Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

62645151 .. 62647914

Gene Structure 2764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0511700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGTTATTCTCTCTCCCTCTCTCTCTCTCTTCACCTCCAATCCAAACCTCTTCTTCTTCAGGTACTCTTCATCTCCATCTCTTACTTCAACAGTGGTGCACGTGCACCAGCAGAGCAAATGCAGAGTACTTGAACCTGAACCATGCTCAAAACCCAATTTCCAAAATGGGTTCTGCAGCAGAAGAGAGTTATTGCTGTTTGGCCTTTCTTCTCCCCTCTTAACAGTTTTGCCATCTTCAGGGTCCCTTGCAGAAGAAGATGTGAAAATGGCTTCGTTTGCTGATGACATAAATTCTTATTCTTATCTCTACCCGGTGGAGTTGCAATCTAAGAAGGTCATCTTCAAATGGGTGGAATCCAGAAAGCCGGAACGCTATTCATCAGCTGCTCCATTATCTCCTGATGCACGCCTGCGCATTGTCTCTGAGCGTGTTGACATTATCGATAATCTCATAATTTCCATTTCGTTTTGTCTGATTCAGATAGGTCCCCCAAATTCAAAGATTATAAAATCACCGGACAAGAGTACCTGGACTGCAAAAGATGTTGCTGATTCTGTTTTGGCTGACAAGTCTGCATTGCGGGTTACCTCAACTCAGCGAATGGCTGAGAGTTCAGTTCTTGATGCACATACTAGTGAAATTGATGGTCAGCCATATTGGAATTTTGAGTACCTTGTCCGCAAAGCACCCACAAAAACTGCTCAAGAATCTAACAGTTACCGGCACTATGTGGCTTCAACAACCGAACGAGATGGTTATTTGTACTGTATAAACGCTTCAACTCTCAACAAGCAGTGGAACATTATGGGACCTATCTTGCAAAAGACTGTAGATTCATTTCACCTTCTCCCTCCCACAGAAAACTATGTTCCTCCATTCAAGGATCCATGGAGATTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

301

Amino Acids

34.06

Weight (kDa)

