Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006447

Physical Location & Seq

Genomic Coordinates Reverse (-)

14188188 .. 14190502

Gene Structure 2315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G161300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGCGAGGCCCTCCTTAGGCCCCTCACCTCTCTCTCTCCTCAGCTTCCTCCTCTTCTGTCTCCTCACCCCAACCCTCATTGCCTCCAGACCACTGCAGCAAAACCCTGAATTGGTTGTACAAGATGTACAAAGGAGCATCAATGACTCTGTTTCTAGGAGGAACTTGGGCTACTTGTCATGCGGGACTGGAAACCCCATTGATGATTGCTGGCGATGTGACCCAAATTGGGAGCAGAACAGGCAGAGGCTGGCAGATTGCGCAATTGGGTTTGGGAAAAATGCCATTGGTGGAAGAGATGGCAAGATTTACGTGGTCACGGATTCAGGGGATAACGACCCTGTAAACCCAAAGCCAGGGACTCTACGACATGCCGTTATTCAGGACGAGCCACTGTGGATCATCTTCCAGCGTGATATGACAATCCAACTGAAGGAAGAGCTGATCATGAACTCTTTCAAGACCATCGACGGTCGAGGAGCCAGCGTGCACATTGCTGGTGGGCCATGCATCACCGTCCAATTTGTGACCAACATTATCATTCATGGTCTGCACATACACGATTGCAAGCCGGGAGGGAATGCTATGGTGCGGTCCTCCCCAGAGCACTACGGGTGGAGGACTATATCCGACGGTGACGGTGTGTCCATCTTCGGTGGGAGCCACGTGTGGGTGGACCATTGCTCTTTGTCAAATTGCAAAGATGGGTTGGTTGATGCAATTCATGGGTCCACTGCCATAACAATTTCGAACAATTACATGACTCACCATGACAAAGTGATGTTGCTTGGGCATAGCGATTCTTATACCGAAGATAAGAACATGCAAGTCACCATAGCCTTCAATCACTTTGGAGAAGGTTTGGTCCAGAGAATGCCAAGATGTAGGCATGGATATTTCCATGTGGTGAACAATGACTACACCCATTGGGAGATGTATGCCATTGGAGGCAGTGCCAACCCTACAATCAATAGCCAAGGGAATAGATTTGCTGCACCAGATATCAGATTTAGCAAAGAGGTGACAAAACATGAGGATGCACCAGAAAGTGAATGGAGGAATTGGAATTGGAGGTCTGAAGGAGACTTGATGATAAATGGTGCATTTTTTACAGCATCAGGAGCTGGAGCTTCCTCAAGCTATGCAAGGGCTTCAAGCTTGGGGGCAAAGCCATCTTCTCTAGTGGGTTCAATAACCACAGCTTCTGGTGCACTTAGCTGCAGAAAGGGTTCTCGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C

Protein Analysis

414

Amino Acids

45.25

Weight (kDa)

