Rh7AG102400

Responsible for synthesis of pseudouridine from uracil

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0009164
Physical Location & Seq
Reverse (-)
7969028 .. 7972796
3769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG102400.1

Sequence Viewer

Length: 912 bp
ATGCCAACGACGTCGTTTGCGTCTAGGGCTCTGCAAATTTGCAAAAATCTGATCCCAAATCGGAATAAAAGAGGAAAAATGAAGAGGAAGATAGAAGAGACGGACATGGAGATCGTCTGGCAATCGCCGGCGAACCCTCCGGAACGGAAAGATTACATCTTTCGCAACGGGAGGCGCCATGTGAGACCCTACTACTTTGAGTTCATTGCTCATGTTAAGAAGCGGTGGGCGGGGAAGACCATCGTTGACTTGTTCACTGACGAGTTCAAAGGCCGGAATCGTGACTACTATATTAGTGCGGTTAAATGTGGGAGGATACAAGTTGATGGGCAACTTGTGCCGGTTTCCTTCATAGTTAAACCGTCGCAAAAGATAAGCCACTTCCTGCACAGGCATGAACCGCCCGTGATGACTTGGGATGTGAAAATTCTTGAAACAGAACCCGATGTGGTCACCATTTGTAAACCTGCATCTGTTCCAGTGCATCCATGTGGTCAGTATCGTAAGAACACTGTTGTTGGCATCCTACAGGCAGAGCATGGCTTGGCACCTCTATTTCCGATTCATCGATTAGATCGTCTGGTCTCAGGACTCCTTATCTTGGCTAGAAGCGCAGCACAAGCTGACATTTTCAGGCAACAGATTGAGGGAGGGATGGTTCATAAACAGTACATTGCAAGAGTCATTGGAGAGTTTCCTGAGGAGGAGCAAGTTGTAGATGCTAACATAAATCATAATGCTCGAGAAGGAAGGAGCTCTACCGAGGTCGGTGATTCTTGTGGTGATGCTCCCACAAAGGGGAAGACTGCTTGTACAAAGTTTACTAGAATCAGTACGAATGGAATTCAGAGCATTGTCTTGTGTGAACCAGTCACTGGCCGCACTCATCAGGTAATCAAATTAACTAATTAA

Protein Analysis

303

Amino Acids

34.35

Weight (kDa)

