WD40 repeats
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G50970 |
| fragaria_vesca | FvH4_5g09480 |
| malus_domestica | MD06G1130900.v1.1 MD14G1147500.v1.1 |
| prunus_persica | Prupe.5G142100_v2.0.a1 Prupe.5G142100_v2.0.a1 Prupe.5G142100_v2.0.a1 Prupe.5G142100_v2.0.a1 Prupe.5G142100_v2.0.a1 Prupe.5G142100_v2.0.a1 |
| pyrus_communis | pycom06g12250 pycom14g12220 |
| rosa_chinensis | RchiOBHm_Chr1g0373351 RchiOBHm_Chr7g0188721 |
| rosa_laevigata | RLG00000004667 |
| rosa_multiflora | Rmu_sc0003854.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00266100 |
| rosa_rugosa | Rorug06G0493100 |
| rosa_samantha | Rh2BG475900 Rh2DG440100 Rh2DG484600 Rh7AG097900 Rh7DG099700 |
| rosa_wichuraiana | Rw7G008430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1511 |
| AccB1I | GGYRCC | 2 cut(s) | 903, 1511 |
| AccII | CGCG | 3 cut(s) | 175, 177, 201 |
| AciI | CCGC | 3 cut(s) | 78, 1230, 1515 |
| AclWI | GGATC | 2 cut(s) | 1046, 1514 |
| AcoI | YGGCCR | 1 cut(s) | 884 |
| AcsI | RAATTY | 1 cut(s) | 620 |
| AcuI | CTGAAG | 1 cut(s) | 35 |
| AcyI | GRCGYC | 1 cut(s) | 280 |
| AfaI | GTAC | 4 cut(s) | 172, 664, 853, 1513 |
| AfeI | AGCGCT | 1 cut(s) | 7 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 320, 928, 1066 |
| AgsI | TTSAA | 6 cut(s) | 579, 593, 599, 626, 1288, 1358 |
| AjnI | CCWGG | 2 cut(s) | 899, 1064 |
| AluBI | AGCT | 7 cut(s) | 223, 669, 998, 1381, 1463, 1583, 1607 |
| AluI | AGCT | 7 cut(s) | 223, 669, 998, 1381, 1463, 1583, 1607 |
| Alw21I | GWGCWC | 2 cut(s) | 502, 1585 |
| Alw26I | GTCTC | 3 cut(s) | 208, 1118, 1488 |
| AlwI | GGATC | 2 cut(s) | 1046, 1514 |
| Ama87I | CYCGRG | 1 cut(s) | 313 |
| Aor51HI | AGCGCT | 1 cut(s) | 7 |
| AoxI | GGCC | 2 cut(s) | 819, 884 |
| ApeKI | GCWGC | 6 cut(s) | 71, 74, 80, 83, 233, 1378 |
| ApoI | RAATTY | 1 cut(s) | 620 |
| AseI | ATTAAT | 1 cut(s) | 647 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 574, 648, 742 |
| Asp718I | GGTACC | 1 cut(s) | 1511 |
| AspLEI | GCGC | 3 cut(s) | 8, 177, 201 |
| AspS9I | GGNCC | 1 cut(s) | 1365 |
| AsuC2I | CCSGG | 2 cut(s) | 314, 315 |
| AsuHPI | GGTGA | 3 cut(s) | 179, 666, 962 |
| AvaI | CYCGRG | 1 cut(s) | 313 |
| AvaII | GGWCC | 1 cut(s) | 1365 |
| AxyI | CCTNAGG | 1 cut(s) | 909 |
| BaeGI | GKGCMC | 1 cut(s) | 755 |
| BalI | TGGCCA | 1 cut(s) | 886 |
| BanI | GGYRCC | 2 cut(s) | 903, 1511 |