6.62

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24780 AT4G24780 AT5G63180
fragaria_vesca	FvH4_5g06720 FvH4_5g06720 FvH4_5g06720 FvH4_5g06720 FvH4_5g06720
malus_domestica	MD06G1161400.v1.1 MD14G1167100.v1.1
prunus_persica	Prupe.5G161300_v2.0.a1 Prupe.5G161300_v2.0.a1 Prupe.5G161300_v2.0.a1 Prupe.5G161300_v2.0.a1 Prupe.5G161300_v2.0.a1
pyrus_communis	pycom06g14420
rosa_chinensis	RchiOBHm_Chr7g0191921
rosa_laevigata	RLG00000004418
rosa_multiflora	Rmu_ssc0000421.1_g000014
rosa_roxburghii	Rroxscaffold_3G00263470
rosa_rugosa	Rorug06G0511700
rosa_samantha	Rh7AG121900 Rh7BG123500 Rh7CG126100 Rh7DG125100
rosa_wichuraiana	Rw7G010380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	262
AciI	CCGC	2 cut(s)	183, 592
AclWI	GGATC	1 cut(s)	407
AcuI	CTGAAG	2 cut(s)	452, 1098
AcvI	CACGTG	1 cut(s)	667
AfaI	GTAC	2 cut(s)	120, 129
AfiI	CCNNNNNNNGG	6 cut(s)	17, 112, 229, 356, 433, 670
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	4 cut(s)	460, 844, 1155, 1191
AhdI	GACNNNNNGTC	1 cut(s)	643
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	8 cut(s)	45, 442, 1124, 1130, 1140, 1158, 1202, 1218
AluI	AGCT	8 cut(s)	45, 442, 1124, 1130, 1140, 1158, 1202, 1218
Alw21I	GWGCWC	3 cut(s)	492, 609, 1213
Alw26I	GTCTC	2 cut(s)	65, 1077
Alw44I	GTGCAC	2 cut(s)	488, 1209
AlwI	GGATC	1 cut(s)	407
AlwNI	CAGNNNCTG	3 cut(s)	250, 1124, 1205
AoxI	GGCC	3 cut(s)	8, 19, 503
ApaLI	GTGCAC	2 cut(s)	488, 1209
ApeKI	GCWGC	3 cut(s)	97, 992, 1218
Asp700I	GAANNNNTTC	2 cut(s)	455, 1228
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	7 cut(s)	9, 20, 503, 594, 676, 729, 865
AsuC2I	CCSGG	1 cut(s)	573
AsuHPI	GGTGA	8 cut(s)	18, 58, 505, 647, 758, 823, 919, 1033
AsuII	TTCGAA	1 cut(s)	749
AvaII	GGWCC	4 cut(s)	594, 676, 729, 865
AxyI	CCTNAGG	1 cut(s)	16
BaeGI	GKGCMC	2 cut(s)	492, 1213
BbrPI	CACGTG	1 cut(s)	667
Bbv12I	GWGCWC	3 cut(s)	492, 609, 1213
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	109, 979, 1205
BccI	CCATC	5 cut(s)	293, 473, 656, 698, 1180
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	357
BclI	TGATCA	1 cut(s)	444
BcnI	CCSGG	1 cut(s)	573
BcoDI	GTCTC	2 cut(s)	65, 1077
BfaI	CTAG	2 cut(s)	156, 1181
BfmI	CTRYAG	2 cut(s)	95, 1219
BisI	GCNGC	3 cut(s)	98, 993, 1219
BlsI	GCNGC	3 cut(s)	99, 994, 1220
Bme1390I	CCNGG	2 cut(s)	357, 573
Bme18I	GGWCC	4 cut(s)	594, 676, 729, 865
BmeRI	GACNNNNNGTC	1 cut(s)	643
BmgT120I	GGNCC	7 cut(s)	9, 20, 503, 594, 676, 729, 865
BmiI	GGNNCC	4 cut(s)	22, 481, 662, 730
BmrFI	CCNGG	2 cut(s)	357, 573
BmsI	GCATC	5 cut(s)	147, 519, 706, 1027, 1124
BpmI	CTGGAG	2 cut(s)	70, 1146
Bpu10I	CCTNAGC	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	749
