Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000421.1

Orthogroup ID

OG0006447

Physical Location & Seq

Genomic Coordinates Reverse (-)

63838 .. 65638

Gene Structure 1801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000421.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

atgccttcaggcccctctctctctctcctcatcttcctcttctctctcctcaccctaaccctcattgtttcctctgcaccagttcaagatcctgaactcgttgtacagcaagtacaaaggagcatctataatgcctcagtcacccggaggaagttgggctatttgtcatgtgggtccggaaacccgatcgacgactgctggcggtgcgaccctaattgggagaagaaccgccagaggctcgccgactgcgcaattgggttcggcaaaaacgccattggcggcagggacgggaggatttacgtggtgactgactcaggggacgacgaccccgtgaaccccaagccagggactctacgacatgccgtcatccaggacgagcccttgtggatcattttcgagcgcgacatgtcgatcaagctcaaggaggagctgatcatgaactcgttcaagaccctggacggccgaggagccagcgtgcacatctccggcgggccatgcattacgatccagtacgtgaccaacattatcattcatggactcaacatacacgattgcaagccgggagggaatgctatggtgcgtgactccccaaatcacttcgggtggagaaccatatcggacggtgatggtgtgtccatcttcggtgggagccatgtttgggtggaccattgctccctgtcgaactgcgccgacgggctggtcgacgcaattcatgggtccactgcgataacgatttcgaacaattacatgacgcaccatgataaggtcatgttgctgggacacagtgatacctatacccaggacaagaacatgcaggtcactattgccttcaaccactttggagaaggtcttgttcaaaggatgccaagatgcaggcatggatatttccatgtggtgaacaatgactacacccattgggagatgtacgccattggaggcagtgcaaaccctactatcaatagccaggggaataggtttactgcaccagatataaggttcagcaaagaggtgacaaaacatgaggatgcacctgaaagtgagtggaaaaattggaactggaggtcagagggtgacatgttgataaacggtgcatttttcacggcctctggtgccggagcttcttcaagctatgcaaaagcctcaagcttgggggcaaggccatcttctcttgtggcttcaatcaccacaacttctggtgcactcaattgccgaaagggttctcgttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C

Protein Analysis

409

Amino Acids

44.82

Weight (kDa)

