Rw7G008850

Responsible for synthesis of pseudouridine from uracil

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
8194881 .. 8206391
11511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G008850.1

Sequence Viewer

Length: 1173 bp
ATGCCAACGACGTCGTTTGCTTCTAGGGCTCTGCAAATTTGCAAAAATTTGATCCCAAATCAGAATAAAAGAGGAAAAATGAAGAGGAAGATAGAAGAGACGGACATAGAGATCGTTTGGCAATCTCCCAAATTTGTTCAATTAGGGAGGCGCCATGTGAGACCCTACTACTTTGAGTTCATTGCTCATGTTAAGAACCGGTGGGCGGGGAAGACCATCGTTGACTTGTTCACTGACGAGTTCAAAGGCCGGAATCGTGACTACTATATTAGTGCGGTTAAATGTGGGAGGATACAAGTTGATGGGCAACTTGTGCCGGTTTCCTTCATAGTTAAACCGTCGCAAAAGATAAGCCACTTCCTGCACAGGCATGAACCGCCCGTGATGACTTGGGATGTGAAAATTCTTGAAACAGAACCCGATGTGGTCACCATTTGTAAACCTGCATCTGTTCCAGTGCATCCATGTGGTCAGTATCGTAAGAACACTGTTGTTGGCATCCTACAGGCAGAGCATGGCTTGGCACCTCTATTTCCGATTCATCGATTAGATCGTCTGGTCTCAGGACTCCTTATCTTGGCTAGAAGCGCAGCACAAGCTGACATTTTCAGGCAACAGATTGAGGGAGGGATGGTTCATAAACAGTACATTGCAAGAGTCATTGGAGAGTTTCCTGAGGAGGAGCAAGTTGTAGATGCTAACATAAATCATAATGCTCGAGAAGGAAGGAGCTCTACCGAGGGGAAGACTGCTTGTACAAAGTTTACTAGAATCAGTACGAATGGAATTCAGAGCATTGTCTTGTGTGAACCAGTCACTGGCCGCACTCATCAGATACGCGTCCATTTGCAACATGCAGGCCATCCAATAGCGAATGACATGCTTTACCTGTCCAAACATGTAAGTGATCGTTCAGCTGAAGGAATGGGTGCTGATAGAGCTGCTGCTAATCCAGACCACTCTCCAGCTTCTGGTGTTGGCGAAAATAAATCCGCTTCGCATGAAGATTCTGGTGAGGACTTCAGCATTGATCCAATGTGTACAAATTGTCCAAGTTTAGCTCCAAAAGGATACGATTATCATGAAGAGGCCTTGTGGCTACACTGTTTTAGATATTCTGGACCTGGATGGGTTTATGAGTGCCCACATCCGGATTGGGCATCACTTAGCTAG

Protein Analysis

390

Amino Acids

43.84

Weight (kDa)