BpuEI	CTTGAG	1 cut(s)	1120
BpuMI	CCSGG	1 cut(s)	573
BsaAI	YACGTR	2 cut(s)	313, 667
BsaJI	CCNNGG	2 cut(s)	356, 976
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	6 cut(s)	17, 112, 229, 356, 433, 670
Bse1I	ACTGG	1 cut(s)	193
Bse21I	CCTNAGG	1 cut(s)	16
Bse3DI	GCAATG	3 cut(s)	78, 492, 679
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	356, 976
BseGI	GGATG	1 cut(s)	1042
BseLI	CCNNNNNNNGG	6 cut(s)	17, 112, 229, 356, 433, 670
BseMI	GCAATG	3 cut(s)	78, 492, 679
BseMII	CTCAG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	4 cut(s)	29, 41, 53, 492
BseSI	GKGCMC	2 cut(s)	492, 1213
BseXI	GCAGC	3 cut(s)	109, 979, 1205
BsgI	GTGCAG	2 cut(s)	536, 978
Bsh1285I	CGRYCG	1 cut(s)	475
BshFI	GGCC	3 cut(s)	10, 21, 505
BsiEI	CGRYCG	1 cut(s)	475
BsiHKAI	GWGCWC	3 cut(s)	492, 609, 1213
BsiSI	CCGG	1 cut(s)	572
BslFI	GGGAC	2 cut(s)	199, 373
BslI	CCNNNNNNNGG	6 cut(s)	17, 112, 229, 356, 433, 670
BsmAI	GTCTC	2 cut(s)	65, 1077
BsmFI	GGGAC	2 cut(s)	199, 373
BsmI	GAATGC	2 cut(s)	586, 879
BsnI	GGCC	3 cut(s)	10, 21, 505
Bsp119I	TTCGAA	1 cut(s)	749
Bsp1286I	GDGCHC	3 cut(s)	492, 609, 1213
Bsp1407I	TGTACA	2 cut(s)	118, 127
Bsp143I	GATC	2 cut(s)	399, 444
BspACI	CCGC	2 cut(s)	183, 592
BspANI	GGCC	3 cut(s)	10, 21, 505
BspCNI	CTCAG	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	447
BspLI	GGNNCC	4 cut(s)	22, 481, 662, 730
BspMAI	CTGCAG	2 cut(s)	99, 1223
BspPI	GGATC	1 cut(s)	407
BspQI	GCTCTTC	1 cut(s)	432
BspT104I	TTCGAA	1 cut(s)	749
BsrDI	GCAATG	3 cut(s)	78, 492, 679
BsrGI	TGTACA	2 cut(s)	118, 127
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	356, 976
BssMI	GATC	2 cut(s)	399, 444
BssT1I	CCWWGG	1 cut(s)	976
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	5 cut(s)	396, 473, 517, 635, 641
Bst6I	CTCTTC	3 cut(s)	59, 289, 432
BstAUI	TGTACA	2 cut(s)	118, 127
BstBAI	YACGTR	2 cut(s)	313, 667
BstBI	TTCGAA	1 cut(s)	749
BstC8I	GCNNGC	5 cut(s)	212, 252, 484, 488, 569
BstDEI	CTNAG	3 cut(s)	16, 41, 1214
BstF5I	GGATG	1 cut(s)	1042
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	2 cut(s)	402, 447
BstMAI	GTCTC	2 cut(s)	65, 1077
BstMBI	GATC	2 cut(s)	399, 444
BstMCI	CGRYCG	1 cut(s)	475
BstMWI	GCNNNNNNNGC	4 cut(s)	241, 260, 1121, 1208
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	2 cut(s)	374, 826
BstSCI	CCNGG	2 cut(s)	355, 571
BstSFI	CTRYAG	2 cut(s)	95, 1219
BstSLI	GKGCMC	2 cut(s)	492, 1213
BstV1I	GCAGC	3 cut(s)	109, 979, 1205
Bsu36I	CCTNAGG	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	10, 21, 505
BtgZI	GCGATG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	1042
BtsI	GCAGTG	3 cut(s)	92, 732, 958
BtsIMutI	CAGTG	4 cut(s)	92, 392, 732, 958
