Prupe.5G146600_v2.0.a1

Responsible for synthesis of pseudouridine from uracil

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
13460945 .. 13464937
3993 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G146600.1

Sequence Viewer

Length: 1113 bp
ATGAAGAGGAAGTTGGAAGAAGAGAACATGGAGATCGTCTGGCAAACCCCAGCCAACCCTCCACACCGACTAGATTACATCTTTCGCAACGGGAGGCGCCATGTGAGACCCTACTACTTCGAGTTCATCGCTCATGTTAAGAATCGCTGGGCGGGGAAGACCATTGTTGACTTGTTCACTGATGAGTTTAAAGGCCGGTCTCATGATTACTATGTTAGCGCAGTGAAATGTGGAAGGATACGAGTTGATGGAGAGATGGTGCCAGTTTCCTACATAGTTAAAACGTCAGAGAAGATAAGCCACTTCCTGCACAGGCATGAACCACCAGTGTTGACTTCGGATGTGTTGATTCTCCAAAAAGAACCAGATGTGGTTACTGTTTGTAAACCTGCATCTATTCCGGTGCATCCGTGTGGTCAATATCGTAAGAATACCGTTGTTGGCATCCTTGAGGCGGAGCATGGCTTGGCACCTCTATTTCCGGTCCATCGACTAGATCGTCTTGTCTCAGGACTCCTTATCTTGGCCAGAAGTGCTTCAAAAGCTGACTTTTTTAGGCAACAGATTGAGGGAGGGATGATCAAGAAACAGTACATTGCAAGAGTTGCTGGGGAATTTCCTGAGCAGGAGCAAGTTGTAGATGCTAACATAAATCATAATGCTCGAGAACAAAGGAGCACAGCAGAGGTTGGTGCTTGTGGTGATACTACTCCCATAAAGGGGAAGACTGCTTGTACAAAGTTTACTAGACTCAGTACTAATGGAGTTCATAGCCTTGTCTTGTGTGAACCAGTCACTGGCCGAACTCATCAGATACGTGTACATTTGCAACATGCAGGCTATCCAATAGCCAATGACTTGCTTTACCTGTCCAAACATGTTAATGATCGCTCAGCATCGATCCTGGCATCTGATTTTTGCGAAAATTTATCCACCGAACATGTAGATTCCAATGAAGATTTCAGCATCGATCCCATGTGTACAAATTGTCCAGATTTGGTTCCAAAAGGATACAATGTTCATGAAGAGGCTCTGTGGCTACACTGTGTTCGATATTCTGCACCTGGATGGACTTATGAATGCCCATATCCGGATTGGGCATCACTCAGCTAG

Protein Analysis

371

Amino Acids

41.97

Weight (kDa)