8.18

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	90 - 282	5.8e-14	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	509
Acc16I	TGCGCA	1 cut(s)	416
AciI	CCGC	2 cut(s)	583, 682
AclWI	GGATC	2 cut(s)	881, 894
AcsI	RAATTY	3 cut(s)	292, 496, 664
AcuI	CTGAAG	2 cut(s)	43, 222
AcvI	CACGTG	1 cut(s)	103
AdeI	CACNNNGTG	1 cut(s)	733
AfaI	GTAC	5 cut(s)	65, 129, 529, 674, 767
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	7 cut(s)	90, 134, 346, 501, 741, 783, 883
AhlI	ACTAGT	1 cut(s)	635
AjnI	CCWGG	1 cut(s)	530
AluBI	AGCT	1 cut(s)	386
AluI	AGCT	1 cut(s)	386
Alw21I	GWGCWC	2 cut(s)	102, 108
Alw26I	GTCTC	1 cut(s)	427
Alw44I	GTGCAC	2 cut(s)	98, 104
AlwI	GGATC	2 cut(s)	881, 894
AoxI	GGCC	1 cut(s)	202
ApaLI	GTGCAC	2 cut(s)	98, 104
ApeKI	GCWGC	2 cut(s)	177, 386
ApoI	RAATTY	3 cut(s)	292, 496, 664
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	3 cut(s)	243, 488, 812
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	3 cut(s)	25, 507, 836
AvaII	GGWCC	3 cut(s)	243, 488, 812
BaeGI	GKGCMC	2 cut(s)	102, 108
BaeI	ACNNNNGTAYC	2 cut(s)	511, 544
BamHI	GGATCC	1 cut(s)	886
BarI	GAAGNNNNNNTAC	2 cut(s)	763, 795
BbrPI	CACGTG	1 cut(s)	103
Bbv12I	GWGCWC	2 cut(s)	102, 108
BbvI	GCAGC	2 cut(s)	189, 373
BccI	CCATC	4 cut(s)	85, 241, 641, 749
BciT130I	CCWGG	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	427
BcuI	ACTAGT	1 cut(s)	635
BfaI	CTAG	1 cut(s)	636
BfmI	CTRYAG	2 cut(s)	175, 831
BisI	GCNGC	2 cut(s)	178, 387
BlsI	GCNGC	2 cut(s)	179, 388
BmcAI	AGTACT	1 cut(s)	129
Bme1390I	CCNGG	2 cut(s)	314, 532
Bme18I	GGWCC	3 cut(s)	243, 488, 812
BmgT120I	GGNCC	3 cut(s)	243, 488, 812
BmiI	GGNNCC	5 cut(s)	244, 245, 490, 813, 888
BmrFI	CCNGG	2 cut(s)	314, 532
BmsI	GCATC	2 cut(s)	394, 616
BpuEI	CTTGAG	1 cut(s)	690
BpuMI	CCSGG	1 cut(s)	314
Bsa29I	ATCGAT	1 cut(s)	444
BsaAI	YACGTR	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	890
BsaWI	WCCGGW	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse118I	RCCGGY	1 cut(s)	723
Bse3DI	GCAATG	1 cut(s)	578
BseBI	CCWGG	1 cut(s)	532
BseCI	ATCGAT	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	890
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	578
BseMII	CTCAG	3 cut(s)	417, 600, 611
BseSI	GKGCMC	2 cut(s)	102, 108
BseXI	GCAGC	2 cut(s)	189, 373
BshFI	GGCC	1 cut(s)	204
BshVI	ATCGAT	1 cut(s)	444
BsiHKAI	GWGCWC	2 cut(s)	102, 108
BsiSI	CCGG	4 cut(s)	314, 368, 518, 724
BslFI	GGGAC	3 cut(s)	229, 474, 825
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	427
BsmFI	GGGAC	3 cut(s)	229, 474, 825
BsnI	GGCC	1 cut(s)	204
Bsp1286I	GDGCHC	2 cut(s)	102, 108
Bsp143I	GATC	1 cut(s)	886
Bsp19I	CCATGG	1 cut(s)	890
BspACI	CCGC	2 cut(s)	583, 682
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	3 cut(s)	418, 601, 610
BspDI	ATCGAT	1 cut(s)	444
BspLI	GGNNCC	5 cut(s)	244, 245, 490, 813, 888
BspMAI	CTGCAG	1 cut(s)	179
BspPI	GGATC	2 cut(s)	881, 894
BsrDI	GCAATG	1 cut(s)	578
BsrFI	RCCGGY	1 cut(s)	723
BssAI	RCCGGY	1 cut(s)	723
BssECI	CCNNGG	1 cut(s)	890
BssMI	GATC	1 cut(s)	886
BssT1I	CCWWGG	1 cut(s)	890
Bst2UI	CCWGG	1 cut(s)	532
Bst4CI	ACNGT	5 cut(s)	94, 226, 719, 770, 832
Bst6I	CTCTTC	4 cut(s)	35, 56, 73, 178
BstBAI	YACGTR	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	409, 413
BstDEI	CTNAG	4 cut(s)	330, 426, 597, 609
BstDSI	CCRYGG	1 cut(s)	890
BstEII	GGTNACC	1 cut(s)	586
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	1 cut(s)	889
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	1 cut(s)	886
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	1 cut(s)	532
BstPI	GGTNACC	1 cut(s)	586
BstSCI	CCNGG	2 cut(s)	312, 530
BstSFI	CTRYAG	2 cut(s)	175, 831
BstSLI	GKGCMC	2 cut(s)	102, 108
BstV1I	GCAGC	2 cut(s)	189, 373
BstX2I	RGATCY	1 cut(s)	886
BstYI	RGATCY	1 cut(s)	886
Bsu15I	ATCGAT	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	204
BsuTUI	ATCGAT	1 cut(s)	444
BtgI	CCRYGG	1 cut(s)	890
BtsI	GCAGTG	1 cut(s)	803
BtsIMutI	CAGTG	2 cut(s)	99, 803
Cac8I	GCNNGC	2 cut(s)	409, 413
CfoI	GCGC	1 cut(s)	417
Cfr10I	RCCGGY	1 cut(s)	723
Cfr13I	GGNCC	3 cut(s)	243, 488, 812
ClaI	ATCGAT	1 cut(s)	444
Csp6I	GTAC	5 cut(s)	64, 128, 528, 673, 766
CviAII	CATG	2 cut(s)	144, 891
CviJI	RGCY	8 cut(s)	204, 272, 367, 386, 566, 608, 655, 737
