Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007591

Physical Location & Seq

Genomic Coordinates Forward (+)

61639470 .. 61640447

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAGTCCTATCCCTTTAAGAAGCCGGCCTCAATCTAAAACAGATCTTTTAATTCCTGCTATCACTCCAAAAGTTTCCCAACCTCCGAAAGTGGCAGGGTCTAGTGGGAAGGCACAAGTTAGTTCTAGTTCTCAAGCCAGCCCGGCAGTTTCTAGTCAGTCTATTAGTGCTAGCAAAGAAAAAGGAGATAAGTCTTATAGAAGTTCGTCAAAGCAGGATGTTGAAGTTCAAGATAAAGGGACAAAACGGAAGTTCGAGGAGAAAGAACATAAAGAATTAATTCCGATGGTTCGTACTAGCTCCAAACCCTCTATAATCCAGTGCCATTCAAACAATCACATATCCAGTCATCACAAGAGAAAGTTGAGATGTCTTTATATGTGTCCAGTGAATGATCAACTTTTTGCAACCAGCGCTTTGGATGGACTGGTCAACTTGTGGGAAGTTCAAGGCAGGGGGTCAGGTGCTTCTCTACTTAGTACTACAGATTGTCAATCCCCAAAGCAAAGGAGATGGCCAGAAGATATTGCCTGGCATCCCCATGGAAACAGCCTATTTTCTGTGTATACTGCTGATGGTGGGGAATCACAAGTATCAGTTCTAAATCTAAATCGAACACAAGGGAAACCTCGTGTTACTTTCTTGGAAGCCAAGCCTCATGTGAAAGGGATTATTAACAGCATAGTTTTCCCACCTTGGGAGAATACCTGCTTTGTCACTGGTGGTAGTGATCATGCTGTTGTACTCTGGAAAGAGACGGATGCAGAAAATGTCTGGAAACCAAAGCAATTGCATAGGAGTATACATTCATCTGCTGTTATGGGCGTTGCTGGGATGTGGCAAAAGCAAATTATACTATCTGTGGGAGCAGACAAGAGGATTATTGGCTTCGATGCTAATATGGAAAGAACAGAGTTTAAGCATCAGATAGATAGTAAATGCATGGTGGTTGCTGAATCAAAAGTTAAAAGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

325

Amino Acids

35.93

Weight (kDa)