8.27

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PseudoU_synth_2 PF00849 141 - 285 4.1e-29 RNA pseudouridylate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 451
AccB1I GGYRCC 2 cut(s) 150, 523
AccB7I CCANNNNNTGG 2 cut(s) 818, 971
AccII CGCG 1 cut(s) 840
AccIII TCCGGA 1 cut(s) 1150
AciI CCGC 5 cut(s) 206, 275, 377, 823, 993
AclWI GGATC 2 cut(s) 46, 1025
AcoI YGGCCR 1 cut(s) 820
AcsI RAATTY 5 cut(s) 36, 46, 131, 402, 786
AcuI CTGAAG 2 cut(s) 939, 1006
AcyI GRCGYC 2 cut(s) 11, 151
AfaI GTAC 4 cut(s) 647, 757, 778, 1042
AfiI CCNNNNNNNGG 5 cut(s) 205, 577, 818, 971, 1150
AflIII ACRYGT 2 cut(s) 838, 898
AgeI ACCGGT 1 cut(s) 198
AgsI TTSAA 3 cut(s) 140, 244, 410
AjnI CCWGG 1 cut(s) 1123
AloI GAACNNNNNNTCC 2 cut(s) 618, 650
AluBI AGCT 7 cut(s) 599, 732, 917, 941, 968, 1061, 1170
AluI AGCT 7 cut(s) 599, 732, 917, 941, 968, 1061, 1170
Alw21I GWGCWC 1 cut(s) 734
Alw26I GTCTC 3 cut(s) 92, 154, 565
AlwI GGATC 2 cut(s) 46, 1025
AlwNI CAGNNNCTG 2 cut(s) 818, 971
Ama87I CYCGRG 1 cut(s) 717
Aor13HI TCCGGA 1 cut(s) 1150
AoxI GGCC 4 cut(s) 247, 820, 859, 1089
ApeKI GCWGC 3 cut(s) 590, 941, 944
ApoI RAATTY 5 cut(s) 36, 46, 131, 402, 786
AsiGI ACCGGT 1 cut(s) 198
AspLEI GCGC 2 cut(s) 153, 590
AspS9I GGNCC 1 cut(s) 1121
AsuHPI GGTGA 2 cut(s) 421, 1025
AvaI CYCGRG 1 cut(s) 717
AvaII GGWCC 1 cut(s) 1121
AxyI CCTNAGG 1 cut(s) 675
BaeGI GKGCMC 1 cut(s) 1145
BanI GGYRCC 2 cut(s) 150, 523
BanII GRGCYC 2 cut(s) 31, 734
BarI GAAGNNNNNNTAC 2 cut(s) 718, 750
BbsI GAAGAC 2 cut(s) 218, 752
Bbv12I GWGCWC 1 cut(s) 734
BbvI GCAGC 3 cut(s) 602, 928, 931
BccI CCATC 5 cut(s) 224, 296, 625, 870, 1122
BcgI CGANNNNNNTGC 2 cut(s) 862, 896
BciT130I CCWGG 1 cut(s) 1125
BciVI GTATCC 2 cut(s) 285, 1064
BcoDI GTCTC 3 cut(s) 92, 154, 565
BfaI CTAG 4 cut(s) 24, 582, 768, 1171
BfmI CTRYAG 1 cut(s) 503
BfoI RGCGCY 1 cut(s) 154
BfuAI ACCTGC 1 cut(s) 451
BfuI GTATCC 2 cut(s) 285, 1064
BisI GCNGC 4 cut(s) 591, 823, 942, 945
BlsI GCNGC 4 cut(s) 592, 824, 943, 946
Bme1390I CCNGG 1 cut(s) 1125
Bme18I GGWCC 1 cut(s) 1121
BmeT110I CYCGRG 1 cut(s) 717
BmgT120I GGNCC 1 cut(s) 1121
BmiI GGNNCC 2 cut(s) 152, 525
BmrFI CCNGG 1 cut(s) 1125
BmsI GCATC 5 cut(s) 455, 469, 507, 685, 1169
BpiI GAAGAC 2 cut(s) 218, 752
BpmI CTGGAG 1 cut(s) 948
Bsa29I ATCGAT 1 cut(s) 544
BsaHI GRCGYC 2 cut(s) 11, 151
