pycom06g12800

Responsible for synthesis of pseudouridine from uracil

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
17907326 .. 17910472
3147 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g12800.8

Sequence Viewer

Length: 1152 bp
ATGAAGAGTAGAAAGGAAGAGAAGGCCATGGAGATCGTGTGGCAGACTCCGGAGATTCGGCCACAACGGCAAGATTACATCTTTCGCGACGGGAGGCGCCATGTCAGACCCTACAACTTCGAGTTCATCTGTCATGTGAAGAAACGGTGGGCGGGGAAGACCATCGTTGACTTGTTCACCGATGAGTTCAAAGGCCGGCCTTATGATTACTATGTTAGTGCAGTGAAATCTGGAAGGATACAGGTTGAGGGAGTGATGGTGCCGGTTTCCTACATTGTTAAAACGTCGCAAAAGATAAGCCACTTCGTCCACAGGCATGAGCCGCCAGTGATGACTTGTGACATATCTATTCTCCAAGAAGAACCGGATGTGGTTGTCGTTTGTAAACCTGCATCTGTTCCGGTGCATTCATGTGGTCAATATCGTAAGAACACCGTTGTTGGGATCCTTGAGGCTGAGCATGGCCTGGCACCTCTGTTCCCGATTCATCGACTAGATCGCCTTGTCTCAGGACTCCTTATCTTGGCCAAAAGTTCTTCAAAAGCCAACTATTTTAGGCAACAGATTGAAGGAGGGATGGTCCAGAAACAGTACATTGCAAGAGTTGCTGGAGAATTTCCTGAGCAGGAGCAACTTGTAGATGCTAACGTTATTCATGATCGTCGAGAATGTAGGAGCACAGCAGAGGTTAGTGATTTATGTGATGATACACTCATCAAGGGGAAGACTGCCTGTACAAAGTTTACTAGACTCAGTACCAATGGAATTCACAGTCTTGTCTTGTGTGAACCAGTCACTGGCCGAACTCATCAAATACGTGTCCATTTGCAACATGTAGGCTATCCGATAGCCAATGACATGCTTTATCTGTCCAAACATGTTAATGGTCGTTCAACTGAAGGAATGGGTGCTGATAGAACCGCTGTAAATTCCAGGCCCTTTCTGACATCCGGGTTTTGTGAAAATTTATCCACTGGACATGTAGACCCCAATGAAGATTTCAGCATTGATCCCATGTGTACAAATTGTCCGAATTTGGTTCCAAAAGGATACGATGTTCATGAAGAGGCTTTGTGGCTGCACTGTGTTCGATATTCTGCACCCGGATGGACTTATGAATGCCCGTATCCGGATTGGGCATCAGTAACCTAA

Protein Analysis

384

Amino Acids

43.53

Weight (kDa)