| BanII | GRGCYC | 1 cut(s) | 1585 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 655, 687 |
| BauI | CACGAG | 1 cut(s) | 999 |
| Bbv12I | GWGCWC | 2 cut(s) | 502, 1585 |
| BbvI | GCAGC | 6 cut(s) | 83, 86, 92, 95, 245, 1390 |
| BccI | CCATC | 4 cut(s) | 520, 785, 876, 1484 |
| BceAI | ACGGC | 1 cut(s) | 127 |
| BciT130I | CCWGG | 2 cut(s) | 901, 1066 |
| BclI | TGATCA | 2 cut(s) | 763, 1099 |
| BcnI | CCSGG | 2 cut(s) | 314, 315 |
| BcoDI | GTCTC | 3 cut(s) | 208, 1118, 1488 |
| BfaI | CTAG | 4 cut(s) | 387, 471, 495, 666 |
| BfmI | CTRYAG | 1 cut(s) | 934 |
| BfoI | RGCGCY | 1 cut(s) | 9 |
| BisI | GCNGC | 7 cut(s) | 72, 75, 78, 81, 84, 234, 1379 |
| BlsI | GCNGC | 7 cut(s) | 73, 76, 79, 82, 85, 235, 1380 |
| BmcAI | AGTACT | 1 cut(s) | 853 |
| Bme1390I | CCNGG | 4 cut(s) | 314, 315, 901, 1066 |
| Bme18I | GGWCC | 1 cut(s) | 1365 |
| BmeT110I | CYCGRG | 1 cut(s) | 313 |
| BmgT120I | GGNCC | 1 cut(s) | 1365 |
| BmiI | GGNNCC | 7 cut(s) | 345, 483, 905, 1366, 1367, 1513, 1616 |
| BmrFI | CCNGG | 4 cut(s) | 314, 315, 901, 1066 |
| BmrI | ACTGGG | 1 cut(s) | 749 |
| BmsI | GCATC | 5 cut(s) | 175, 872, 1120, 1252, 1300 |
| BmuI | ACTGGG | 1 cut(s) | 749 |
| BpmI | CTGGAG | 3 cut(s) | 468, 1254, 1470 |
| BpuEI | CTTGAG | 2 cut(s) | 245, 942 |
| BpuMI | CCSGG | 2 cut(s) | 314, 315 |
| BsaAI | YACGTR | 1 cut(s) | 1680 |
| BsaHI | GRCGYC | 1 cut(s) | 280 |
| BsaI | GGTCTC | 1 cut(s) | 1488 |
| BsaJI | CCNNGG | 5 cut(s) | 312, 313, 1064, 1065, 1151 |
| BsaWI | WCCGGW | 2 cut(s) | 687, 1508 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 320, 928, 1066 |
| Bse1I | ACTGG | 6 cut(s) | 485, 507, 522, 755, 780, 1093 |
| Bse21I | CCTNAGG | 1 cut(s) | 909 |
| Bse3DI | GCAATG | 1 cut(s) | 1157 |
| BseBI | CCWGG | 2 cut(s) | 901, 1066 |
| BseDI | CCNNGG | 5 cut(s) | 312, 313, 1064, 1065, 1151 |
| BseGI | GGATG | 4 cut(s) | 796, 863, 1209, 1505 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 320, 928, 1066 |
| BseMI | GCAATG | 1 cut(s) | 1157 |
| BseMII | CTCAG | 5 cut(s) | 233, 900, 1125, 1394, 1469 |
| BseNI | ACTGG | 6 cut(s) | 485, 507, 522, 755, 780, 1093 |
| BseSI | GKGCMC | 1 cut(s) | 755 |
| BseXI | GCAGC | 6 cut(s) | 83, 86, 92, 95, 245, 1390 |
| BseYI | CCCAGC | 1 cut(s) | 1199 |
| Bsh1236I | CGCG | 3 cut(s) | 175, 177, 201 |
| BshFI | GGCC | 2 cut(s) | 821, 886 |
| BshNI | GGYRCC | 2 cut(s) | 903, 1511 |
| BsiHKAI | GWGCWC | 2 cut(s) | 502, 1585 |