6.59

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24780 AT4G24780 AT5G63180
fragaria_vesca	FvH4_5g06720 FvH4_5g06720 FvH4_5g06720 FvH4_5g06720 FvH4_5g06720
malus_domestica	MD06G1161400.v1.1 MD14G1167100.v1.1
prunus_persica	Prupe.5G161300_v2.0.a1 Prupe.5G161300_v2.0.a1 Prupe.5G161300_v2.0.a1 Prupe.5G161300_v2.0.a1 Prupe.5G161300_v2.0.a1
pyrus_communis	pycom06g14420
rosa_chinensis	RchiOBHm_Chr7g0191921
rosa_laevigata	RLG00000004418
rosa_multiflora	Rmu_ssc0000421.1_g000014
rosa_roxburghii	Rroxscaffold_3G00263470
rosa_rugosa	Rorug06G0511700
rosa_samantha	Rh7AG121900 Rh7BG123500 Rh7CG126100 Rh7DG125100
rosa_wichuraiana	Rw7G010380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	698
Acc16I	TGCGCA	1 cut(s)	250
Acc36I	ACCTGC	1 cut(s)	805
AccB1I	GGYRCC	1 cut(s)	1109
AccI	GTMKAC	1 cut(s)	702
AccII	CGCG	1 cut(s)	402
AccIII	TCCGGA	1 cut(s)	176
AciI	CCGC	4 cut(s)	202, 229, 279, 489
AclWI	GGATC	3 cut(s)	83, 395, 499
AcoI	YGGCCR	1 cut(s)	460
AfaI	GTAC	4 cut(s)	105, 114, 512, 926
AfiI	CCNNNNNNNGG	5 cut(s)	217, 344, 345, 658, 763
AflIII	ACRYGT	2 cut(s)	405, 1074
AgsI	TTSAA	6 cut(s)	86, 448, 832, 857, 1125, 1179
AhdI	GACNNNNNGTC	1 cut(s)	362
AjnI	CCWGG	5 cut(s)	343, 369, 453, 798, 963
AluBI	AGCT	5 cut(s)	418, 430, 1118, 1128, 1146
AluI	AGCT	5 cut(s)	418, 430, 1118, 1128, 1146
Alw21I	GWGCWC	2 cut(s)	480, 1201
Alw44I	GTGCAC	2 cut(s)	476, 1197
AlwI	GGATC	3 cut(s)	83, 395, 499
Aor13HI	TCCGGA	1 cut(s)	176
AoxI	GGCC	5 cut(s)	10, 460, 491, 1101, 1157
ApaLI	GTGCAC	2 cut(s)	476, 1197
Asp700I	GAANNNNTTC	2 cut(s)	443, 1216
AspLEI	GCGC	3 cut(s)	251, 402, 689
AspS9I	GGNCC	5 cut(s)	11, 174, 491, 664, 717
AsuC2I	CCSGG	2 cut(s)	145, 561
AsuHPI	GGTGA	8 cut(s)	43, 133, 316, 635, 907, 1021, 1082, 1174
AsuII	TTCGAA	1 cut(s)	737
AvaII	GGWCC	3 cut(s)	174, 664, 717
BaeGI	GKGCMC	2 cut(s)	480, 1201
BanI	GGYRCC	1 cut(s)	1109
BanII	GRGCYC	1 cut(s)	381
Bbv12I	GWGCWC	2 cut(s)	480, 1201
BccI	CCATC	3 cut(s)	620, 644, 1168
BceAI	ACGGC	3 cut(s)	347, 475, 1116
BciT130I	CCWGG	5 cut(s)	345, 371, 455, 800, 965
BclI	TGATCA	1 cut(s)	432
BcnI	CCSGG	2 cut(s)	145, 561
BfuAI	ACCTGC	1 cut(s)	805
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
Bme1390I	CCNGG	7 cut(s)	145, 345, 371, 455, 561, 800, 965
Bme18I	GGWCC	3 cut(s)	174, 664, 717
BmeRI	GACNNNNNGTC	1 cut(s)	362
BmgT120I	GGNCC	5 cut(s)	11, 174, 491, 664, 717
BmiI	GGNNCC	6 cut(s)	13, 175, 469, 650, 718, 1111
BmrFI	CCNGG	7 cut(s)	145, 345, 371, 455, 561, 800, 965
BmsI	GCATC	4 cut(s)	132, 852, 860, 1015
BpmI	CTGGAG	1 cut(s)	1078
Bpu14I	TTCGAA	1 cut(s)	737
BpuEI	CTTGAG	2 cut(s)	404, 1126
BpuMI	CCSGG	2 cut(s)	145, 561
BsaAI	YACGTR	2 cut(s)	301, 514
BsaJI	CCNNGG	5 cut(s)	344, 453, 463, 798, 964
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	4 cut(s)	459, 489, 656, 686
Bsc4I	CCNNNNNNNGG	5 cut(s)	217, 344, 345, 658, 763
Bse1I	ACTGG	3 cut(s)	80, 508, 1061