Cac8I	GCNNGC	5 cut(s)	212, 252, 484, 488, 569
CaiI	CAGNNNCTG	3 cut(s)	250, 1124, 1205
CciI	TCATGA	1 cut(s)	447
CfoI	GCGC	1 cut(s)	263
Cfr13I	GGNCC	7 cut(s)	9, 20, 503, 594, 676, 729, 865
Csp6I	GTAC	2 cut(s)	119, 128
CviQI	GTAC	2 cut(s)	119, 128
DdeI	CTNAG	3 cut(s)	16, 41, 1214
DpnI	GATC	2 cut(s)	401, 446
DpnII	GATC	2 cut(s)	399, 444
DriI	GACNNNNNGTC	1 cut(s)	643
Eam1104I	CTCTTC	3 cut(s)	59, 289, 432
Eam1105I	GACNNNNNGTC	1 cut(s)	643
EarI	CTCTTC	3 cut(s)	59, 289, 432
Eco130I	CCWWGG	1 cut(s)	976
Eco32I	GATATC	1 cut(s)	1003
Eco47I	GGWCC	4 cut(s)	594, 676, 729, 865
Eco57I	CTGAAG	2 cut(s)	452, 1098
Eco72I	CACGTG	1 cut(s)	667
Eco81I	CCTNAGG	1 cut(s)	16
EcoO109I	RGGNCCY	2 cut(s)	9, 20
EcoRII	CCWGG	1 cut(s)	355
EcoRV	GATATC	1 cut(s)	1003
EcoT14I	CCWWGG	1 cut(s)	976
EcoT22I	ATGCAT	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	976
FaqI	GGGAC	2 cut(s)	199, 373
FauI	CCCGC	1 cut(s)	176
FbaI	TGATCA	1 cut(s)	444
Fnu4HI	GCNGC	3 cut(s)	98, 993, 1219
FokI	GGATG	1 cut(s)	1049
Fsp4HI	GCNGC	3 cut(s)	98, 993, 1219
FspBI	CTAG	2 cut(s)	156, 1181
FspI	TGCGCA	1 cut(s)	262
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	3 cut(s)	98, 993, 1219
GsuI	CTGGAG	2 cut(s)	70, 1146
HaeIII	GGCC	3 cut(s)	10, 21, 505
HapII	CCGG	1 cut(s)	572
HhaI	GCGC	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HindIII	AAGCTT	1 cut(s)	1156
HinfI	GANTC	5 cut(s)	146, 323, 361, 763, 800
HpaII	CCGG	1 cut(s)	572
HphI	GGTGA	8 cut(s)	18, 58, 505, 647, 758, 823, 919, 1033
Hpy166II	GTNNAC	6 cut(s)	346, 490, 676, 732, 910, 1211
Hpy188I	TCNGA	3 cut(s)	631, 1007, 1078
Hpy188III	TCNNGA	6 cut(s)	87, 383, 448, 460, 868, 1119
Hpy8I	GTNNAC	6 cut(s)	346, 490, 676, 732, 910, 1211
Hpy99I	CGWCG	2 cut(s)	473, 635
HpyAV	CCTTC	4 cut(s)	427, 850, 851, 1073
HpyCH4III	ACNGT	5 cut(s)	396, 473, 517, 635, 641
HpyCH4IV	ACGT	2 cut(s)	312, 666
HpyF10VI	GCNNNNNNNGC	4 cut(s)	241, 260, 1121, 1208
HpyF3I	CTNAG	3 cut(s)	16, 41, 1214
HpySE526I	ACGT	2 cut(s)	312, 666
HspAI	GCGC	1 cut(s)	261
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	2 cut(s)	399, 444
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	6 cut(s)	135, 232, 479, 660, 1121, 1127
Lsp1109I	GCAGC	3 cut(s)	109, 979, 1205
LweI	GCATC	5 cut(s)	147, 519, 706, 1027, 1124
MaeI	CTAG	2 cut(s)	156, 1181
MaeII	ACGT	2 cut(s)	312, 666
MaeIII	GTNAC	6 cut(s)	218, 316, 526, 635, 829, 1021
MalI	GATC	2 cut(s)	401, 446
MboI	GATC	2 cut(s)	399, 444
MboII	GAAGA	7 cut(s)	46, 306, 397, 449, 643, 824, 1167
MfeI	CAATTG	1 cut(s)	264
MhlI	GDGCHC	3 cut(s)	492, 609, 1213
MlyI	GAGTC	3 cut(s)	140, 355, 757
MmeI	TCCRAC	2 cut(s)	451, 654
Mph1103I	ATGCAT	1 cut(s)	512