7.59

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 397
AccB1I GGYRCC 3 cut(s) 96, 259, 469
AccB7I CCANNNNNTGG 1 cut(s) 797
AccI GTMKAC 1 cut(s) 984
AccII CGCG 1 cut(s) 87
AccIII TCCGGA 2 cut(s) 49, 1129
AciI CCGC 3 cut(s) 152, 323, 921
AclI AACGTT 1 cut(s) 648
AclWI GGATC 3 cut(s) 439, 452, 1004
AcoI YGGCCR 3 cut(s) 59, 525, 799
AcsI RAATTY 5 cut(s) 614, 765, 928, 964, 1033
AcuI CTGAAG 1 cut(s) 918
AcyI GRCGYC 1 cut(s) 97
AfaI GTAC 4 cut(s) 593, 736, 757, 1021
AfiI CCNNNNNNNGG 4 cut(s) 441, 523, 797, 1129
AflIII ACRYGT 4 cut(s) 817, 832, 877, 979
AgsI TTSAA 4 cut(s) 190, 540, 569, 894
AjnI CCWGG 2 cut(s) 465, 932
AjuI GAANNNNNNNTTGG 2 cut(s) 983, 1015
AloI GAACNNNNNNTCC 2 cut(s) 1041, 1073
Alw21I GWGCWC 1 cut(s) 680
Alw26I GTCTC 1 cut(s) 511
AlwI GGATC 3 cut(s) 439, 452, 1004
AlwNI CAGNNNCTG 1 cut(s) 797
Aor13HI TCCGGA 2 cut(s) 49, 1129
AoxI GGCC 8 cut(s) 24, 59, 193, 197, 463, 525, 799, 935
ApeKI GCWGC 1 cut(s) 1078
ApoI RAATTY 5 cut(s) 614, 765, 928, 964, 1033
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 580, 936
AsuC2I CCSGG 2 cut(s) 952, 1104
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 580
BalI TGGCCA 1 cut(s) 527
BamHI GGATCC 1 cut(s) 444
BanI GGYRCC 3 cut(s) 96, 259, 469
BbsI GAAGAC 2 cut(s) 164, 731
Bbv12I GWGCWC 1 cut(s) 680
BbvI GCAGC 1 cut(s) 1065
BccI CCATC 4 cut(s) 170, 250, 571, 1101
BceAI ACGGC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 1070, 1104
BciT130I CCWGG 2 cut(s) 467, 934
BciVI GTATCC 3 cut(s) 231, 1043, 1137
BcnI CCSGG 2 cut(s) 952, 1104
BcoDI GTCTC 1 cut(s) 511
BfaI CTAG 2 cut(s) 494, 747
BfoI RGCGCY 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 397
BfuI GTATCC 3 cut(s) 231, 1043, 1137
BglI GCCNNNNNGGC 1 cut(s) 67
BisI GCNGC 2 cut(s) 323, 1079
BlpI GCTNAGC 1 cut(s) 456
BlsI GCNGC 2 cut(s) 324, 1080
Bme1390I CCNGG 4 cut(s) 467, 934, 952, 1104
Bme18I GGWCC 1 cut(s) 580
BmgT120I GGNCC 2 cut(s) 580, 936
BmiI GGNNCC 5 cut(s) 98, 261, 446, 471, 1041
BmrFI CCNGG 4 cut(s) 467, 934, 952, 1104
BmsI GCATC 3 cut(s) 401, 631, 1148
BpiI GAAGAC 2 cut(s) 164, 731
BpmI CTGGAG 1 cut(s) 630
Bpu10I CCTNAGC 1 cut(s) 621
Bpu1102I GCTNAGC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 470
BpuMI CCSGG 2 cut(s) 952, 1104
BsaAI YACGTR 1 cut(s) 818
BsaHI GRCGYC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 4 cut(s) 49, 364, 400, 1129
BsaXI ACNNNNNCTCC 6 cut(s) 23, 53, 243, 273, 564, 594
Bsc4I CCNNNNNNNGG 4 cut(s) 441, 523, 797, 1129
Bse118I RCCGGY 2 cut(s) 195, 262
Bse1I ACTGG 4 cut(s) 326, 791, 802, 979
Bse3DI GCAATG 1 cut(s) 594
BseAI TCCGGA 2 cut(s) 49, 1129
BseBI CCWGG 2 cut(s) 467, 934
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 4 cut(s) 373, 582, 947, 1112
BseLI CCNNNNNNNGG 4 cut(s) 441, 523, 797, 1129
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 4 cut(s) 447, 522, 612, 766