Bse3DI	GCAATG	1 cut(s)	667
BseAI	TCCGGA	1 cut(s)	176
BseBI	CCWGG	5 cut(s)	345, 371, 455, 800, 965
BseDI	CCNNGG	5 cut(s)	344, 453, 463, 798, 964
BseGI	GGATG	3 cut(s)	366, 867, 1030
BseLI	CCNNNNNNNGG	5 cut(s)	217, 344, 345, 658, 763
BseMI	GCAATG	1 cut(s)	667
BseMII	CTCAG	2 cut(s)	150, 327
BseNI	ACTGG	3 cut(s)	80, 508, 1061
BseRI	GAGGAG	4 cut(s)	17, 38, 440, 480
BseSI	GKGCMC	2 cut(s)	480, 1201
BseX3I	CGGCCG	1 cut(s)	460
BseYI	CCCAGC	1 cut(s)	775
BsgI	GTGCAG	2 cut(s)	60, 966
Bsh1236I	CGCG	1 cut(s)	402
Bsh1285I	CGRYCG	2 cut(s)	189, 463
BshFI	GGCC	5 cut(s)	12, 462, 493, 1103, 1159
BshNI	GGYRCC	1 cut(s)	1109
BsiEI	CGRYCG	2 cut(s)	189, 463
BsiHKAI	GWGCWC	2 cut(s)	480, 1201
BsiSI	CCGG	5 cut(s)	145, 177, 486, 560, 1113
BslFI	GGGAC	4 cut(s)	299, 332, 361, 792
BslI	CCNNNNNNNGG	5 cut(s)	217, 344, 345, 658, 763
BsmFI	GGGAC	4 cut(s)	299, 332, 361, 792
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	5 cut(s)	12, 462, 493, 1103, 1159
Bsp119I	TTCGAA	1 cut(s)	737
Bsp1286I	GDGCHC	3 cut(s)	381, 480, 1201
Bsp13I	TCCGGA	1 cut(s)	176
Bsp1407I	TGTACA	1 cut(s)	103
Bsp143I	GATC	6 cut(s)	88, 186, 387, 411, 432, 504
BspACI	CCGC	4 cut(s)	202, 229, 279, 489
BspANI	GGCC	5 cut(s)	12, 462, 493, 1103, 1159
BspCNI	CTCAG	2 cut(s)	149, 326
BspEI	TCCGGA	1 cut(s)	176
BspFNI	CGCG	1 cut(s)	402
BspHI	TCATGA	1 cut(s)	435
BspLI	GGNNCC	6 cut(s)	13, 175, 469, 650, 718, 1111
BspMI	ACCTGC	1 cut(s)	805
BspPI	GGATC	3 cut(s)	83, 395, 499
BspT104I	TTCGAA	1 cut(s)	737
BspT107I	GGYRCC	1 cut(s)	1109
BsrDI	GCAATG	1 cut(s)	667
BsrGI	TGTACA	1 cut(s)	103
BsrI	ACTGG	3 cut(s)	80, 508, 1061
BssECI	CCNNGG	5 cut(s)	344, 453, 463, 798, 964
BssMI	GATC	6 cut(s)	88, 186, 387, 411, 432, 504
Bst2UI	CCWGG	5 cut(s)	345, 371, 455, 800, 965
Bst4CI	ACNGT	3 cut(s)	623, 785, 1088
Bst6I	CTCTTC	1 cut(s)	44
BstAUI	TGTACA	1 cut(s)	103
BstBAI	YACGTR	2 cut(s)	301, 514
BstBI	TTCGAA	1 cut(s)	737
BstC8I	GCNNGC	7 cut(s)	200, 240, 472, 476, 491, 557, 875
BstDEI	CTNAG	2 cut(s)	136, 313
BstF5I	GGATG	3 cut(s)	366, 867, 1030
BstFNI	CGCG	1 cut(s)	402
BstHHI	GCGC	3 cut(s)	251, 402, 689
BstKTI	GATC	6 cut(s)	91, 189, 390, 414, 435, 507
BstMBI	GATC	6 cut(s)	88, 186, 387, 411, 432, 504
BstMCI	CGRYCG	2 cut(s)	189, 463
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 248, 495, 1109
BstNI	CCWGG	5 cut(s)	345, 371, 455, 800, 965
BstNSI	RCATGY	4 cut(s)	362, 409, 814, 1078
BstSCI	CCNGG	7 cut(s)	143, 343, 369, 453, 559, 798, 963
BstSLI	GKGCMC	2 cut(s)	480, 1201
BstUI	CGCG	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BstZI	CGGCCG	1 cut(s)	460
BsuRI	GGCC	5 cut(s)	12, 462, 493, 1103, 1159
BtsCI	GGATG	3 cut(s)	366, 867, 1030
BtsI	GCAGTG	2 cut(s)	720, 946
BtsIMutI	CAGTG	3 cut(s)	720, 790, 946
BveI	ACCTGC	1 cut(s)	805
Cac8I	GCNNGC	7 cut(s)	200, 240, 472, 476, 491, 557, 875
CciI	TCATGA	1 cut(s)	435
CfoI	GCGC	3 cut(s)	251, 402, 689
Cfr13I	GGNCC	5 cut(s)	11, 174, 491, 664, 717