BsaI GGTCTC 2 cut(s) 154, 565
BsaJI CCNNGG 1 cut(s) 738
BsaWI WCCGGW 2 cut(s) 198, 1150
BsaXI ACNNNNNCTCC 2 cut(s) 618, 648
Bsc4I CCNNNNNNNGG 5 cut(s) 205, 577, 818, 971, 1150
Bse118I RCCGGY 2 cut(s) 198, 316
Bse1I ACTGG 3 cut(s) 455, 812, 823
Bse21I CCTNAGG 1 cut(s) 675
Bse3DI GCAATG 2 cut(s) 180, 648
BseAI TCCGGA 1 cut(s) 1150
BseBI CCWGG 1 cut(s) 1125
BseCI ATCGAT 1 cut(s) 544
BseDI CCNNGG 1 cut(s) 738
BseGI GGATG 7 cut(s) 400, 460, 498, 636, 862, 1133, 1147
BseLI CCNNNNNNNGG 5 cut(s) 205, 577, 818, 971, 1150
BseMI GCAATG 2 cut(s) 180, 648
BseMII CTCAG 2 cut(s) 576, 666
BseNI ACTGG 3 cut(s) 455, 812, 823
BseRI GAGGAG 2 cut(s) 692, 695
BseSI GKGCMC 1 cut(s) 1145
BseXI GCAGC 3 cut(s) 602, 928, 931
BsgI GTGCAG 1 cut(s) 347
Bsh1236I CGCG 1 cut(s) 840
BshFI GGCC 4 cut(s) 249, 822, 861, 1091
BshNI GGYRCC 2 cut(s) 150, 523
BshTI ACCGGT 1 cut(s) 198
BshVI ATCGAT 1 cut(s) 544
BsiHKAI GWGCWC 1 cut(s) 734
BsiHKCI CYCGRG 1 cut(s) 717
BsiSI CCGG 4 cut(s) 199, 250, 317, 1151
BslI CCNNNNNNNGG 5 cut(s) 205, 577, 818, 971, 1150
BsmAI GTCTC 3 cut(s) 92, 154, 565
BsmBI CGTCTC 1 cut(s) 92
BsnI GGCC 4 cut(s) 249, 822, 861, 1091
Bso31I GGTCTC 2 cut(s) 154, 565
BsoBI CYCGRG 1 cut(s) 717
Bsp1286I GDGCHC 3 cut(s) 31, 734, 1145
Bsp13I TCCGGA 1 cut(s) 1150
Bsp1407I TGTACA 2 cut(s) 755, 1040
Bsp143I GATC 5 cut(s) 51, 111, 550, 907, 1030
BspACI CCGC 5 cut(s) 206, 275, 377, 823, 993
BspANI GGCC 4 cut(s) 249, 822, 861, 1091
BspCNI CTCAG 2 cut(s) 575, 667
BspDI ATCGAT 1 cut(s) 544
BspEI TCCGGA 1 cut(s) 1150
BspFNI CGCG 1 cut(s) 840
BspHI TCATGA 1 cut(s) 1081
BspLI GGNNCC 2 cut(s) 152, 525
BspMI ACCTGC 1 cut(s) 451
BspPI GGATC 2 cut(s) 46, 1025
BspT107I GGYRCC 2 cut(s) 150, 523
BspTNI GGTCTC 2 cut(s) 154, 565
BsrDI GCAATG 2 cut(s) 180, 648
BsrFI RCCGGY 2 cut(s) 198, 316
BsrGI TGTACA 2 cut(s) 755, 1040
BsrI ACTGG 3 cut(s) 455, 812, 823
BssAI RCCGGY 2 cut(s) 198, 316
BssECI CCNNGG 1 cut(s) 738
BssMI GATC 5 cut(s) 51, 111, 550, 907, 1030
BssNI GRCGYC 2 cut(s) 11, 151
Bst2UI CCWGG 1 cut(s) 1125
Bst4CI ACNGT 4 cut(s) 339, 490, 645, 1106
Bst6I CTCTTC 3 cut(s) 77, 90, 1080
BstACI GRCGYC 2 cut(s) 11, 151
BstAPI GCANNNNNTGC 1 cut(s) 313
BstAUI TGTACA 2 cut(s) 755, 1040
BstC8I GCNNGC 1 cut(s) 859
BstDEI CTNAG 3 cut(s) 562, 675, 1166
BstEII GGTNACC 1 cut(s) 427
BstF5I GGATG 7 cut(s) 400, 460, 498, 636, 862, 1133, 1147