MroXI	GAANNNNTTC	2 cut(s)	455, 1228
MslI	CAYNNNNRTG	1 cut(s)	1035
MspI	CCGG	1 cut(s)	572
MspR9I	CCNGG	2 cut(s)	357, 573
MunI	CAATTG	1 cut(s)	264
Mva1269I	GAATGC	2 cut(s)	586, 879
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	4 cut(s)	241, 260, 1121, 1208
NciI	CCSGG	1 cut(s)	573
NdeII	GATC	2 cut(s)	399, 444
NlaIV	GGNNCC	4 cut(s)	22, 481, 662, 730
NmuCI	GTSAC	6 cut(s)	218, 316, 526, 635, 829, 1021
NsbI	TGCGCA	1 cut(s)	262
NsiI	ATGCAT	1 cut(s)	512
NspI	RCATGY	2 cut(s)	374, 826
NspV	TTCGAA	1 cut(s)	749
PagI	TCATGA	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	432
PctI	GAATGC	2 cut(s)	586, 879
PdmI	GAANNNNTTC	2 cut(s)	455, 1228
PfeI	GAWTC	2 cut(s)	323, 800
PkrI	GCNGC	3 cut(s)	99, 994, 1220
PleI	GAGTC	3 cut(s)	140, 355, 757
PmaCI	CACGTG	1 cut(s)	667
PmlI	CACGTG	1 cut(s)	667
PpsI	GAGTC	3 cut(s)	140, 355, 757
Ppu21I	YACGTR	2 cut(s)	313, 667
Psp6I	CCWGG	1 cut(s)	355
PspCI	CACGTG	1 cut(s)	667
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	4 cut(s)	22, 481, 662, 730
PspPI	GGNCC	7 cut(s)	9, 20, 503, 594, 676, 729, 865
PsrI	GAACNNNNNNTAC	4 cut(s)	155, 187, 902, 934
PstI	CTGCAG	2 cut(s)	99, 1223
PstNI	CAGNNNCTG	3 cut(s)	250, 1124, 1205
RsaI	GTAC	2 cut(s)	120, 129
RsaNI	GTAC	2 cut(s)	119, 128
RseI	CAYNNNNRTG	1 cut(s)	1035
SapI	GCTCTTC	1 cut(s)	432
SatI	GCNGC	3 cut(s)	98, 993, 1219
Sau3AI	GATC	2 cut(s)	399, 444
Sau96I	GGNCC	7 cut(s)	9, 20, 503, 594, 676, 729, 865
SchI	GAGTC	3 cut(s)	140, 355, 757
ScrFI	CCNGG	2 cut(s)	357, 573
SduI	GDGCHC	3 cut(s)	492, 609, 1213
SfaNI	GCATC	5 cut(s)	147, 519, 706, 1027, 1124
SfcI	CTRYAG	2 cut(s)	95, 1219
SfuI	TTCGAA	1 cut(s)	749
SinI	GGWCC	4 cut(s)	594, 676, 729, 865
SmiMI	CAYNNNNRTG	1 cut(s)	1035
SmlI	CTYRAG	1 cut(s)	1135
SmoI	CTYRAG	1 cut(s)	1135
SsiI	CCGC	2 cut(s)	183, 592
SspMI	CTAG	2 cut(s)	156, 1181
StyD4I	CCNGG	2 cut(s)	355, 571
StyI	CCWWGG	1 cut(s)	976
TaaI	ACNGT	5 cut(s)	396, 473, 517, 635, 641
TaiI	ACGT	2 cut(s)	315, 669
TaqI	TCGA	3 cut(s)	468, 475, 749
TatI	WGTACW	2 cut(s)	118, 127
TfiI	GAWTC	2 cut(s)	323, 800
TscAI	CASTG	4 cut(s)	99, 399, 739, 958
TseFI	GTSAC	6 cut(s)	218, 316, 526, 635, 829, 1021
TseI	GCWGC	3 cut(s)	97, 992, 1218
Tsp45I	GTSAC	6 cut(s)	218, 316, 526, 635, 829, 1021
TspDTI	ATGAA	3 cut(s)	464, 533, 713
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	4 cut(s)	99, 399, 739, 958
VneI	GTGCAC	2 cut(s)	488, 1209
VpaK11BI	GGWCC	4 cut(s)	594, 676, 729, 865
XceI	RCATGY	2 cut(s)	374, 826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1050
XmnI	GAANNNNTTC	2 cut(s)	455, 1228
XspI	CTAG	2 cut(s)	156, 1181
Zsp2I	ATGCAT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.