| BsiHKCI | CYCGRG | 1 cut(s) | 313 |
| BsiSI | CCGG | 3 cut(s) | 314, 688, 1509 |
| BsiWI | CGTACG | 1 cut(s) | 170 |
| BslFI | GGGAC | 3 cut(s) | 569, 622, 1378 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 320, 928, 1066 |
| BsmAI | GTCTC | 3 cut(s) | 208, 1118, 1488 |
| BsmBI | CGTCTC | 1 cut(s) | 208 |
| BsmFI | GGGAC | 3 cut(s) | 569, 622, 1378 |
| BsmI | GAATGC | 1 cut(s) | 1174 |
| BsnI | GGCC | 2 cut(s) | 821, 886 |
| Bso31I | GGTCTC | 1 cut(s) | 1488 |
| BsoBI | CYCGRG | 1 cut(s) | 313 |
| Bsp1286I | GDGCHC | 3 cut(s) | 502, 755, 1585 |
| Bsp143I | GATC | 6 cut(s) | 350, 763, 1038, 1099, 1519, 1651 |
| BspACI | CCGC | 3 cut(s) | 78, 1230, 1515 |
| BspANI | GGCC | 2 cut(s) | 821, 886 |
| BspCNI | CTCAG | 5 cut(s) | 232, 901, 1126, 1395, 1468 |
| BspFNI | CGCG | 3 cut(s) | 175, 177, 201 |
| BspLI | GGNNCC | 7 cut(s) | 345, 483, 905, 1366, 1367, 1513, 1616 |
| BspPI | GGATC | 2 cut(s) | 1046, 1514 |
| BspQI | GCTCTTC | 2 cut(s) | 676, 1270 |
| BspT107I | GGYRCC | 2 cut(s) | 903, 1511 |
| BspTNI | GGTCTC | 1 cut(s) | 1488 |
| BsrDI | GCAATG | 1 cut(s) | 1157 |
| BsrI | ACTGG | 6 cut(s) | 485, 507, 522, 755, 780, 1093 |
| BssECI | CCNNGG | 5 cut(s) | 312, 313, 1064, 1065, 1151 |
| BssMI | GATC | 6 cut(s) | 350, 763, 1038, 1099, 1519, 1651 |
| BssNI | GRCGYC | 1 cut(s) | 280 |
| BssSI | CACGAG | 1 cut(s) | 999 |
| BssT1I | CCWWGG | 1 cut(s) | 1151 |
| Bst2BI | CACGAG | 1 cut(s) | 999 |
| Bst2UI | CCWGG | 2 cut(s) | 901, 1066 |
| Bst6I | CTCTTC | 4 cut(s) | 99, 676, 1270, 1352 |
| BstACI | GRCGYC | 1 cut(s) | 280 |
| BstBAI | YACGTR | 1 cut(s) | 1680 |
| BstC8I | GCNNGC | 2 cut(s) | 197, 700 |
| BstDEI | CTNAG | 8 cut(s) | 219, 261, 845, 909, 1012, 1134, 1403, 1455 |
| BstF5I | GGATG | 4 cut(s) | 796, 863, 1209, 1505 |
| BstFNI | CGCG | 3 cut(s) | 175, 177, 201 |
| BstH2I | RGCGCY | 1 cut(s) | 9 |
| BstHHI | GCGC | 3 cut(s) | 8, 177, 201 |
| BstKTI | GATC | 6 cut(s) | 353, 766, 1041, 1102, 1522, 1654 |
| BstMAI | GTCTC | 3 cut(s) | 208, 1118, 1488 |
| BstMBI | GATC | 6 cut(s) | 350, 763, 1038, 1099, 1519, 1651 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 77, 80, 83, 152, 172, 699 |
| BstNI | CCWGG | 2 cut(s) | 901, 1066 |
| BstNSI | RCATGY | 1 cut(s) | 1424 |
| BstSCI | CCNGG | 4 cut(s) | 312, 313, 899, 1064 |
| BstSFI | CTRYAG | 1 cut(s) | 934 |
| BstSLI | GKGCMC | 1 cut(s) | 755 |