CseI	GACGC	2 cut(s)	713, 760
Csp6I	GTAC	4 cut(s)	104, 113, 511, 925
CviQI	GTAC	4 cut(s)	104, 113, 511, 925
DdeI	CTNAG	2 cut(s)	136, 313
DpnI	GATC	6 cut(s)	90, 188, 389, 413, 434, 506
DpnII	GATC	6 cut(s)	88, 186, 387, 411, 432, 504
DrdI	GACNNNNNNGTC	1 cut(s)	698
DriI	GACNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	698
EaeI	YGGCCR	1 cut(s)	460
EagI	CGGCCG	1 cut(s)	460
Eam1104I	CTCTTC	1 cut(s)	44
Eam1105I	GACNNNNNGTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	44
EclXI	CGGCCG	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	381
Eco47I	GGWCC	3 cut(s)	174, 664, 717
Eco52I	CGGCCG	1 cut(s)	460
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRII	CCWGG	5 cut(s)	343, 369, 453, 798, 963
EcoT22I	ATGCAT	1 cut(s)	500
EcoT38I	GRGCYC	1 cut(s)	381
FalI	AAGNNNNNCTT	2 cut(s)	1147, 1179
FaqI	GGGAC	4 cut(s)	299, 332, 361, 792
FauI	CCCGC	1 cut(s)	482
FbaI	TGATCA	1 cut(s)	432
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	1 cut(s)	280
FokI	GGATG	3 cut(s)	353, 874, 1037
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	1 cut(s)	280
FspI	TGCGCA	1 cut(s)	250
GlaI	GCGC	3 cut(s)	250, 401, 688
GluI	GCNGC	1 cut(s)	280
GsaI	CCCAGC	1 cut(s)	779
GsuI	CTGGAG	1 cut(s)	1078
HaeIII	GGCC	5 cut(s)	12, 462, 493, 1103, 1159
HapII	CCGG	5 cut(s)	145, 177, 486, 560, 1113
HgaI	GACGC	2 cut(s)	713, 760
HhaI	GCGC	3 cut(s)	251, 402, 689
Hin6I	GCGC	3 cut(s)	249, 400, 687
HinP1I	GCGC	3 cut(s)	249, 400, 687
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	1144
HinfI	GANTC	4 cut(s)	311, 349, 537, 584
HpaII	CCGG	5 cut(s)	145, 177, 486, 560, 1113
HphI	GGTGA	8 cut(s)	43, 133, 316, 635, 907, 1021, 1082, 1174
Hpy166II	GTNNAC	8 cut(s)	334, 478, 664, 703, 720, 898, 978, 1199
Hpy188I	TCNGA	2 cut(s)	619, 1066
Hpy188III	TCNNGA	5 cut(s)	86, 92, 177, 436, 448
Hpy8I	GTNNAC	8 cut(s)	334, 478, 664, 703, 720, 898, 978, 1199
Hpy99I	CGWCG	4 cut(s)	194, 326, 695, 707
HpyAV	CCTTC	3 cut(s)	15, 838, 839
HpyCH4III	ACNGT	3 cut(s)	623, 785, 1088
HpyCH4IV	ACGT	2 cut(s)	300, 513
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 248, 495, 1109
HpyF3I	CTNAG	2 cut(s)	136, 313
HpySE526I	ACGT	2 cut(s)	300, 513
HspAI	GCGC	3 cut(s)	249, 400, 687
Kpn2I	TCCGGA	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	432
Kzo9I	GATC	6 cut(s)	88, 186, 387, 411, 432, 504
LmnI	GCTCC	6 cut(s)	120, 427, 467, 648, 677, 1115
LweI	GCATC	4 cut(s)	132, 852, 860, 1015
MaeII	ACGT	2 cut(s)	300, 513
MaeIII	GTNAC	7 cut(s)	139, 304, 514, 581, 817, 1009, 1070
MalI	GATC	6 cut(s)	90, 188, 389, 413, 434, 506
MboI	GATC	6 cut(s)	88, 186, 387, 411, 432, 504
MboII	GAAGA	6 cut(s)	25, 31, 235, 631, 1113, 1155
MfeI	CAATTG	2 cut(s)	252, 1204
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	3 cut(s)	381, 480, 1201
MluCI	AATT	6 cut(s)	214, 252, 708, 742, 1048, 1204
MlyI	GAGTC	4 cut(s)	305, 343, 531, 578