BseNI ACTGG 4 cut(s) 326, 791, 802, 979
BseXI GCAGC 1 cut(s) 1065
BsgI GTGCAG 3 cut(s) 240, 1064, 1083
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 8 cut(s) 26, 61, 195, 199, 465, 527, 801, 937
BshNI GGYRCC 3 cut(s) 96, 259, 469
BsiHKAI GWGCWC 1 cut(s) 680
BsiSI CCGG 8 cut(s) 50, 196, 263, 365, 401, 951, 1104, 1130
BslI CCNNNNNNNGG 4 cut(s) 441, 523, 797, 1129
BsmAI GTCTC 1 cut(s) 511
BsmI GAATGC 2 cut(s) 406, 1124
BsnI GGCC 8 cut(s) 26, 61, 195, 199, 465, 527, 801, 937
Bsp1286I GDGCHC 1 cut(s) 680
Bsp13I TCCGGA 2 cut(s) 49, 1129
Bsp1407I TGTACA 2 cut(s) 734, 1019
Bsp143I GATC 5 cut(s) 33, 444, 496, 658, 1009
Bsp1720I GCTNAGC 1 cut(s) 456
Bsp19I CCATGG 1 cut(s) 27
Bsp68I TCGCGA 1 cut(s) 87
BspACI CCGC 3 cut(s) 152, 323, 921
BspANI GGCC 8 cut(s) 26, 61, 195, 199, 465, 527, 801, 937
BspCNI CTCAG 4 cut(s) 448, 521, 613, 765
BspEI TCCGGA 2 cut(s) 49, 1129
BspFNI CGCG 1 cut(s) 87
BspHI TCATGA 2 cut(s) 655, 1060
BspLI GGNNCC 5 cut(s) 98, 261, 446, 471, 1041
BspMI ACCTGC 1 cut(s) 397
BspPI GGATC 3 cut(s) 439, 452, 1004
BspT107I GGYRCC 3 cut(s) 96, 259, 469
BsrDI GCAATG 1 cut(s) 594
BsrFI RCCGGY 2 cut(s) 195, 262
BsrGI TGTACA 2 cut(s) 734, 1019
BsrI ACTGG 4 cut(s) 326, 791, 802, 979
BssAI RCCGGY 2 cut(s) 195, 262
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 5 cut(s) 33, 444, 496, 658, 1009
BssNI GRCGYC 1 cut(s) 97
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 2 cut(s) 467, 934
Bst4CI ACNGT 5 cut(s) 147, 436, 591, 773, 1085
Bst6I CTCTTC 2 cut(s) 12, 1059
BstACI GRCGYC 1 cut(s) 97
BstAPI GCANNNNNTGC 1 cut(s) 605
BstAUI TGTACA 2 cut(s) 734, 1019
BstBAI YACGTR 1 cut(s) 818
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 4 cut(s) 456, 508, 621, 752
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 4 cut(s) 373, 582, 947, 1112
BstFNI CGCG 1 cut(s) 87
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 5 cut(s) 36, 447, 499, 661, 1012
BstMAI GTCTC 1 cut(s) 511
BstMBI GATC 5 cut(s) 33, 444, 496, 658, 1009
BstMWI GCNNNNNNNGC 3 cut(s) 67, 322, 605
BstNI CCWGG 2 cut(s) 467, 934
BstNSI RCATGY 4 cut(s) 836, 862, 881, 983
BstSCI CCNGG 4 cut(s) 465, 932, 950, 1102
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 1065
BstV2I GAAGAC 2 cut(s) 164, 731
BstX2I RGATCY 1 cut(s) 444
BstYI RGATCY 1 cut(s) 444
BsuI GTATCC 3 cut(s) 231, 1043, 1137
BsuRI GGCC 8 cut(s) 26, 61, 195, 199, 465, 527, 801, 937
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 4 cut(s) 373, 582, 947, 1112
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 5 cut(s) 228, 333, 795, 972, 1081
BtuMI TCGCGA 1 cut(s) 87
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 197
CaiI CAGNNNCTG 1 cut(s) 797
CciI TCATGA 2 cut(s) 655, 1060
CfoI GCGC 1 cut(s) 99
Cfr10I RCCGGY 2 cut(s) 195, 262
Cfr13I GGNCC 2 cut(s) 580, 936
Csp6I GTAC 4 cut(s) 592, 735, 756, 1020
CviQI GTAC 4 cut(s) 592, 735, 756, 1020
