Rorug06G0493100

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007591
Physical Location & Seq
Forward (+)
61051039 .. 61052050
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0493100.1

Sequence Viewer

Length: 360 bp
ATGGGAGAGCCACTCGGAGGCAGTACTCTTCACGTCTCCACCTTGCATGGGGAACAATGCGAGGGTTGTCCTGGAGACTCGTGTGTGGAGGATGCAGAGTTTAAGCTTCTTACCACAACAAGAAAGACTACTACTGCAAAAAAGACTACTTCTGTGATTGATGAGATATTCGCCGGGAAAAAGAGGAAGAAAGCTGAAGCCGAAAAGGCTAAAAAGAAAAATGAAGAGGCGACTGGAAAATCCAACAAGCCTAAGAGAAAGAAGAAGAAAGATTTAGGCTTTGAAGACGGTGCATTTGTGGAGCCAAATTCTGGGTCAAAAAAGAGAACAAACGATGGCCTTGCTATCTATACAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

119

Amino Acids

12.92

Weight (kDa)

9.22

Isoelectric Point (pI)

30.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1764 PF08576 45 - 119 1.7e-08 Eukaryotic protein of unknown function (DUF1764)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 311
AcsI RAATTY 1 cut(s) 307
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 3 cut(s) 17, 48, 311
AgsI TTSAA 1 cut(s) 284
AjiI CACGTC 1 cut(s) 34
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 2 cut(s) 106, 194
AluI AGCT 2 cut(s) 106, 194
Alw26I GTCTC 2 cut(s) 40, 69
AoxI GGCC 1 cut(s) 337
ApoI RAATTY 1 cut(s) 307
ArsI GACNNNNNNTTYG 4 cut(s) 278, 299, 310, 331
AsuC2I CCSGG 1 cut(s) 175
BauI CACGAG 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 291
BccI CCATC 1 cut(s) 329
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BciT130I CCWGG 1 cut(s) 72
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 2 cut(s) 40, 69
BglI GCCNNNNNGGC 1 cut(s) 206
BmcAI AGTACT 1 cut(s) 25
Bme1390I CCNGG 2 cut(s) 72, 175
BmgBI CACGTC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 2 cut(s) 72, 175
BmsI GCATC 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 291
BplI GAGNNNNNCTC 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 175
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 48, 311
Bse1I ACTGG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 3 cut(s) 17, 48, 311
BseNI ACTGG 1 cut(s) 238
BshFI GGCC 1 cut(s) 339
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 3 cut(s) 17, 48, 311
BsmAI GTCTC 2 cut(s) 40, 69
BsmBI CGTCTC 1 cut(s) 40
BsnI GGCC 1 cut(s) 339
BspANI GGCC 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 303
BsrI ACTGG 1 cut(s) 238
BssSI CACGAG 1 cut(s) 79
Bst2BI CACGAG 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 2 cut(s) 33, 219
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 97
BstMAI GTCTC 2 cut(s) 40, 69
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 2 cut(s) 70, 173
BstV2I GAAGAC 1 cut(s) 291
BsuRI GGCC 1 cut(s) 339
BtrI CACGTC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 97
Csp6I GTAC 1 cut(s) 24
CviAII CATG 1 cut(s) 47
CviJI RGCY 9 cut(s) 10, 106, 194, 200, 209, 250, 279, 304, 339
CviKI_1 RGCY 9 cut(s) 10, 106, 194, 200, 209, 250, 279, 304, 339
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 33, 219
EarI CTCTTC 2 cut(s) 33, 219
Eco57I CTGAAG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 1 cut(s) 50
FaiI YATR 2 cut(s) 48, 351
FatI CATG 1 cut(s) 46
FokI GGATG 1 cut(s) 104
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 339
HapII CCGG 1 cut(s) 174
Hin1II CATG 1 cut(s) 50
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 17
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 4 cut(s) 46, 95, 137, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 1 cut(s) 50
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 5 cut(s) 57, 84, 187, 219, 297
LweI GCATC 1 cut(s) 82
MaeII ACGT 1 cut(s) 33
MboII GAAGA 6 cut(s) 20, 199, 236, 274, 277, 296
MluCI AATT 1 cut(s) 307
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 5 cut(s) 11, 55, 82, 177, 220
MseI TTAA 1 cut(s) 102
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 2 cut(s) 72, 175
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 206
NciI CCSGG 1 cut(s) 175
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 1 cut(s) 303
PflMI CCANNNNNTGG 1 cut(s) 311
PfoI TCCNGGA 1 cut(s) 70
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 303
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 1 cut(s) 102
ScaI AGTACT 1 cut(s) 25
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 2 cut(s) 72, 175
SetI ASST 4 cut(s) 36, 44, 108, 196
SfaNI GCATC 1 cut(s) 82
Sse9I AATT 1 cut(s) 307
StyD4I CCNGG 2 cut(s) 70, 173
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 1 cut(s) 36
TasI AATT 1 cut(s) 307
TatI WGTACW 1 cut(s) 23
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 237
Van91I CCANNNNNTGG 1 cut(s) 311
XapI RAATTY 1 cut(s) 307
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.