7.02

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 498
Acc36I ACCTGC 1 cut(s) 397
AccB1I GGYRCC 3 cut(s) 96, 259, 469
AccB7I CCANNNNNTGG 1 cut(s) 797
AccIII TCCGGA 1 cut(s) 1090
AciI CCGC 2 cut(s) 152, 455
AclWI GGATC 2 cut(s) 895, 965
AcoI YGGCCR 2 cut(s) 525, 799
AcsI RAATTY 2 cut(s) 614, 925
AcyI GRCGYC 1 cut(s) 97
AfaI GTAC 5 cut(s) 593, 736, 757, 822, 982
AfiI CCNNNNNNNGG 6 cut(s) 454, 523, 719, 720, 797, 1090
AflIII ACRYGT 3 cut(s) 817, 877, 940
AgsI TTSAA 1 cut(s) 540
AjnI CCWGG 2 cut(s) 903, 1063
AjuI GAANNNNNNNTTGG 3 cut(s) 28, 944, 976
AloI GAACNNNNNNTCC 2 cut(s) 1002, 1034
AluBI AGCT 2 cut(s) 545, 1110
AluI AGCT 2 cut(s) 545, 1110
Alw21I GWGCWC 1 cut(s) 680
Alw26I GTCTC 3 cut(s) 100, 204, 511
AlwI GGATC 2 cut(s) 895, 965
AlwNI CAGNNNCTG 1 cut(s) 797
Ama87I CYCGRG 1 cut(s) 663
Aor13HI TCCGGA 1 cut(s) 1090
AoxI GGCC 3 cut(s) 193, 525, 799
ApoI RAATTY 2 cut(s) 614, 925
Asp700I GAANNNNTTC 1 cut(s) 535
AspLEI GCGC 2 cut(s) 99, 221
AspS9I GGNCC 1 cut(s) 484
AsuHPI GGTGA 1 cut(s) 713
AvaI CYCGRG 1 cut(s) 663
AvaII GGWCC 1 cut(s) 484
BalI TGGCCA 1 cut(s) 527
BanI GGYRCC 3 cut(s) 96, 259, 469
BbsI GAAGAC 2 cut(s) 164, 731
Bbv12I GWGCWC 1 cut(s) 680
BccI CCATC 4 cut(s) 242, 250, 495, 1062
BciT130I CCWGG 2 cut(s) 905, 1065
BciVI GTATCC 2 cut(s) 231, 1004
BclI TGATCA 1 cut(s) 579
BcoDI GTCTC 3 cut(s) 100, 204, 511
BfaI CTAG 4 cut(s) 71, 494, 747, 1111
BfoI RGCGCY 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 397
BfuI GTATCC 2 cut(s) 231, 1004
BlpI GCTNAGC 1 cut(s) 892
BmcAI AGTACT 1 cut(s) 757
Bme1390I CCNGG 2 cut(s) 905, 1065
Bme18I GGWCC 1 cut(s) 484
BmeT110I CYCGRG 1 cut(s) 663
BmgT120I GGNCC 1 cut(s) 484
BmiI GGNNCC 4 cut(s) 98, 261, 471, 1002
BmrFI CCNGG 2 cut(s) 905, 1065
BmsI GCATC 8 cut(s) 401, 415, 453, 631, 905, 917, 975, 1109
BpiI GAAGAC 2 cut(s) 164, 731
Bpu10I CCTNAGC 1 cut(s) 621
Bpu1102I GCTNAGC 1 cut(s) 892
BpuEI CTTGAG 1 cut(s) 470
Bsa29I ATCGAT 2 cut(s) 899, 969
BsaAI YACGTR 1 cut(s) 818
BsaHI GRCGYC 1 cut(s) 97
BsaI GGTCTC 2 cut(s) 100, 204
BsaWI WCCGGW 3 cut(s) 400, 481, 1090
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 6 cut(s) 454, 523, 719, 720, 797, 1090
Bse118I RCCGGY 1 cut(s) 195
Bse1I ACTGG 4 cut(s) 263, 326, 791, 802
Bse3DI GCAATG 1 cut(s) 594
BseAI TCCGGA 1 cut(s) 1090
BseBI CCWGG 2 cut(s) 905, 1065
BseCI ATCGAT 2 cut(s) 899, 969
BseGI GGATG 5 cut(s) 346, 406, 444, 582, 1073
BseLI CCNNNNNNNGG 6 cut(s) 454, 523, 719, 720, 797, 1090
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 4 cut(s) 522, 612, 766, 906
BseNI ACTGG 4 cut(s) 263, 326, 791, 802
BseYI CCCAGC 3 cut(s) 49, 147, 608
BsgI GTGCAG 2 cut(s) 293, 1044