9.6

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	113 - 299	2e-09	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	116 - 301	4.8e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50970
fragaria_vesca	FvH4_5g09480
malus_domestica	MD06G1130900.v1.1 MD14G1147500.v1.1
prunus_persica	Prupe.5G142100_v2.0.a1 Prupe.5G142100_v2.0.a1 Prupe.5G142100_v2.0.a1 Prupe.5G142100_v2.0.a1 Prupe.5G142100_v2.0.a1 Prupe.5G142100_v2.0.a1
pyrus_communis	pycom06g12250 pycom14g12220
rosa_chinensis	RchiOBHm_Chr1g0373351 RchiOBHm_Chr7g0188721
rosa_laevigata	RLG00000004667
rosa_multiflora	Rmu_sc0003854.1_g000005
rosa_roxburghii	Rroxscaffold_3G00266100
rosa_rugosa	Rorug06G0493100
rosa_samantha	Rh2BG475900 Rh2DG440100 Rh2DG484600 Rh7AG097900 Rh7DG099700
rosa_wichuraiana	Rw7G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	716
AccI	GTMKAC	2 cut(s)	566, 802
AcoI	YGGCCR	1 cut(s)	515
AfaI	GTAC	3 cut(s)	295, 481, 744
AfeI	AGCGCT	1 cut(s)	415
AfiI	CCNNNNNNNGG	1 cut(s)	697
AgsI	TTSAA	4 cut(s)	224, 230, 330, 449
AjnI	CCWGG	1 cut(s)	530
AluBI	AGCT	1 cut(s)	300
AluI	AGCT	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	749
Aor51HI	AGCGCT	1 cut(s)	415
AoxI	GGCC	2 cut(s)	26, 515
AseI	ATTAAT	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	416
AsuC2I	CCSGG	1 cut(s)	143
AsuNHI	GCTAGC	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	517
BauI	CACGAG	1 cut(s)	630
BccI	CCATC	4 cut(s)	280, 416, 507, 569
BciT130I	CCWGG	1 cut(s)	532
BclI	TGATCA	2 cut(s)	394, 730
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	749
BfaI	CTAG	5 cut(s)	102, 126, 153, 171, 297
BfmI	CTRYAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	716
BglI	GCCNNNNNGGC	1 cut(s)	143
BglII	AGATCT	1 cut(s)	43
BmcAI	AGTACT	1 cut(s)	481
Bme1390I	CCNGG	2 cut(s)	143, 532
BmrFI	CCNGG	2 cut(s)	143, 532
BmsI	GCATC	4 cut(s)	544, 751, 883, 931
BmtI	GCTAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	541, 695
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse118I	RCCGGY	1 cut(s)	24
Bse1I	ACTGG	5 cut(s)	319, 345, 386, 432, 724
BseBI	CCWGG	1 cut(s)	532
BseDI	CCNNGG	2 cut(s)	541, 695
BseGI	GGATG	5 cut(s)	223, 427, 535, 766, 840
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseNI	ACTGG	5 cut(s)	319, 345, 386, 432, 724
BseRI	GAGGAG	1 cut(s)	272
BseYI	CCCAGC	1 cut(s)	830
BshFI	GGCC	2 cut(s)	28, 517
BsiSI	CCGG	2 cut(s)	25, 143
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmAI	GTCTC	1 cut(s)	749
BsmBI	CGTCTC	1 cut(s)	749
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	28, 517
Bsp143I	GATC	3 cut(s)	43, 394, 730
Bsp19I	CCATGG	1 cut(s)	541
BspANI	GGCC	2 cut(s)	28, 517
BspMI	ACCTGC	1 cut(s)	716
BspOI	GCTAGC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	24
BsrI	ACTGG	5 cut(s)	319, 345, 386, 432, 724
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	541, 695
BssMI	GATC	3 cut(s)	43, 394, 730
BssNAI	GTATAC	2 cut(s)	567, 803
BssSI	CACGAG	1 cut(s)	630
BssT1I	CCWWGG	2 cut(s)	541, 695
Bst1107I	GTATAC	2 cut(s)	567, 803
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	1 cut(s)	532
BstC8I	GCNNGC	3 cut(s)	26, 139, 172
BstDEI	CTNAG	1 cut(s)	476
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	5 cut(s)	223, 427, 535, 766, 840
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	3 cut(s)	46, 397, 733
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	3 cut(s)	43, 394, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 413
BstNI	CCWGG	1 cut(s)	532
BstSCI	CCNGG	2 cut(s)	141, 530
BstSFI	CTRYAG	1 cut(s)	483
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	43
BstZ17I	GTATAC	2 cut(s)	567, 803
BsuRI	GGCC	2 cut(s)	28, 517
BtgI	CCRYGG	1 cut(s)	541
BtsCI	GGATG	5 cut(s)	223, 427, 535, 766, 840
BtsIMutI	CAGTG	3 cut(s)	326, 393, 717
BveI	ACCTGC	1 cut(s)	716
Cac8I	GCNNGC	3 cut(s)	26, 139, 172
CfoI	GCGC	1 cut(s)	416
Cfr10I	RCCGGY	1 cut(s)	24
Csp6I	GTAC	3 cut(s)	294, 480, 743
CviAII	CATG	4 cut(s)	542, 659, 734, 943
CviQI	GTAC	3 cut(s)	294, 480, 743
DdeI	CTNAG	1 cut(s)	476
DpnI	GATC	3 cut(s)	45, 396, 732
DpnII	GATC	3 cut(s)	43, 394, 730