BstFNI CGCG 1 cut(s) 840
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 2 cut(s) 153, 590
BstKTI GATC 5 cut(s) 54, 114, 553, 910, 1033
BstMAI GTCTC 3 cut(s) 92, 154, 565
BstMBI GATC 5 cut(s) 51, 111, 550, 907, 1030
BstMWI GCNNNNNNNGC 6 cut(s) 26, 313, 376, 587, 596, 938
BstNI CCWGG 1 cut(s) 1125
BstNSI RCATGY 3 cut(s) 857, 883, 902
BstPI GGTNACC 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 1123
BstSFI CTRYAG 1 cut(s) 503
BstSLI GKGCMC 1 cut(s) 1145
BstUI CGCG 1 cut(s) 840
BstV1I GCAGC 3 cut(s) 602, 928, 931
BstV2I GAAGAC 2 cut(s) 218, 752
Bsu15I ATCGAT 1 cut(s) 544
Bsu36I CCTNAGG 1 cut(s) 675
BsuI GTATCC 2 cut(s) 285, 1064
BsuRI GGCC 4 cut(s) 249, 822, 861, 1091
BsuTUI ATCGAT 1 cut(s) 544
BtsCI GGATG 7 cut(s) 400, 460, 498, 636, 862, 1133, 1147
BtsIMutI CAGTG 5 cut(s) 231, 462, 486, 816, 1102
BveI ACCTGC 1 cut(s) 451
Cac8I GCNNGC 1 cut(s) 859
CaiI CAGNNNCTG 2 cut(s) 818, 971
CciI TCATGA 1 cut(s) 1081
CfoI GCGC 2 cut(s) 153, 590
Cfr10I RCCGGY 2 cut(s) 198, 316
Cfr13I GGNCC 1 cut(s) 1121
ClaI ATCGAT 1 cut(s) 544
CseI GACGC 1 cut(s) 829
Csp6I GTAC 4 cut(s) 646, 756, 777, 1041
CspAI ACCGGT 1 cut(s) 198
CviQI GTAC 4 cut(s) 646, 756, 777, 1041
DdeI CTNAG 3 cut(s) 562, 675, 1166
DinI GGCGCC 1 cut(s) 152
DpnI GATC 5 cut(s) 53, 113, 552, 909, 1032
DpnII GATC 5 cut(s) 51, 111, 550, 907, 1030
EaeI YGGCCR 1 cut(s) 820
Eam1104I CTCTTC 3 cut(s) 77, 90, 1080
EarI CTCTTC 3 cut(s) 77, 90, 1080
Ecl136II GAGCTC 1 cut(s) 732
Eco147I AGGCCT 1 cut(s) 1091
Eco24I GRGCYC 2 cut(s) 31, 734
Eco31I GGTCTC 2 cut(s) 154, 565
Eco47I GGWCC 1 cut(s) 1121
Eco53kI GAGCTC 1 cut(s) 732
Eco57I CTGAAG 2 cut(s) 939, 1006
Eco81I CCTNAGG 1 cut(s) 675
Eco88I CYCGRG 1 cut(s) 717
Eco91I GGTNACC 1 cut(s) 427
EcoICRI GAGCTC 1 cut(s) 732
EcoO65I GGTNACC 1 cut(s) 427
EcoRI GAATTC 1 cut(s) 786
EcoRII CCWGG 1 cut(s) 1123
EcoT38I GRGCYC 2 cut(s) 31, 734
EgeI GGCGCC 1 cut(s) 152
EheI GGCGCC 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 92
FauI CCCGC 1 cut(s) 199
Fnu4HI GCNGC 4 cut(s) 591, 823, 942, 945
FokI GGATG 7 cut(s) 407, 447, 485, 643, 849, 1134, 1140
FriOI GRGCYC 2 cut(s) 31, 734
Fsp4HI GCNGC 4 cut(s) 591, 823, 942, 945
FspBI CTAG 4 cut(s) 24, 582, 768, 1171
GlaI GCGC 2 cut(s) 152, 589
GluI GCNGC 4 cut(s) 591, 823, 942, 945
GsuI CTGGAG 1 cut(s) 948
HaeII RGCGCY 1 cut(s) 154