| BstUI | CGCG | 3 cut(s) | 175, 177, 201 |
| BstV1I | GCAGC | 6 cut(s) | 83, 86, 92, 95, 245, 1390 |
| BstX2I | RGATCY | 1 cut(s) | 1519 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 787 |
| BstYI | RGATCY | 1 cut(s) | 1519 |
| Bsu36I | CCTNAGG | 1 cut(s) | 909 |
| BsuRI | GGCC | 2 cut(s) | 821, 886 |
| BtsCI | GGATG | 4 cut(s) | 796, 863, 1209, 1505 |
| BtsI | GCAGTG | 1 cut(s) | 1453 |
| BtsIMutI | CAGTG | 4 cut(s) | 762, 787, 1086, 1453 |
| Cac8I | GCNNGC | 2 cut(s) | 197, 700 |
| CfoI | GCGC | 3 cut(s) | 8, 177, 201 |
| Cfr13I | GGNCC | 1 cut(s) | 1365 |
| Cfr9I | CCCGGG | 1 cut(s) | 313 |
| CseI | GACGC | 2 cut(s) | 190, 288 |
| Csp6I | GTAC | 4 cut(s) | 171, 663, 852, 1512 |
| CviAII | CATG | 8 cut(s) | 1028, 1103, 1189, 1312, 1351, 1370, 1421, 1525 |
| CviQI | GTAC | 4 cut(s) | 171, 663, 852, 1512 |
| DdeI | CTNAG | 8 cut(s) | 219, 261, 845, 909, 1012, 1134, 1403, 1455 |
| DpnI | GATC | 6 cut(s) | 352, 765, 1040, 1101, 1521, 1653 |
| DpnII | GATC | 6 cut(s) | 350, 763, 1038, 1099, 1519, 1651 |
| DraI | TTTAAA | 2 cut(s) | 972, 1603 |
| EaeI | YGGCCR | 1 cut(s) | 884 |
| Eam1104I | CTCTTC | 4 cut(s) | 99, 676, 1270, 1352 |
| EarI | CTCTTC | 4 cut(s) | 99, 676, 1270, 1352 |
| Ecl136II | GAGCTC | 1 cut(s) | 1583 |
| Eco130I | CCWWGG | 1 cut(s) | 1151 |
| Eco24I | GRGCYC | 1 cut(s) | 1585 |
| Eco31I | GGTCTC | 1 cut(s) | 1488 |
| Eco32I | GATATC | 3 cut(s) | 1396, 1543, 1550 |
| Eco47I | GGWCC | 1 cut(s) | 1365 |
| Eco47III | AGCGCT | 1 cut(s) | 7 |
| Eco53kI | GAGCTC | 1 cut(s) | 1583 |
| Eco57I | CTGAAG | 1 cut(s) | 35 |
| Eco81I | CCTNAGG | 1 cut(s) | 909 |
| Eco88I | CYCGRG | 1 cut(s) | 313 |
| EcoICRI | GAGCTC | 1 cut(s) | 1583 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1365 |
| EcoRII | CCWGG | 2 cut(s) | 899, 1064 |
| EcoRV | GATATC | 3 cut(s) | 1396, 1543, 1550 |
| EcoT14I | CCWWGG | 1 cut(s) | 1151 |
| EcoT22I | ATGCAT | 2 cut(s) | 1176, 1313 |
| EcoT38I | GRGCYC | 1 cut(s) | 1585 |
| ErhI | CCWWGG | 1 cut(s) | 1151 |
| Esp3I | CGTCTC | 1 cut(s) | 208 |
| FaeI | CATG | 8 cut(s) | 1031, 1106, 1192, 1315, 1354, 1373, 1424, 1528 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 579, 611, 730, 762 |
| FaqI | GGGAC | 3 cut(s) | 569, 622, 1378 |
| FatI | CATG | 8 cut(s) | 1027, 1102, 1188, 1311, 1350, 1369, 1420, 1524 |
| FbaI | TGATCA | 2 cut(s) | 763, 1099 |
| Fnu4HI | GCNGC | 7 cut(s) | 72, 75, 78, 81, 84, 234, 1379 |