Mph1103I	ATGCAT	1 cut(s)	500
MroI	TCCGGA	1 cut(s)	176
MroXI	GAANNNNTTC	2 cut(s)	443, 1216
MslI	CAYNNNNRTG	1 cut(s)	1023
MspI	CCGG	5 cut(s)	145, 177, 486, 560, 1113
MspR9I	CCNGG	7 cut(s)	145, 345, 371, 455, 561, 800, 965
MunI	CAATTG	2 cut(s)	252, 1204
Mva1269I	GAATGC	1 cut(s)	574
MvaI	CCWGG	5 cut(s)	345, 371, 455, 800, 965
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	4 cut(s)	204, 248, 495, 1109
NciI	CCSGG	2 cut(s)	145, 561
NdeII	GATC	6 cut(s)	88, 186, 387, 411, 432, 504
NlaIV	GGNNCC	6 cut(s)	13, 175, 469, 650, 718, 1111
NmeAIII	GCCGAG	1 cut(s)	488
NmuCI	GTSAC	7 cut(s)	139, 304, 514, 581, 817, 1009, 1070
NsbI	TGCGCA	1 cut(s)	250
NsiI	ATGCAT	1 cut(s)	500
NspI	RCATGY	4 cut(s)	362, 409, 814, 1078
NspV	TTCGAA	1 cut(s)	737
PagI	TCATGA	1 cut(s)	435
PciI	ACATGT	2 cut(s)	405, 1074
PcsI	WCGNNNNNNNCGW	2 cut(s)	327, 699
PctI	GAATGC	1 cut(s)	574
PdmI	GAANNNNTTC	2 cut(s)	443, 1216
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	281
Ple19I	CGATCG	1 cut(s)	189
PleI	GAGTC	4 cut(s)	305, 343, 531, 578
PpsI	GAGTC	4 cut(s)	305, 343, 531, 578
Ppu21I	YACGTR	2 cut(s)	301, 514
PscI	ACATGT	2 cut(s)	405, 1074
Psp6I	CCWGG	5 cut(s)	343, 369, 453, 798, 963
PspFI	CCCAGC	1 cut(s)	775
PspGI	CCWGG	5 cut(s)	343, 369, 453, 798, 963
PspN4I	GGNNCC	6 cut(s)	13, 175, 469, 650, 718, 1111
PspPI	GGNCC	5 cut(s)	11, 174, 491, 664, 717
PsrI	GAACNNNNNNTAC	4 cut(s)	87, 119, 890, 922
PsuI	RGATCY	1 cut(s)	88
PvuI	CGATCG	1 cut(s)	189
RsaI	GTAC	4 cut(s)	105, 114, 512, 926
RsaNI	GTAC	4 cut(s)	104, 113, 511, 925
RseI	CAYNNNNRTG	1 cut(s)	1023
SalI	GTCGAC	1 cut(s)	701
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	6 cut(s)	88, 186, 387, 411, 432, 504
Sau96I	GGNCC	5 cut(s)	11, 174, 491, 664, 717
SchI	GAGTC	4 cut(s)	305, 343, 531, 578
ScrFI	CCNGG	7 cut(s)	145, 345, 371, 455, 561, 800, 965
SduI	GDGCHC	3 cut(s)	381, 480, 1201
SfaNI	GCATC	4 cut(s)	132, 852, 860, 1015
SfuI	TTCGAA	1 cut(s)	737
SinI	GGWCC	3 cut(s)	174, 664, 717
SmiMI	CAYNNNNRTG	1 cut(s)	1023
SmlI	CTYRAG	2 cut(s)	419, 1141
SmoI	CTYRAG	2 cut(s)	419, 1141
Sse9I	AATT	6 cut(s)	214, 252, 708, 742, 1048, 1204
SsiI	CCGC	4 cut(s)	202, 229, 279, 489
StyD4I	CCNGG	7 cut(s)	143, 343, 369, 453, 559, 798, 963
TaaI	ACNGT	3 cut(s)	623, 785, 1088
TaiI	ACGT	2 cut(s)	303, 516
TaqI	TCGA	6 cut(s)	189, 396, 410, 680, 702, 737
TasI	AATT	6 cut(s)	214, 252, 708, 742, 1048, 1204
TatI	WGTACW	2 cut(s)	103, 112
TauI	GCSGC	1 cut(s)	282
TscAI	CASTG	3 cut(s)	727, 790, 946
TseFI	GTSAC	7 cut(s)	139, 304, 514, 581, 817, 1009, 1070
Tsp45I	GTSAC	7 cut(s)	139, 304, 514, 581, 817, 1009, 1070
TspDTI	ATGAA	3 cut(s)	452, 521, 701
TspRI	CASTG	3 cut(s)	727, 790, 946
VneI	GTGCAC	2 cut(s)	476, 1197
VpaK11BI	GGWCC	3 cut(s)	174, 664, 717
XceI	RCATGY	4 cut(s)	362, 409, 814, 1078
XmiI	GTMKAC	1 cut(s)	702
XmnI	GAANNNNTTC	2 cut(s)	443, 1216
Zsp2I	ATGCAT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.