BshFI GGCC 3 cut(s) 195, 527, 801
BshNI GGYRCC 3 cut(s) 96, 259, 469
BshVI ATCGAT 2 cut(s) 899, 969
BsiHKAI GWGCWC 1 cut(s) 680
BsiHKCI CYCGRG 1 cut(s) 663
BsiSI CCGG 4 cut(s) 196, 401, 482, 1091
BslI CCNNNNNNNGG 6 cut(s) 454, 523, 719, 720, 797, 1090
BsmAI GTCTC 3 cut(s) 100, 204, 511
BsmI GAATGC 1 cut(s) 1085
BsnI GGCC 3 cut(s) 195, 527, 801
Bso31I GGTCTC 2 cut(s) 100, 204
BsoBI CYCGRG 1 cut(s) 663
Bsp1286I GDGCHC 1 cut(s) 680
Bsp13I TCCGGA 1 cut(s) 1090
Bsp1407I TGTACA 3 cut(s) 734, 820, 980
Bsp143I GATC 6 cut(s) 33, 496, 579, 886, 900, 970
Bsp1720I GCTNAGC 1 cut(s) 892
BspACI CCGC 2 cut(s) 152, 455
BspANI GGCC 3 cut(s) 195, 527, 801
BspCNI CTCAG 4 cut(s) 521, 613, 765, 905
BspDI ATCGAT 2 cut(s) 899, 969
BspEI TCCGGA 1 cut(s) 1090
BspHI TCATGA 2 cut(s) 202, 1021
BspLI GGNNCC 4 cut(s) 98, 261, 471, 1002
BspMI ACCTGC 1 cut(s) 397
BspPI GGATC 2 cut(s) 895, 965
BspT107I GGYRCC 3 cut(s) 96, 259, 469
BspTNI GGTCTC 2 cut(s) 100, 204
BsrDI GCAATG 1 cut(s) 594
BsrFI RCCGGY 1 cut(s) 195
BsrGI TGTACA 3 cut(s) 734, 820, 980
BsrI ACTGG 4 cut(s) 263, 326, 791, 802
BssAI RCCGGY 1 cut(s) 195
BssMI GATC 6 cut(s) 33, 496, 579, 886, 900, 970
BssNI GRCGYC 1 cut(s) 97
Bst2UI CCWGG 2 cut(s) 905, 1065
Bst4CI ACNGT 4 cut(s) 379, 436, 591, 1046
Bst6I CTCTTC 2 cut(s) 15, 1020
BstACI GRCGYC 1 cut(s) 97
BstAPI GCANNNNNTGC 1 cut(s) 605
BstAUI TGTACA 3 cut(s) 734, 820, 980
BstBAI YACGTR 1 cut(s) 818
BstC8I GCNNGC 1 cut(s) 838
BstDEI CTNAG 5 cut(s) 508, 621, 752, 892, 1106
BstF5I GGATG 5 cut(s) 346, 406, 444, 582, 1073
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 2 cut(s) 99, 221
BstKTI GATC 6 cut(s) 36, 499, 582, 889, 903, 973
BstMAI GTCTC 3 cut(s) 100, 204, 511
BstMBI GATC 6 cut(s) 33, 496, 579, 886, 900, 970
BstMWI GCNNNNNNNGC 3 cut(s) 533, 542, 605
BstNI CCWGG 2 cut(s) 905, 1065
BstNSI RCATGY 3 cut(s) 836, 881, 944
BstSCI CCNGG 2 cut(s) 903, 1063
BstV2I GAAGAC 2 cut(s) 164, 731
Bsu15I ATCGAT 2 cut(s) 899, 969
BsuI GTATCC 2 cut(s) 231, 1004
BsuRI GGCC 3 cut(s) 195, 527, 801
BsuTUI ATCGAT 2 cut(s) 899, 969
BtgZI GCGATG 1 cut(s) 112
BtsCI GGATG 5 cut(s) 346, 406, 444, 582, 1073
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 5 cut(s) 177, 228, 333, 795, 1042
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 838
CaiI CAGNNNCTG 1 cut(s) 797
CciI TCATGA 2 cut(s) 202, 1021
CfoI GCGC 2 cut(s) 99, 221
Cfr10I RCCGGY 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 484
ClaI ATCGAT 2 cut(s) 899, 969
Csp6I GTAC 5 cut(s) 592, 735, 756, 821, 981
CspCI CAANNNNNGTGG 2 cut(s) 312, 347
CviQI GTAC 5 cut(s) 592, 735, 756, 821, 981
DdeI CTNAG 5 cut(s) 508, 621, 752, 892, 1106
