, 140, 208
AluI AGCT 3 cut(s) 49, 140, 208
Alw26I GTCTC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 205
AspLEI GCGC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 217
BccI CCATC 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 1 cut(s) 141
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
BmiI GGNNCC 2 cut(s) 30, 192
BsaAI YACGTR 1 cut(s) 183
BseXI GCAGC 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 232
Bsh1285I CGRYCG 1 cut(s) 261
BsiEI CGRYCG 1 cut(s) 261
BslFI GGGAC 2 cut(s) 75, 257
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 2 cut(s) 75, 257
BspACI CCGC 2 cut(s) 232, 257
BspFNI CGCG 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 30, 192
Bst4CI ACNGT 2 cut(s) 218, 248
BstBAI YACGTR 1 cut(s) 183
BstC8I GCNNGC 5 cut(s) 102, 138, 234, 238, 242
BstFNI CGCG 1 cut(s) 232
BstHHI GCGC 1 cut(s) 232
BstMAI GTCTC 1 cut(s) 224
BstMCI CGRYCG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 179
BstUI CGCG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 217
Cac8I GCNNGC 5 cut(s) 102, 138, 234, 238, 242
CfoI GCGC 1 cut(s) 232
CviAII CATG 1 cut(s) 176
CviJI RGCY 6 cut(s) 49, 78, 100, 140, 191, 208
CviKI_1 RGCY 6 cut(s) 49, 78, 100, 140, 191, 208
DrdI GACNNNNNNGTC 1 cut(s) 69
DseDI GACNNNNNNGTC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 99
FaeI CATG 1 cut(s) 179
FaiI YATR 4 cut(s) 26, 97, 124, 177
FaqI GGGAC 2 cut(s) 75, 257
FatI CATG 1 cut(s) 175
FauI CCCGC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 206
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 206
HhaI GCGC 1 cut(s) 232
Hin1II CATG 1 cut(s) 179
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 214
Hpy8I GTNNAC 1 cut(s) 214
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 2 cut(s) 218, 248
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 1 cut(s) 205
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 1 cut(s) 179
HspAI GCGC 1 cut(s) 230
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 3 cut(s) 118, 194, 254
Lsp1109I GCAGC 1 cut(s) 217
MaeI CTAG 1 cut(s) 141
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 1 cut(s) 107
MfeI CAATTG 1 cut(s) 83
MluCI AATT 3 cut(s) 42, 83, 195
MnlI CCTC 1 cut(s) 90
MseI TTAA 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 208
MunI CAATTG 1 cut(s) 83
MvnI CGCG 1 cut(s) 232
NlaIII CATG 1 cut(s) 179
NlaIV GGNNCC 2 cut(s) 30, 192
NspI RCATGY 1 cut(s) 179
PkrI GCNGC 1 cut(s) 207
Ppu21I YACGTR 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 30, 192
PvuII CAGCTG 1 cut(s) 208
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 1 cut(s) 206
SetI ASST 5 cut(s) 14, 51, 142, 185, 210
Sse9I AATT 3 cut(s) 42, 83, 195
SsiI CCGC 2 cut(s) 232, 257
SspMI CTAG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 218, 248
TaiI ACGT 1 cut(s) 185
TasI AATT 3 cut(s) 42, 83, 195
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseI GCWGC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 44
XceI RCATGY 1 cut(s) 179
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.