| FokI | GGATG | 4 cut(s) | 803, 850, 1216, 1492 |
| FriOI | GRGCYC | 1 cut(s) | 1585 |
| Fsp4HI | GCNGC | 7 cut(s) | 72, 75, 78, 81, 84, 234, 1379 |
| FspBI | CTAG | 4 cut(s) | 387, 471, 495, 666 |
| GlaI | GCGC | 3 cut(s) | 7, 176, 200 |
| GluI | GCNGC | 7 cut(s) | 72, 75, 78, 81, 84, 234, 1379 |
| GsaI | CCCAGC | 1 cut(s) | 1203 |
| GsuI | CTGGAG | 3 cut(s) | 468, 1254, 1470 |
| HaeII | RGCGCY | 1 cut(s) | 9 |
| HaeIII | GGCC | 2 cut(s) | 821, 886 |
| HapII | CCGG | 3 cut(s) | 314, 688, 1509 |
| HgaI | GACGC | 2 cut(s) | 190, 288 |
| HhaI | GCGC | 3 cut(s) | 8, 177, 201 |
| Hin1I | GRCGYC | 1 cut(s) | 280 |
| Hin1II | CATG | 8 cut(s) | 1031, 1106, 1192, 1315, 1354, 1373, 1424, 1528 |
| Hin6I | GCGC | 3 cut(s) | 6, 175, 199 |
| HinP1I | GCGC | 3 cut(s) | 6, 175, 199 |
| HincII | GTYRAC | 2 cut(s) | 300, 802 |
| HindII | GTYRAC | 2 cut(s) | 300, 802 |
| HinfI | GANTC | 6 cut(s) | 251, 358, 953, 1194, 1451, 1528 |
| HpaII | CCGG | 3 cut(s) | 314, 688, 1509 |
| HphI | GGTGA | 3 cut(s) | 179, 666, 962 |
| Hpy166II | GTNNAC | 3 cut(s) | 300, 802, 1667 |
| Hpy188I | TCNGA | 9 cut(s) | 256, 1296, 1385, 1400, 1467, 1547, 1590, 1651, 1656 |
| Hpy188III | TCNNGA | 3 cut(s) | 599, 1117, 1487 |
| Hpy8I | GTNNAC | 3 cut(s) | 300, 802, 1667 |
| Hpy99I | CGWCG | 6 cut(s) | 56, 59, 62, 65, 155, 282 |
| HpyAV | CCTTC | 4 cut(s) | 200, 472, 1575, 1640 |
| HpyCH4IV | ACGT | 3 cut(s) | 36, 1269, 1679 |
| HpyCH4V | TGCA | 6 cut(s) | 335, 698, 863, 1162, 1174, 1311 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 77, 80, 83, 152, 172, 699 |
| HpyF3I | CTNAG | 8 cut(s) | 219, 261, 845, 909, 1012, 1134, 1403, 1455 |
| HpySE526I | ACGT | 3 cut(s) | 36, 1269, 1679 |
| Hsp92I | GRCGYC | 1 cut(s) | 280 |
| Hsp92II | CATG | 8 cut(s) | 1031, 1106, 1192, 1315, 1354, 1373, 1424, 1528 |
| HspAI | GCGC | 3 cut(s) | 6, 175, 199 |
| KflI | GGGWCCC | 1 cut(s) | 1365 |
| KpnI | GGTACC | 1 cut(s) | 1515 |
| Ksp22I | TGATCA | 2 cut(s) | 763, 1099 |
| Kzo9I | GATC | 6 cut(s) | 350, 763, 1038, 1099, 1519, 1651 |
| LguI | GCTCTTC | 2 cut(s) | 676, 1270 |
| LmnI | GCTCC | 4 cut(s) | 487, 1235, 1386, 1620 |
| Lsp1109I | GCAGC | 6 cut(s) | 83, 86, 92, 95, 245, 1390 |
| LweI | GCATC | 5 cut(s) | 175, 872, 1120, 1252, 1300 |
| MaeI | CTAG | 4 cut(s) | 387, 471, 495, 666 |
| MaeII | ACGT | 3 cut(s) | 36, 1269, 1679 |
| MaeIII | GTNAC | 4 cut(s) | 775, 1003, 1084, 1334 |