HaeIII GGCC 4 cut(s) 249, 822, 861, 1091
HapII CCGG 4 cut(s) 199, 250, 317, 1151
HgaI GACGC 1 cut(s) 829
HhaI GCGC 2 cut(s) 153, 590
Hin1I GRCGYC 2 cut(s) 11, 151
Hin6I GCGC 2 cut(s) 151, 588
HinP1I GCGC 2 cut(s) 151, 588
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 6 cut(s) 253, 538, 567, 657, 771, 1007
HpaII CCGG 4 cut(s) 199, 250, 317, 1151
HphI GGTGA 2 cut(s) 421, 1025
Hpy166II GTNNAC 6 cut(s) 223, 231, 440, 765, 809, 1041
Hpy188I TCNGA 4 cut(s) 63, 537, 792, 834
Hpy188III TCNNGA 9 cut(s) 257, 407, 564, 674, 719, 953, 1082, 1119, 1151
Hpy8I GTNNAC 6 cut(s) 223, 231, 440, 765, 809, 1041
Hpy99I CGWCG 3 cut(s) 13, 16, 343
HpyAV CCTTC 4 cut(s) 334, 716, 720, 914
HpyCH4III ACNGT 4 cut(s) 339, 490, 645, 1106
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 8 cut(s) 34, 42, 364, 446, 460, 653, 850, 857
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 313, 376, 587, 596, 938
HpyF3I CTNAG 3 cut(s) 562, 675, 1166
HpySE526I ACGT 1 cut(s) 11
Hsp92I GRCGYC 2 cut(s) 11, 151
HspAI GCGC 2 cut(s) 151, 588
KasI GGCGCC 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 1150
Kzo9I GATC 5 cut(s) 51, 111, 550, 907, 1030
LmnI GCTCC 3 cut(s) 682, 729, 1066
Lsp1109I GCAGC 3 cut(s) 602, 928, 931
LweI GCATC 5 cut(s) 455, 469, 507, 685, 1169
MaeI CTAG 4 cut(s) 24, 582, 768, 1171
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 3 cut(s) 257, 427, 814
MalI GATC 5 cut(s) 53, 113, 552, 909, 1032
MboI GATC 5 cut(s) 51, 111, 550, 907, 1030
MboII GAAGA 7 cut(s) 94, 100, 107, 223, 757, 1016, 1097
MhlI GDGCHC 3 cut(s) 31, 734, 1145
MluCI AATT 7 cut(s) 36, 46, 131, 140, 402, 786, 1045
MluI ACGCGT 1 cut(s) 838
Mly113I GGCGCC 1 cut(s) 151
MlyI GAGTC 2 cut(s) 561, 666
MroI TCCGGA 1 cut(s) 1150
MseI TTAA 3 cut(s) 192, 279, 333
MslI CAYNNNNRTG 3 cut(s) 369, 465, 903
MspA1I CMGCKG 1 cut(s) 917
MspI CCGG 4 cut(s) 199, 250, 317, 1151
MspR9I CCNGG 1 cut(s) 1125
MvaI CCWGG 1 cut(s) 1125
MvnI CGCG 1 cut(s) 840
MwoI GCNNNNNNNGC 6 cut(s) 26, 313, 376, 587, 596, 938
NarI GGCGCC 1 cut(s) 151
NdeII GATC 5 cut(s) 51, 111, 550, 907, 1030
NlaIV GGNNCC 2 cut(s) 152, 525
NmuCI GTSAC 3 cut(s) 257, 427, 814
NspI RCATGY 3 cut(s) 857, 883, 902
PaeR7I CTCGAG 1 cut(s) 717
PagI TCATGA 1 cut(s) 1081
PceI AGGCCT 1 cut(s) 1091
PciI ACATGT 1 cut(s) 898
PcsI WCGNNNNNNNCGW 1 cut(s) 550