9.56

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PseudoU_synth_2 PF00849 149 - 298 1.4e-24 RNA pseudouridylate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 475
AccB1I GGYRCC 2 cut(s) 174, 547
AccB7I CCANNNNNTGG 1 cut(s) 875
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 5 cut(s) 223, 230, 299, 401, 880
AclWI GGATC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 877
AcsI RAATTY 3 cut(s) 36, 426, 843
AcyI GRCGYC 2 cut(s) 11, 175
AfaI GTAC 3 cut(s) 671, 814, 835
AfiI CCNNNNNNNGG 4 cut(s) 601, 797, 798, 875
AgsI TTSAA 2 cut(s) 268, 434
AloI GAACNNNNNNTCC 2 cut(s) 642, 674
AluBI AGCT 2 cut(s) 623, 756
AluI AGCT 2 cut(s) 623, 756
Alw21I GWGCWC 1 cut(s) 758
Alw26I GTCTC 3 cut(s) 92, 178, 589
AlwI GGATC 1 cut(s) 46
AlwNI CAGNNNCTG 1 cut(s) 875
Ama87I CYCGRG 1 cut(s) 741
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 2 cut(s) 271, 877
ApeKI GCWGC 1 cut(s) 614
ApoI RAATTY 3 cut(s) 36, 426, 843
AspLEI GCGC 2 cut(s) 177, 614
AsuHPI GGTGA 3 cut(s) 445, 782, 794
AvaI CYCGRG 1 cut(s) 741
AxyI CCTNAGG 1 cut(s) 699
BanI GGYRCC 2 cut(s) 174, 547
BanII GRGCYC 2 cut(s) 31, 758
BarI GAAGNNNNNNTAC 2 cut(s) 742, 774
BbsI GAAGAC 2 cut(s) 242, 809
Bbv12I GWGCWC 1 cut(s) 758
BbvI GCAGC 1 cut(s) 626
BccI CCATC 3 cut(s) 248, 320, 649
BciVI GTATCC 1 cut(s) 309
BcoDI GTCTC 3 cut(s) 92, 178, 589
BfaI CTAG 3 cut(s) 24, 606, 825
BfmI CTRYAG 1 cut(s) 527
BfoI RGCGCY 1 cut(s) 178
BfuAI ACCTGC 1 cut(s) 475
BfuI GTATCC 1 cut(s) 309
BisI GCNGC 2 cut(s) 615, 880
BlsI GCNGC 2 cut(s) 616, 881
BmeT110I CYCGRG 1 cut(s) 741
BmiI GGNNCC 2 cut(s) 176, 549
BmsI GCATC 5 cut(s) 479, 493, 531, 709, 775
BpiI GAAGAC 2 cut(s) 242, 809
Bsa29I ATCGAT 1 cut(s) 568
BsaHI GRCGYC 2 cut(s) 11, 175
BsaI GGTCTC 2 cut(s) 178, 589
BsaJI CCNNGG 1 cut(s) 762
BsaWI WCCGGW 1 cut(s) 139
BsaXI ACNNNNNCTCC 2 cut(s) 642, 672
Bsc4I CCNNNNNNNGG 4 cut(s) 601, 797, 798, 875
Bse118I RCCGGY 2 cut(s) 127, 340
Bse1I ACTGG 3 cut(s) 479, 869, 880
Bse21I CCTNAGG 1 cut(s) 699
Bse3DI GCAATG 2 cut(s) 204, 672
BseAI TCCGGA 1 cut(s) 139
BseCI ATCGAT 1 cut(s) 568
BseDI CCNNGG 1 cut(s) 762
BseGI GGATG 4 cut(s) 424, 484, 522, 660
BseLI CCNNNNNNNGG 4 cut(s) 601, 797, 798, 875
BseMI GCAATG 2 cut(s) 204, 672
BseMII CTCAG 2 cut(s) 600, 690
BseNI ACTGG 3 cut(s) 479, 869, 880
BseRI GAGGAG 2 cut(s) 716, 719
BseXI GCAGC 1 cut(s) 626
BsgI GTGCAG 1 cut(s) 371
BshFI GGCC 2 cut(s) 273, 879
BshNI GGYRCC 2 cut(s) 174, 547
BshVI ATCGAT 1 cut(s) 568
BsiHKAI GWGCWC 1 cut(s) 758
BsiHKCI CYCGRG 1 cut(s) 741
BsiSI CCGG 4 cut(s) 128, 140, 274, 341
BslI CCNNNNNNNGG 4 cut(s) 601, 797, 798, 875
BsmAI GTCTC 3 cut(s) 92, 178, 589
BsmBI CGTCTC 1 cut(s) 92
BsnI GGCC 2 cut(s) 273, 879
Bso31I GGTCTC 2 cut(s) 178, 589
BsoBI CYCGRG 1 cut(s) 741
Bsp1286I GDGCHC 2 cut(s) 31, 758
Bsp13I TCCGGA 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 812
Bsp143I GATC 3 cut(s) 51, 111, 574
BspACI CCGC 5 cut(s) 223, 230, 299, 401, 880
BspANI GGCC 2 cut(s) 273, 879
BspCNI CTCAG 2 cut(s) 599, 691
BspDI ATCGAT 1 cut(s) 568
BspEI TCCGGA 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 176, 549
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 1 cut(s) 46
BspT107I GGYRCC 2 cut(s) 174, 547
BspTNI GGTCTC 2 cut(s) 178, 589
BsrDI GCAATG 2 cut(s) 204, 672
BsrFI RCCGGY 2 cut(s) 127, 340