| MalI | GATC | 6 cut(s) | 352, 765, 1040, 1101, 1521, 1653 |
| MboI | GATC | 6 cut(s) | 350, 763, 1038, 1099, 1519, 1651 |
| MflI | RGATCY | 1 cut(s) | 1519 |
| MhlI | GDGCHC | 3 cut(s) | 502, 755, 1585 |
| MlsI | TGGCCA | 1 cut(s) | 886 |
| MluCI | AATT | 6 cut(s) | 420, 458, 620, 644, 648, 1248 |
| MluNI | TGGCCA | 1 cut(s) | 886 |
| MlyI | GAGTC | 2 cut(s) | 367, 1203 |
| MmeI | TCCRAC | 2 cut(s) | 768, 1408 |
| MnlI | CCTC | 8 cut(s) | 158, 220, 234, 408, 599, 904, 1035, 1398 |
| Mox20I | TGGCCA | 1 cut(s) | 886 |
| Mph1103I | ATGCAT | 2 cut(s) | 1176, 1313 |
| MroXI | GAANNNNTTC | 3 cut(s) | 574, 648, 742 |
| MscI | TGGCCA | 1 cut(s) | 886 |
| MseI | TTAA | 8 cut(s) | 245, 371, 419, 647, 971, 1044, 1341, 1602 |
| Msp20I | TGGCCA | 1 cut(s) | 886 |
| MspA1I | CMGCKG | 1 cut(s) | 1232 |
| MspI | CCGG | 3 cut(s) | 314, 688, 1509 |
| MspR9I | CCNGG | 4 cut(s) | 314, 315, 901, 1066 |
| Mva1269I | GAATGC | 1 cut(s) | 1174 |
| MvaI | CCWGG | 2 cut(s) | 901, 1066 |
| MvnI | CGCG | 3 cut(s) | 175, 177, 201 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 77, 80, 83, 152, 172, 699 |
| NciI | CCSGG | 2 cut(s) | 314, 315 |
| NdeII | GATC | 6 cut(s) | 350, 763, 1038, 1099, 1519, 1651 |
| NlaIII | CATG | 8 cut(s) | 1031, 1106, 1192, 1315, 1354, 1373, 1424, 1528 |
| NlaIV | GGNNCC | 7 cut(s) | 345, 483, 905, 1366, 1367, 1513, 1616 |
| NmuCI | GTSAC | 3 cut(s) | 775, 1084, 1334 |
| NsiI | ATGCAT | 2 cut(s) | 1176, 1313 |
| NspI | RCATGY | 1 cut(s) | 1424 |
| PasI | CCCWGGG | 1 cut(s) | 1065 |
| PciSI | GCTCTTC | 2 cut(s) | 676, 1270 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 57, 60 |
| PctI | GAATGC | 1 cut(s) | 1174 |
| PdmI | GAANNNNTTC | 3 cut(s) | 574, 648, 742 |
| PfeI | GAWTC | 4 cut(s) | 251, 953, 1451, 1528 |
| Pfl23II | CGTACG | 1 cut(s) | 170 |
| PkrI | GCNGC | 7 cut(s) | 73, 76, 79, 82, 85, 235, 1380 |
| PleI | GAGTC | 2 cut(s) | 366, 1202 |
| PpsI | GAGTC | 2 cut(s) | 366, 1202 |
| Ppu21I | YACGTR | 1 cut(s) | 1680 |
| PpuMI | RGGWCCY | 1 cut(s) | 1365 |
| PshBI | ATTAAT | 1 cut(s) | 647 |
| Psp124BI | GAGCTC | 1 cut(s) | 1585 |
| Psp5II | RGGWCCY | 1 cut(s) | 1365 |
| Psp6I | CCWGG | 2 cut(s) | 899, 1064 |
| PspFI | CCCAGC | 1 cut(s) | 1199 |
| PspGI | CCWGG | 2 cut(s) | 899, 1064 |
| PspLI | CGTACG | 1 cut(s) | 170 |
| PspN4I | GGNNCC | 7 cut(s) | 345, 483, 905, 1366, 1367, 1513, 1616 |