DdeI CTNAG 4 cut(s) 456, 508, 621, 752
DinI GGCGCC 1 cut(s) 98
DpnI GATC 5 cut(s) 35, 446, 498, 660, 1011
DpnII GATC 5 cut(s) 33, 444, 496, 658, 1009
EaeI YGGCCR 3 cut(s) 59, 525, 799
Eam1104I CTCTTC 2 cut(s) 12, 1059
EarI CTCTTC 2 cut(s) 12, 1059
Eco130I CCWWGG 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 918
EcoO109I RGGNCCY 1 cut(s) 936
EcoRI GAATTC 1 cut(s) 765
EcoRII CCWGG 2 cut(s) 465, 932
EcoT14I CCWWGG 1 cut(s) 27
EgeI GGCGCC 1 cut(s) 98
EheI GGCGCC 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 27
FauI CCCGC 1 cut(s) 145
FblI GTMKAC 1 cut(s) 984
Fnu4HI GCNGC 2 cut(s) 323, 1079
FokI GGATG 4 cut(s) 380, 589, 934, 1119
FseI GGCCGGCC 1 cut(s) 199
Fsp4HI GCNGC 2 cut(s) 323, 1079
FspBI CTAG 2 cut(s) 494, 747
GlaI GCGC 1 cut(s) 98
GluI GCNGC 2 cut(s) 323, 1079
GsuI CTGGAG 1 cut(s) 630
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 8 cut(s) 26, 61, 195, 199, 465, 527, 801, 937
HapII CCGG 8 cut(s) 50, 196, 263, 365, 401, 951, 1104, 1130
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 97
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 5 cut(s) 46, 55, 484, 513, 750
HpaII CCGG 8 cut(s) 50, 196, 263, 365, 401, 951, 1104, 1130
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 8 cut(s) 169, 177, 310, 386, 744, 788, 985, 1020
Hpy188I TCNGA 4 cut(s) 107, 846, 945, 1032
Hpy8I GTNNAC 8 cut(s) 169, 177, 310, 386, 744, 788, 985, 1020
Hpy99I CGWCG 3 cut(s) 92, 289, 666
HpyAV CCTTC 4 cut(s) 16, 228, 563, 893
HpyCH4III ACNGT 5 cut(s) 147, 436, 591, 773, 1085
HpyCH4IV ACGT 3 cut(s) 284, 648, 817
HpyCH4V TGCA 7 cut(s) 221, 392, 406, 599, 829, 1081, 1100
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 322, 605
HpyF3I CTNAG 4 cut(s) 456, 508, 621, 752
HpySE526I ACGT 3 cut(s) 284, 648, 817
Hsp92I GRCGYC 1 cut(s) 97
HspAI GCGC 1 cut(s) 97
KasI GGCGCC 1 cut(s) 96
Kpn2I TCCGGA 2 cut(s) 49, 1129
KroI GCCGGC 1 cut(s) 195
KroNI GCCGGC 1 cut(s) 197
Kzo9I GATC 5 cut(s) 33, 444, 496, 658, 1009
LmnI GCTCC 2 cut(s) 628, 675
Lsp1109I GCAGC 1 cut(s) 1065
LweI GCATC 3 cut(s) 401, 631, 1148
MaeI CTAG 2 cut(s) 494, 747
MaeII ACGT 3 cut(s) 284, 648, 817
MaeIII GTNAC 3 cut(s) 338, 793, 1144
MalI GATC 5 cut(s) 35, 446, 498, 660, 1011
MboI GATC 5 cut(s) 33, 444, 496, 658, 1009
MboII GAAGA 9 cut(s) 16, 29, 151, 169, 371, 528, 736, 1007, 1076
MflI RGATCY 1 cut(s) 444
MhlI GDGCHC 1 cut(s) 680
MlsI TGGCCA 1 cut(s) 527
MluCI AATT 6 cut(s) 614, 765, 928, 964, 1024, 1033
MluNI TGGCCA 1 cut(s) 527
Mly113I GGCGCC 1 cut(s) 97
MlyI GAGTC 3 cut(s) 40, 507, 744
MnlI CCTC 7 cut(s) 87, 241, 445, 483, 566, 679, 1060
Mox20I TGGCCA 1 cut(s) 527
MroI TCCGGA 2 cut(s) 49, 1129
MroNI GCCGGC 1 cut(s) 195
MscI TGGCCA 1 cut(s) 527
MseI TTAA 2 cut(s) 279, 882
MslI CAYNNNNRTG 4 cut(s) 315, 411, 882, 1105
Msp20I TGGCCA 1 cut(s) 527
MspA1I CMGCKG 1 cut(s) 923