EaeI	YGGCCR	1 cut(s)	515
Eco130I	CCWWGG	2 cut(s)	541, 695
Eco47III	AGCGCT	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	530
EcoT14I	CCWWGG	2 cut(s)	541, 695
EcoT22I	ATGCAT	1 cut(s)	944
ErhI	CCWWGG	2 cut(s)	541, 695
Esp3I	CGTCTC	1 cut(s)	749
FaeI	CATG	4 cut(s)	545, 662, 737, 946
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	4 cut(s)	541, 658, 733, 942
FbaI	TGATCA	2 cut(s)	394, 730
FblI	GTMKAC	2 cut(s)	566, 802
FokI	GGATG	5 cut(s)	230, 434, 522, 773, 847
FspBI	CTAG	5 cut(s)	102, 126, 153, 171, 297
GlaI	GCGC	1 cut(s)	415
GsaI	CCCAGC	1 cut(s)	834
HaeII	RGCGCY	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	28, 517
HapII	CCGG	2 cut(s)	25, 143
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	4 cut(s)	545, 662, 737, 946
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	3 cut(s)	4, 584, 956
HpaII	CCGG	2 cut(s)	25, 143
Hpy166II	GTNNAC	3 cut(s)	433, 567, 803
Hpy188I	TCNGA	3 cut(s)	87, 285, 927
Hpy188III	TCNNGA	3 cut(s)	230, 748, 775
Hpy8I	GTNNAC	3 cut(s)	433, 567, 803
HpyAV	CCTTC	1 cut(s)	103
HpyCH4V	TGCA	4 cut(s)	407, 764, 793, 942
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 413
HpyF3I	CTNAG	1 cut(s)	476
Hsp92II	CATG	4 cut(s)	545, 662, 737, 946
HspAI	GCGC	1 cut(s)	414
KroI	GCCGGC	1 cut(s)	24
KroNI	GCCGGC	1 cut(s)	26
Ksp22I	TGATCA	2 cut(s)	394, 730
Kzo9I	GATC	3 cut(s)	43, 394, 730
LmnI	GCTCC	2 cut(s)	305, 866
LweI	GCATC	4 cut(s)	544, 751, 883, 931
MaeI	CTAG	5 cut(s)	102, 126, 153, 171, 297
MaeIII	GTNAC	2 cut(s)	634, 715
MalI	GATC	3 cut(s)	45, 396, 732
MboI	GATC	3 cut(s)	43, 394, 730
MboII	GAAGA	1 cut(s)	533
MfeI	CAATTG	1 cut(s)	788
MflI	RGATCY	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	517
MluCI	AATT	5 cut(s)	51, 275, 279, 788, 849
MluNI	TGGCCA	1 cut(s)	517
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	7 cut(s)	39, 93, 250, 319, 639, 666, 870
Mox20I	TGGCCA	1 cut(s)	517
Mph1103I	ATGCAT	1 cut(s)	944
MroNI	GCCGGC	1 cut(s)	24
MroXI	GAANNNNTTC	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	517
MseI	TTAA	6 cut(s)	17, 50, 278, 675, 918, 966
MslI	CAYNNNNRTG	1 cut(s)	540
Msp20I	TGGCCA	1 cut(s)	517
MspI	CCGG	2 cut(s)	25, 143
MspR9I	CCNGG	2 cut(s)	143, 532
MunI	CAATTG	1 cut(s)	788
MvaI	CCWGG	1 cut(s)	532
MwoI	GCNNNNNNNGC	2 cut(s)	143, 413
NaeI	GCCGGC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	143
NcoI	CCATGG	1 cut(s)	541
NdeII	GATC	3 cut(s)	43, 394, 730
NgoMIV	GCCGGC	1 cut(s)	24
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	4 cut(s)	545, 662, 737, 946
NmuCI	GTSAC	1 cut(s)	715
NsiI	ATGCAT	1 cut(s)	944
PdiI	GCCGGC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	584, 956
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	530
PspFI	CCCAGC	1 cut(s)	830
PspGI	CCWGG	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	3 cut(s)	295, 481, 744
RsaNI	GTAC	3 cut(s)	294, 480, 743
RseI	CAYNNNNRTG	1 cut(s)	540
SaqAI	TTAA	6 cut(s)	17, 50, 278, 675, 918, 966
Sau3AI	GATC	3 cut(s)	43, 394, 730
ScaI	AGTACT	1 cut(s)	481
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	143, 532
SetI	ASST	6 cut(s)	85, 302, 466, 631, 697, 710
SfaNI	GCATC	4 cut(s)	544, 751, 883, 931
SfcI	CTRYAG	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	5 cut(s)	51, 275, 279, 788, 849
SspMI	CTAG	5 cut(s)	102, 126, 153, 171, 297
StyD4I	CCNGG	2 cut(s)	141, 530
StyI	CCWWGG	2 cut(s)	541, 695
TaqI	TCGA	3 cut(s)	255, 613, 891
TasI	AATT	5 cut(s)	51, 275, 279, 788, 849
TatI	WGTACW	2 cut(s)	479, 742
TfiI	GAWTC	2 cut(s)	584, 956
Tru1I	TTAA	6 cut(s)	17, 50, 278, 675, 918, 966
Tru9I	TTAA	6 cut(s)	17, 50, 278, 675, 918, 966
TscAI	CASTG	3 cut(s)	326, 393, 724
TseFI	GTSAC	1 cut(s)	715
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	1 cut(s)	798
TspGWI	ACGGA	2 cut(s)	262, 773
TspRI	CASTG	3 cut(s)	326, 393, 724
VspI	ATTAAT	1 cut(s)	278
XmiI	GTMKAC	2 cut(s)	566, 802
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	5 cut(s)	102, 126, 153, 171, 297
ZrmI	AGTACT	1 cut(s)	481
Zsp2I	ATGCAT	1 cut(s)	944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.