BsrGI TGTACA 1 cut(s) 812
BsrI ACTGG 3 cut(s) 479, 869, 880
BssAI RCCGGY 2 cut(s) 127, 340
BssECI CCNNGG 1 cut(s) 762
BssMI GATC 3 cut(s) 51, 111, 574
BssNI GRCGYC 2 cut(s) 11, 175
Bst4CI ACNGT 3 cut(s) 363, 514, 669
Bst6I CTCTTC 2 cut(s) 77, 90
BstACI GRCGYC 2 cut(s) 11, 175
BstAPI GCANNNNNTGC 1 cut(s) 337
BstAUI TGTACA 1 cut(s) 812
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 586, 699
BstEII GGTNACC 1 cut(s) 451
BstF5I GGATG 4 cut(s) 424, 484, 522, 660
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 2 cut(s) 177, 614
BstKTI GATC 3 cut(s) 54, 114, 577
BstMAI GTCTC 3 cut(s) 92, 178, 589
BstMBI GATC 3 cut(s) 51, 111, 574
BstMWI GCNNNNNNNGC 5 cut(s) 26, 337, 400, 611, 620
BstPI GGTNACC 1 cut(s) 451
BstSFI CTRYAG 1 cut(s) 527
BstV1I GCAGC 1 cut(s) 626
BstV2I GAAGAC 2 cut(s) 242, 809
Bsu15I ATCGAT 1 cut(s) 568
Bsu36I CCTNAGG 1 cut(s) 699
BsuI GTATCC 1 cut(s) 309
BsuRI GGCC 2 cut(s) 273, 879
BsuTUI ATCGAT 1 cut(s) 568
BtsCI GGATG 4 cut(s) 424, 484, 522, 660
BtsIMutI CAGTG 4 cut(s) 255, 486, 510, 873
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 1 cut(s) 129
CaiI CAGNNNCTG 1 cut(s) 875
CfoI GCGC 2 cut(s) 177, 614
Cfr10I RCCGGY 2 cut(s) 127, 340
ClaI ATCGAT 1 cut(s) 568
CseI GACGC 1 cut(s) 9
Csp6I GTAC 3 cut(s) 670, 813, 834
CviAII CATG 6 cut(s) 106, 179, 212, 395, 489, 539
CviJI RGCY 8 cut(s) 29, 273, 378, 543, 605, 623, 756, 879
CviKI_1 RGCY 8 cut(s) 29, 273, 378, 543, 605, 623, 756, 879
CviQI GTAC 3 cut(s) 670, 813, 834
DdeI CTNAG 2 cut(s) 586, 699
DinI GGCGCC 1 cut(s) 176
DpnI GATC 3 cut(s) 53, 113, 576
DpnII GATC 3 cut(s) 51, 111, 574
EaeI YGGCCR 1 cut(s) 877
Eam1104I CTCTTC 2 cut(s) 77, 90
EarI CTCTTC 2 cut(s) 77, 90
Ecl136II GAGCTC 1 cut(s) 756
Eco24I GRGCYC 2 cut(s) 31, 758
Eco31I GGTCTC 2 cut(s) 178, 589
Eco53kI GAGCTC 1 cut(s) 756
Eco81I CCTNAGG 1 cut(s) 699
Eco88I CYCGRG 1 cut(s) 741
Eco91I GGTNACC 1 cut(s) 451
EcoICRI GAGCTC 1 cut(s) 756
EcoO65I GGTNACC 1 cut(s) 451
EcoRI GAATTC 1 cut(s) 843
EcoT38I GRGCYC 2 cut(s) 31, 758
EgeI GGCGCC 1 cut(s) 176
EheI GGCGCC 1 cut(s) 176
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 6 cut(s) 109, 182, 215, 398, 492, 542
FatI CATG 6 cut(s) 105, 178, 211, 394, 488, 538
FauI CCCGC 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 615, 880
FokI GGATG 4 cut(s) 431, 471, 509, 667
FriOI GRGCYC 2 cut(s) 31, 758
Fsp4HI GCNGC 2 cut(s) 615, 880
FspBI CTAG 3 cut(s) 24, 606, 825
GlaI GCGC 2 cut(s) 176, 613
GluI GCNGC 2 cut(s) 615, 880
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 2 cut(s) 273, 879
HapII CCGG 4 cut(s) 128, 140, 274, 341
HgaI GACGC 1 cut(s) 9
HhaI GCGC 2 cut(s) 177, 614
Hin1I GRCGYC 2 cut(s) 11, 175
Hin1II CATG 6 cut(s) 109, 182, 215, 398, 492, 542
Hin6I GCGC 2 cut(s) 175, 612
HinP1I GCGC 2 cut(s) 175, 612
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 6 cut(s) 277, 562, 591, 681, 773, 828
HpaII CCGG 4 cut(s) 128, 140, 274, 341
HphI GGTGA 3 cut(s) 445, 782, 794
Hpy166II GTNNAC 5 cut(s) 247, 255, 464, 822, 866
Hpy188I TCNGA 4 cut(s) 51, 63, 561, 849
Hpy188III TCNNGA 6 cut(s) 140, 281, 431, 588, 698, 743
Hpy8I GTNNAC 5 cut(s) 247, 255, 464, 822, 866
Hpy99I CGWCG 3 cut(s) 13, 16, 367
HpyAV CCTTC 3 cut(s) 358, 740, 744
HpyCH4III ACNGT 3 cut(s) 363, 514, 669