DinI GGCGCC 1 cut(s) 98
DpnI GATC 6 cut(s) 35, 498, 581, 888, 902, 972
DpnII GATC 6 cut(s) 33, 496, 579, 886, 900, 970
DraI TTTAAA 1 cut(s) 190
DrdI GACNNNNNNGTC 1 cut(s) 498
DseDI GACNNNNNNGTC 1 cut(s) 498
EaeI YGGCCR 2 cut(s) 525, 799
Eam1104I CTCTTC 2 cut(s) 15, 1020
EarI CTCTTC 2 cut(s) 15, 1020
EciI GGCGGA 1 cut(s) 470
Eco31I GGTCTC 2 cut(s) 100, 204
Eco47I GGWCC 1 cut(s) 484
Eco88I CYCGRG 1 cut(s) 663
EcoRII CCWGG 2 cut(s) 903, 1063
EgeI GGCGCC 1 cut(s) 98
EheI GGCGCC 1 cut(s) 98
FauI CCCGC 1 cut(s) 145
FbaI TGATCA 1 cut(s) 579
FokI GGATG 5 cut(s) 353, 393, 431, 589, 1080
FspBI CTAG 4 cut(s) 71, 494, 747, 1111
GlaI GCGC 2 cut(s) 98, 220
GsaI CCCAGC 3 cut(s) 53, 151, 612
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 3 cut(s) 195, 527, 801
HapII CCGG 4 cut(s) 196, 401, 482, 1091
HhaI GCGC 2 cut(s) 99, 221
Hin1I GRCGYC 1 cut(s) 97
Hin6I GCGC 2 cut(s) 97, 219
HinP1I GCGC 2 cut(s) 97, 219
HincII GTYRAC 2 cut(s) 169, 333
HindII GTYRAC 2 cut(s) 169, 333
HinfI GANTC 5 cut(s) 142, 349, 513, 750, 947
HpaII CCGG 4 cut(s) 196, 401, 482, 1091
HphI GGTGA 1 cut(s) 713
Hpy166II GTNNAC 8 cut(s) 169, 177, 333, 386, 744, 788, 821, 981
Hpy188I TCNGA 4 cut(s) 289, 340, 813, 913
Hpy188III TCNNGA 8 cut(s) 203, 510, 583, 620, 665, 992, 1022, 1091
Hpy8I GTNNAC 8 cut(s) 169, 177, 333, 386, 744, 788, 821, 981
HpyAV CCTTC 1 cut(s) 228
HpyCH4III ACNGT 4 cut(s) 379, 436, 591, 1046
HpyCH4IV ACGT 2 cut(s) 284, 817
HpyCH4V TGCA 7 cut(s) 310, 392, 406, 599, 829, 836, 1061
HpyF10VI GCNNNNNNNGC 3 cut(s) 533, 542, 605
HpyF3I CTNAG 5 cut(s) 508, 621, 752, 892, 1106
HpySE526I ACGT 2 cut(s) 284, 817
Hsp92I GRCGYC 1 cut(s) 97
HspAI GCGC 2 cut(s) 97, 219
KasI GGCGCC 1 cut(s) 96
Kpn2I TCCGGA 1 cut(s) 1090
Ksp22I TGATCA 1 cut(s) 579
Kzo9I GATC 6 cut(s) 33, 496, 579, 886, 900, 970
LmnI GCTCC 3 cut(s) 457, 628, 675
LweI GCATC 8 cut(s) 401, 415, 453, 631, 905, 917, 975, 1109
MaeI CTAG 4 cut(s) 71, 494, 747, 1111
MaeII ACGT 2 cut(s) 284, 817
MaeIII GTNAC 2 cut(s) 373, 793
MalI GATC 6 cut(s) 35, 498, 581, 888, 902, 972
MboI GATC 6 cut(s) 33, 496, 579, 886, 900, 970
MboII GAAGA 8 cut(s) 16, 29, 32, 169, 304, 736, 968, 1037
MhlI GDGCHC 1 cut(s) 680
MlsI TGGCCA 1 cut(s) 527
MluCI AATT 3 cut(s) 614, 925, 985
MluNI TGGCCA 1 cut(s) 527
Mly113I GGCGCC 1 cut(s) 97
MlyI GAGTC 2 cut(s) 507, 744
MnlI CCTC 8 cut(s) 69, 87, 445, 483, 562, 566, 679, 1021
Mox20I TGGCCA 1 cut(s) 527
MroI TCCGGA 1 cut(s) 1090
MroXI GAANNNNTTC 1 cut(s) 535
MscI TGGCCA 1 cut(s) 527
MseI TTAA 4 cut(s) 138, 189, 279, 882
MslI CAYNNNNRTG 4 cut(s) 315, 411, 882, 1066
Msp20I TGGCCA 1 cut(s) 527
MspI CCGG 4 cut(s) 196, 401, 482, 1091