MspI CCGG 8 cut(s) 50, 196, 263, 365, 401, 951, 1104, 1130
MspR9I CCNGG 4 cut(s) 467, 934, 952, 1104
Mva1269I GAATGC 2 cut(s) 406, 1124
MvaI CCWGG 2 cut(s) 467, 934
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 3 cut(s) 67, 322, 605
NaeI GCCGGC 1 cut(s) 197
NarI GGCGCC 1 cut(s) 97
NciI CCSGG 2 cut(s) 952, 1104
NcoI CCATGG 1 cut(s) 27
NdeII GATC 5 cut(s) 33, 444, 496, 658, 1009
NgoMIV GCCGGC 1 cut(s) 195
NlaIV GGNNCC 5 cut(s) 98, 261, 446, 471, 1041
NmuCI GTSAC 2 cut(s) 338, 793
NruI TCGCGA 1 cut(s) 87
NspI RCATGY 4 cut(s) 836, 862, 881, 983
PagI TCATGA 2 cut(s) 655, 1060
PciI ACATGT 3 cut(s) 832, 877, 979
PctI GAATGC 2 cut(s) 406, 1124
PdiI GCCGGC 1 cut(s) 197
PfeI GAWTC 2 cut(s) 55, 484
PflMI CCANNNNNTGG 1 cut(s) 797
PkrI GCNGC 2 cut(s) 324, 1080
PleI GAGTC 3 cut(s) 40, 507, 744
PluTI GGCGCC 1 cut(s) 100
PpsI GAGTC 3 cut(s) 40, 507, 744
Ppu21I YACGTR 1 cut(s) 818
PscI ACATGT 3 cut(s) 832, 877, 979
Psp1406I AACGTT 1 cut(s) 648
Psp6I CCWGG 2 cut(s) 465, 932
PspGI CCWGG 2 cut(s) 465, 932
PspN4I GGNNCC 5 cut(s) 98, 261, 446, 471, 1041
PspPI GGNCC 2 cut(s) 580, 936
PstNI CAGNNNCTG 1 cut(s) 797
PsuI RGATCY 1 cut(s) 444
RigI GGCCGGCC 1 cut(s) 199
RruI TCGCGA 1 cut(s) 87
RsaI GTAC 4 cut(s) 593, 736, 757, 1021
RsaNI GTAC 4 cut(s) 592, 735, 756, 1020
RseI CAYNNNNRTG 4 cut(s) 315, 411, 882, 1105
SaqAI TTAA 2 cut(s) 279, 882
SatI GCNGC 2 cut(s) 323, 1079
Sau3AI GATC 5 cut(s) 33, 444, 496, 658, 1009
Sau96I GGNCC 2 cut(s) 580, 936
SchI GAGTC 3 cut(s) 40, 507, 744
ScrFI CCNGG 4 cut(s) 467, 934, 952, 1104
SduI GDGCHC 1 cut(s) 680
SetI ASST 8 cut(s) 246, 287, 391, 475, 651, 690, 820, 1151
SfaNI GCATC 3 cut(s) 401, 631, 1148
SfoI GGCGCC 1 cut(s) 98
SinI GGWCC 1 cut(s) 580
SmiMI CAYNNNNRTG 4 cut(s) 315, 411, 882, 1105
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 6 cut(s) 614, 765, 928, 964, 1024, 1033
SsiI CCGC 3 cut(s) 152, 323, 921
SspDI GGCGCC 1 cut(s) 96
SspMI CTAG 2 cut(s) 494, 747
StyD4I CCNGG 4 cut(s) 465, 932, 950, 1102
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 5 cut(s) 147, 436, 591, 773, 1085
TaiI ACGT 3 cut(s) 287, 651, 820
TaqI TCGA 4 cut(s) 120, 490, 664, 1090
TasI AATT 6 cut(s) 614, 765, 928, 964, 1024, 1033
TatI WGTACW 3 cut(s) 591, 734, 1019
TauI GCSGC 1 cut(s) 325
TfiI GAWTC 2 cut(s) 55, 484
Tru1I TTAA 2 cut(s) 279, 882
Tru9I TTAA 2 cut(s) 279, 882
TscAI CASTG 5 cut(s) 228, 333, 802, 979, 1088
TseFI GTSAC 2 cut(s) 338, 793
TseI GCWGC 1 cut(s) 1078
Tsp45I GTSAC 2 cut(s) 338, 793
TspDTI ATGAA 9 cut(s) 17, 115, 399, 476, 644, 1008, 1049, 1077, 1131
TspRI CASTG 5 cut(s) 228, 333, 802, 979, 1088
Van91I CCANNNNNTGG 1 cut(s) 797
VpaK11BI GGWCC 1 cut(s) 580
XapI RAATTY 5 cut(s) 614, 765, 928, 964, 1033
XceI RCATGY 4 cut(s) 836, 862, 881, 983
XmiI GTMKAC 1 cut(s) 984
XspI CTAG 2 cut(s) 494, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.