| PspPI | GGNCC | 1 cut(s) | 1365 |
| PspPPI | RGGWCCY | 1 cut(s) | 1365 |
| PsuI | RGATCY | 1 cut(s) | 1519 |
| RsaI | GTAC | 4 cut(s) | 172, 664, 853, 1513 |
| RsaNI | GTAC | 4 cut(s) | 171, 663, 852, 1512 |
| SacI | GAGCTC | 1 cut(s) | 1585 |
| SapI | GCTCTTC | 2 cut(s) | 676, 1270 |
| SaqAI | TTAA | 8 cut(s) | 245, 371, 419, 647, 971, 1044, 1341, 1602 |
| SatI | GCNGC | 7 cut(s) | 72, 75, 78, 81, 84, 234, 1379 |
| Sau3AI | GATC | 6 cut(s) | 350, 763, 1038, 1099, 1519, 1651 |
| Sau96I | GGNCC | 1 cut(s) | 1365 |
| ScaI | AGTACT | 1 cut(s) | 853 |
| SchI | GAGTC | 2 cut(s) | 367, 1203 |
| ScrFI | CCNGG | 4 cut(s) | 314, 315, 901, 1066 |
| SduI | GDGCHC | 3 cut(s) | 502, 755, 1585 |
| SfaNI | GCATC | 5 cut(s) | 175, 872, 1120, 1252, 1300 |
| SfcI | CTRYAG | 1 cut(s) | 934 |
| SinI | GGWCC | 1 cut(s) | 1365 |
| SmaI | CCCGGG | 1 cut(s) | 315 |
| SmlI | CTYRAG | 2 cut(s) | 224, 957 |
| SmoI | CTYRAG | 2 cut(s) | 224, 957 |
| Sse9I | AATT | 6 cut(s) | 420, 458, 620, 644, 648, 1248 |
| SsiI | CCGC | 3 cut(s) | 78, 1230, 1515 |
| SspMI | CTAG | 4 cut(s) | 387, 471, 495, 666 |
| SstI | GAGCTC | 1 cut(s) | 1585 |
| StyD4I | CCNGG | 4 cut(s) | 312, 313, 899, 1064 |
| StyI | CCWWGG | 1 cut(s) | 1151 |
| TaiI | ACGT | 3 cut(s) | 39, 1272, 1682 |
| TaqI | TCGA | 1 cut(s) | 277 |
| TaqII | GACCGA | 1 cut(s) | 919 |
| TasI | AATT | 6 cut(s) | 420, 458, 620, 644, 648, 1248 |
| TatI | WGTACW | 1 cut(s) | 851 |
| TauI | GCSGC | 1 cut(s) | 80 |
| TfiI | GAWTC | 4 cut(s) | 251, 953, 1451, 1528 |
| Tru1I | TTAA | 8 cut(s) | 245, 371, 419, 647, 971, 1044, 1341, 1602 |
| Tru9I | TTAA | 8 cut(s) | 245, 371, 419, 647, 971, 1044, 1341, 1602 |
| TscAI | CASTG | 4 cut(s) | 762, 787, 1093, 1453 |
| TseFI | GTSAC | 3 cut(s) | 775, 1084, 1334 |
| TseI | GCWGC | 6 cut(s) | 71, 74, 80, 83, 233, 1378 |
| Tsp45I | GTSAC | 3 cut(s) | 775, 1084, 1334 |
| TspDTI | ATGAA | 3 cut(s) | 173, 1167, 1339 |
| TspGWI | ACGGA | 2 cut(s) | 631, 642 |
| TspMI | CCCGGG | 1 cut(s) | 313 |
| TspRI | CASTG | 4 cut(s) | 762, 787, 1093, 1453 |
| VpaK11BI | GGWCC | 1 cut(s) | 1365 |
| VspI | ATTAAT | 1 cut(s) | 647 |
| XapI | RAATTY | 1 cut(s) | 620 |
| XceI | RCATGY | 1 cut(s) | 1424 |
| XmaI | CCCGGG | 1 cut(s) | 313 |
| XmnI | GAANNNNTTC | 3 cut(s) | 574, 648, 742 |
| XspI | CTAG | 4 cut(s) | 387, 471, 495, 666 |
| ZrmI | AGTACT | 1 cut(s) | 853 |
| Zsp2I | ATGCAT | 2 cut(s) | 1176, 1313 |