MspR9I CCNGG 2 cut(s) 905, 1065
Mva1269I GAATGC 1 cut(s) 1085
MvaI CCWGG 2 cut(s) 905, 1065
MwoI GCNNNNNNNGC 3 cut(s) 533, 542, 605
NarI GGCGCC 1 cut(s) 97
NdeII GATC 6 cut(s) 33, 496, 579, 886, 900, 970
NlaIV GGNNCC 4 cut(s) 98, 261, 471, 1002
NmuCI GTSAC 1 cut(s) 793
NspI RCATGY 3 cut(s) 836, 881, 944
PaeR7I CTCGAG 1 cut(s) 663
PagI TCATGA 2 cut(s) 202, 1021
PciI ACATGT 2 cut(s) 877, 940
PcsI WCGNNNNNNNCGW 1 cut(s) 496
PctI GAATGC 1 cut(s) 1085
PdmI GAANNNNTTC 1 cut(s) 535
PfeI GAWTC 3 cut(s) 142, 349, 947
PflMI CCANNNNNTGG 1 cut(s) 797
PleI GAGTC 2 cut(s) 507, 744
PluTI GGCGCC 1 cut(s) 100
PpsI GAGTC 2 cut(s) 507, 744
Ppu21I YACGTR 1 cut(s) 818
PscI ACATGT 2 cut(s) 877, 940
Psp6I CCWGG 2 cut(s) 903, 1063
PspFI CCCAGC 3 cut(s) 49, 147, 608
PspGI CCWGG 2 cut(s) 903, 1063
PspN4I GGNNCC 4 cut(s) 98, 261, 471, 1002
PspPI GGNCC 1 cut(s) 484
PstNI CAGNNNCTG 1 cut(s) 797
RsaI GTAC 5 cut(s) 593, 736, 757, 822, 982
RsaNI GTAC 5 cut(s) 592, 735, 756, 821, 981
RseI CAYNNNNRTG 4 cut(s) 315, 411, 882, 1066
SaqAI TTAA 4 cut(s) 138, 189, 279, 882
Sau3AI GATC 6 cut(s) 33, 496, 579, 886, 900, 970
Sau96I GGNCC 1 cut(s) 484
ScaI AGTACT 1 cut(s) 757
SchI GAGTC 2 cut(s) 507, 744
ScrFI CCNGG 2 cut(s) 905, 1065
SduI GDGCHC 1 cut(s) 680
SetI ASST 9 cut(s) 287, 391, 475, 547, 690, 820, 870, 1066, 1112
SfaNI GCATC 8 cut(s) 401, 415, 453, 631, 905, 917, 975, 1109
SfoI GGCGCC 1 cut(s) 98
Sfr274I CTCGAG 1 cut(s) 663
SinI GGWCC 1 cut(s) 484
SlaI CTCGAG 1 cut(s) 663
SmiMI CAYNNNNRTG 4 cut(s) 315, 411, 882, 1066
SmlI CTYRAG 2 cut(s) 449, 663
SmoI CTYRAG 2 cut(s) 449, 663
Sse9I AATT 3 cut(s) 614, 925, 985
SsiI CCGC 2 cut(s) 152, 455
SspDI GGCGCC 1 cut(s) 96
SspMI CTAG 4 cut(s) 71, 494, 747, 1111
StyD4I CCNGG 2 cut(s) 903, 1063
TaaI ACNGT 4 cut(s) 379, 436, 591, 1046
TaiI ACGT 2 cut(s) 287, 820
TaqI TCGA 6 cut(s) 120, 490, 664, 899, 969, 1051
TasI AATT 3 cut(s) 614, 925, 985
TatI WGTACW 5 cut(s) 591, 734, 755, 820, 980
TfiI GAWTC 3 cut(s) 142, 349, 947
Tru1I TTAA 4 cut(s) 138, 189, 279, 882
Tru9I TTAA 4 cut(s) 138, 189, 279, 882
TscAI CASTG 5 cut(s) 184, 228, 333, 802, 1049
TseFI GTSAC 1 cut(s) 793
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 8 cut(s) 17, 115, 333, 758, 969, 1010, 1038, 1092
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 5 cut(s) 184, 228, 333, 802, 1049
Van91I CCANNNNNTGG 1 cut(s) 797
VpaK11BI GGWCC 1 cut(s) 484
XapI RAATTY 2 cut(s) 614, 925
XceI RCATGY 3 cut(s) 836, 881, 944
XcmI CCANNNNNNNNNTGG 1 cut(s) 1092
XhoI CTCGAG 1 cut(s) 663
XmnI GAANNNNTTC 1 cut(s) 535
XspI CTAG 4 cut(s) 71, 494, 747, 1111
ZrmI AGTACT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.