PfeI GAWTC 4 cut(s) 253, 538, 771, 1007
PflMI CCANNNNNTGG 2 cut(s) 818, 971
PinAI ACCGGT 1 cut(s) 198
PkrI GCNGC 4 cut(s) 592, 824, 943, 946
PleI GAGTC 2 cut(s) 561, 665
PluTI GGCGCC 1 cut(s) 154
PpsI GAGTC 2 cut(s) 561, 665
PscI ACATGT 1 cut(s) 898
Psp124BI GAGCTC 1 cut(s) 734
Psp6I CCWGG 1 cut(s) 1123
PspEI GGTNACC 1 cut(s) 427
PspGI CCWGG 1 cut(s) 1123
PspN4I GGNNCC 2 cut(s) 152, 525
PspPI GGNCC 1 cut(s) 1121
PstNI CAGNNNCTG 2 cut(s) 818, 971
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 4 cut(s) 647, 757, 778, 1042
RsaNI GTAC 4 cut(s) 646, 756, 777, 1041
RseI CAYNNNNRTG 3 cut(s) 369, 465, 903
SacI GAGCTC 1 cut(s) 734
SaqAI TTAA 3 cut(s) 192, 279, 333
SatI GCNGC 4 cut(s) 591, 823, 942, 945
Sau3AI GATC 5 cut(s) 51, 111, 550, 907, 1030
Sau96I GGNCC 1 cut(s) 1121
SchI GAGTC 2 cut(s) 561, 666
ScrFI CCNGG 1 cut(s) 1125
SduI GDGCHC 3 cut(s) 31, 734, 1145
SfaNI GCATC 5 cut(s) 455, 469, 507, 685, 1169
SfcI CTRYAG 1 cut(s) 503
SfoI GGCGCC 1 cut(s) 152
Sfr274I CTCGAG 1 cut(s) 717
SinI GGWCC 1 cut(s) 1121
SlaI CTCGAG 1 cut(s) 717
SmiMI CAYNNNNRTG 3 cut(s) 369, 465, 903
SmlI CTYRAG 1 cut(s) 717
SmoI CTYRAG 1 cut(s) 717
Sse9I AATT 7 cut(s) 36, 46, 131, 140, 402, 786, 1045
SseBI AGGCCT 1 cut(s) 1091
SsiI CCGC 5 cut(s) 206, 275, 377, 823, 993
SspDI GGCGCC 1 cut(s) 150
SspMI CTAG 4 cut(s) 24, 582, 768, 1171
SstI GAGCTC 1 cut(s) 734
StuI AGGCCT 1 cut(s) 1091
StyD4I CCNGG 1 cut(s) 1123
TaaI ACNGT 4 cut(s) 339, 490, 645, 1106
TaiI ACGT 1 cut(s) 14
TaqI TCGA 2 cut(s) 544, 718
TasI AATT 7 cut(s) 36, 46, 131, 140, 402, 786, 1045
TatI WGTACW 3 cut(s) 645, 755, 1040
TauI GCSGC 1 cut(s) 825
TfiI GAWTC 4 cut(s) 253, 538, 771, 1007
Tru1I TTAA 3 cut(s) 192, 279, 333
Tru9I TTAA 3 cut(s) 192, 279, 333
TscAI CASTG 5 cut(s) 238, 462, 493, 823, 1109
TseFI GTSAC 3 cut(s) 257, 427, 814
TseI GCWGC 3 cut(s) 590, 941, 944
Tsp45I GTSAC 3 cut(s) 257, 427, 814
TspDTI ATGAA 8 cut(s) 95, 169, 316, 387, 530, 626, 1017, 1098
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 5 cut(s) 238, 462, 493, 823, 1109
Van91I CCANNNNNTGG 2 cut(s) 818, 971
VpaK11BI GGWCC 1 cut(s) 1121
XapI RAATTY 5 cut(s) 36, 46, 131, 402, 786
XceI RCATGY 3 cut(s) 857, 883, 902
XcmI CCANNNNNNNNNTGG 1 cut(s) 1152
XhoI CTCGAG 1 cut(s) 717
XspI CTAG 4 cut(s) 24, 582, 768, 1171
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.