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 6 cut(s) 34, 42, 388, 470, 484, 677
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 337, 400, 611, 620
HpyF3I CTNAG 2 cut(s) 586, 699
HpySE526I ACGT 1 cut(s) 11
Hsp92I GRCGYC 2 cut(s) 11, 175
Hsp92II CATG 6 cut(s) 109, 182, 215, 398, 492, 542
HspAI GCGC 2 cut(s) 175, 612
KasI GGCGCC 1 cut(s) 174
Kpn2I TCCGGA 1 cut(s) 139
KroI GCCGGC 1 cut(s) 127
KroNI GCCGGC 1 cut(s) 129
Kzo9I GATC 3 cut(s) 51, 111, 574
LmnI GCTCC 3 cut(s) 706, 753, 793
Lsp1109I GCAGC 1 cut(s) 626
LweI GCATC 5 cut(s) 479, 493, 531, 709, 775
MaeI CTAG 3 cut(s) 24, 606, 825
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 3 cut(s) 281, 451, 871
MalI GATC 3 cut(s) 53, 113, 576
MboI GATC 3 cut(s) 51, 111, 574
MboII GAAGA 5 cut(s) 94, 100, 107, 247, 814
MhlI GDGCHC 2 cut(s) 31, 758
MluCI AATT 5 cut(s) 36, 426, 843, 899, 907
Mly113I GGCGCC 1 cut(s) 175
MlyI GAGTC 2 cut(s) 585, 690
MreI CGCCGGCG 1 cut(s) 127
MroI TCCGGA 1 cut(s) 139
MroNI GCCGGC 1 cut(s) 127
MseI TTAA 5 cut(s) 216, 303, 357, 902, 910
MslI CAYNNNNRTG 2 cut(s) 393, 489
MspI CCGG 4 cut(s) 128, 140, 274, 341
MwoI GCNNNNNNNGC 5 cut(s) 26, 337, 400, 611, 620
NaeI GCCGGC 1 cut(s) 129
NarI GGCGCC 1 cut(s) 175
NdeII GATC 3 cut(s) 51, 111, 574
NgoMIV GCCGGC 1 cut(s) 127
NlaIII CATG 6 cut(s) 109, 182, 215, 398, 492, 542
NlaIV GGNNCC 2 cut(s) 176, 549
NmuCI GTSAC 3 cut(s) 281, 451, 871
PaeR7I CTCGAG 1 cut(s) 741
PcsI WCGNNNNNNNCGW 2 cut(s) 17, 574
PdiI GCCGGC 1 cut(s) 129
PfeI GAWTC 4 cut(s) 277, 562, 773, 828
PflMI CCANNNNNTGG 1 cut(s) 875
PkrI GCNGC 2 cut(s) 616, 881
PleI GAGTC 2 cut(s) 585, 689
PluTI GGCGCC 1 cut(s) 178
PpsI GAGTC 2 cut(s) 585, 689
Psp124BI GAGCTC 1 cut(s) 758
PspEI GGTNACC 1 cut(s) 451
PspN4I GGNNCC 2 cut(s) 176, 549
PstNI CAGNNNCTG 1 cut(s) 875
RsaI GTAC 3 cut(s) 671, 814, 835
RsaNI GTAC 3 cut(s) 670, 813, 834
RseI CAYNNNNRTG 2 cut(s) 393, 489
SacI GAGCTC 1 cut(s) 758
SaqAI TTAA 5 cut(s) 216, 303, 357, 902, 910
SatI GCNGC 2 cut(s) 615, 880
Sau3AI GATC 3 cut(s) 51, 111, 574
SchI GAGTC 2 cut(s) 585, 690
SduI GDGCHC 2 cut(s) 31, 758
SetI ASST 7 cut(s) 14, 469, 553, 625, 758, 768, 894
SfaNI GCATC 5 cut(s) 479, 493, 531, 709, 775
SfcI CTRYAG 1 cut(s) 527
SfoI GGCGCC 1 cut(s) 176
Sfr274I CTCGAG 1 cut(s) 741
SgrAI CRCCGGYG 1 cut(s) 127
SlaI CTCGAG 1 cut(s) 741
SmiMI CAYNNNNRTG 2 cut(s) 393, 489
SmlI CTYRAG 1 cut(s) 741
SmoI CTYRAG 1 cut(s) 741
Sse9I AATT 5 cut(s) 36, 426, 843, 899, 907
SsiI CCGC 5 cut(s) 223, 230, 299, 401, 880
SspDI GGCGCC 1 cut(s) 174
SspMI CTAG 3 cut(s) 24, 606, 825
SstI GAGCTC 1 cut(s) 758
TaaI ACNGT 3 cut(s) 363, 514, 669
TaiI ACGT 1 cut(s) 14
TaqI TCGA 2 cut(s) 568, 742
TasI AATT 5 cut(s) 36, 426, 843, 899, 907
TatI WGTACW 2 cut(s) 669, 812
TauI GCSGC 1 cut(s) 882
TfiI GAWTC 4 cut(s) 277, 562, 773, 828
Tru1I TTAA 5 cut(s) 216, 303, 357, 902, 910
Tru9I TTAA 5 cut(s) 216, 303, 357, 902, 910
TscAI CASTG 4 cut(s) 262, 486, 517, 880
TseFI GTSAC 3 cut(s) 281, 451, 871
TseI GCWGC 1 cut(s) 614
Tsp45I GTSAC 3 cut(s) 281, 451, 871
TspDTI ATGAA 6 cut(s) 95, 193, 340, 411, 554, 650
TspGWI ACGGA 2 cut(s) 116, 160
TspRI CASTG 4 cut(s) 262, 486, 517, 880
Van91I CCANNNNNTGG 1 cut(s) 875
XapI RAATTY 3 cut(s) 36, 426, 843
XhoI CTCGAG 1 cut(s) 741
XspI CTAG 3 cut(s) 24, 606, 825
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.