CviKI_1	RGCY	8 cut(s)	204, 272, 367, 386, 566, 608, 655, 737
CviQI	GTAC	5 cut(s)	64, 128, 528, 673, 766
DdeI	CTNAG	4 cut(s)	330, 426, 597, 609
DpnI	GATC	1 cut(s)	888
DpnII	GATC	1 cut(s)	886
DraIII	CACNNNGTG	1 cut(s)	733
Eam1104I	CTCTTC	4 cut(s)	35, 56, 73, 178
EarI	CTCTTC	4 cut(s)	35, 56, 73, 178
Eco130I	CCWWGG	1 cut(s)	890
Eco47I	GGWCC	3 cut(s)	243, 488, 812
Eco57I	CTGAAG	2 cut(s)	43, 222
Eco72I	CACGTG	1 cut(s)	103
Eco91I	GGTNACC	1 cut(s)	586
EcoO109I	RGGNCCY	3 cut(s)	243, 488, 812
EcoO65I	GGTNACC	1 cut(s)	586
EcoRII	CCWGG	1 cut(s)	530
EcoT14I	CCWWGG	1 cut(s)	890
ErhI	CCWWGG	1 cut(s)	890
FaeI	CATG	2 cut(s)	147, 894
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FaqI	GGGAC	3 cut(s)	229, 474, 825
FatI	CATG	2 cut(s)	143, 890
FauI	CCCGC	1 cut(s)	576
Fnu4HI	GCNGC	2 cut(s)	178, 387
Fsp4HI	GCNGC	2 cut(s)	178, 387
FspBI	CTAG	1 cut(s)	636
FspI	TGCGCA	1 cut(s)	416
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	2 cut(s)	178, 387
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	4 cut(s)	314, 368, 518, 724
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	2 cut(s)	147, 894
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	5 cut(s)	356, 478, 554, 710, 836
HpaII	CCGG	4 cut(s)	314, 368, 518, 724
HphI	GGTGA	3 cut(s)	25, 507, 836
Hpy166II	GTNNAC	3 cut(s)	100, 106, 436
Hpy188I	TCNGA	3 cut(s)	427, 477, 483
Hpy188III	TCNNGA	4 cut(s)	360, 401, 623, 707
Hpy8I	GTNNAC	3 cut(s)	100, 106, 436
HpyAV	CCTTC	2 cut(s)	328, 857
HpyCH4III	ACNGT	5 cut(s)	94, 226, 719, 770, 832
HpyCH4IV	ACGT	1 cut(s)	102
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	4 cut(s)	330, 426, 597, 609
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	147, 894
HspAI	GCGC	1 cut(s)	415
KflI	GGGWCCC	1 cut(s)	243
Kzo9I	GATC	1 cut(s)	886
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	2 cut(s)	189, 373
LweI	GCATC	2 cut(s)	394, 616
MaeI	CTAG	1 cut(s)	636
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	586, 719
MalI	GATC	1 cut(s)	888
MboI	GATC	1 cut(s)	886
MflI	RGATCY	1 cut(s)	886
MhlI	GDGCHC	2 cut(s)	102, 108
MluCI	AATT	6 cut(s)	157, 292, 456, 496, 642, 664
MnlI	CCTC	7 cut(s)	28, 46, 59, 227, 601, 864, 885
MseI	TTAA	1 cut(s)	221
MslI	CAYNNNNRTG	1 cut(s)	636
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	4 cut(s)	314, 368, 518, 724
MspR9I	CCNGG	2 cut(s)	314, 532
MvaI	CCWGG	1 cut(s)	532
MwoI	GCNNNNNNNGC	1 cut(s)	278
NciI	CCSGG	1 cut(s)	314
NcoI	CCATGG	1 cut(s)	890
NdeII	GATC	1 cut(s)	886
NlaIII	CATG	2 cut(s)	147, 894
NlaIV	GGNNCC	5 cut(s)	244, 245, 490, 813, 888
NsbI	TGCGCA	1 cut(s)	416
PfeI	GAWTC	5 cut(s)	356, 478, 554, 710, 836
PkrI	GCNGC	2 cut(s)	179, 388
PmaCI	CACGTG	1 cut(s)	103
PmlI	CACGTG	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	103
PpuMI	RGGWCCY	3 cut(s)	243, 488, 812
PsiI	TTATAA	1 cut(s)	509
Psp5II	RGGWCCY	3 cut(s)	243, 488, 812
Psp6I	CCWGG	1 cut(s)	530
PspCI	CACGTG	1 cut(s)	103
PspEI	GGTNACC	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	5 cut(s)	244, 245, 490, 813, 888
PspPI	GGNCC	3 cut(s)	243, 488, 812
PspPPI	RGGWCCY	3 cut(s)	243, 488, 812
PstI	CTGCAG	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	886
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	5 cut(s)	65, 129, 529, 674, 767
RsaNI	GTAC	5 cut(s)	64, 128, 528, 673, 766
RseI	CAYNNNNRTG	1 cut(s)	636
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	2 cut(s)	178, 387
Sau3AI	GATC	1 cut(s)	886
Sau96I	GGNCC	3 cut(s)	243, 488, 812
ScaI	AGTACT	1 cut(s)	129
ScrFI	CCNGG	2 cut(s)	314, 532
SduI	GDGCHC	2 cut(s)	102, 108
SfaNI	GCATC	2 cut(s)	394, 616
SfcI	CTRYAG	2 cut(s)	175, 831
SinI	GGWCC	3 cut(s)	243, 488, 812
SmiMI	CAYNNNNRTG	1 cut(s)	636
SmlI	CTYRAG	1 cut(s)	705
SmoI	CTYRAG	1 cut(s)	705
SpeI	ACTAGT	1 cut(s)	635
Sse9I	AATT	6 cut(s)	157, 292, 456, 496, 642, 664
SsiI	CCGC	2 cut(s)	583, 682
SspMI	CTAG	1 cut(s)	636
StyD4I	CCNGG	2 cut(s)	312, 530
StyI	CCWWGG	1 cut(s)	890
TaaI	ACNGT	5 cut(s)	94, 226, 719, 770, 832
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	444
TasI	AATT	6 cut(s)	157, 292, 456, 496, 642, 664
TatI	WGTACW	2 cut(s)	127, 765
TfiI	GAWTC	5 cut(s)	356, 478, 554, 710, 836
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	2 cut(s)	99, 803
TseI	GCWGC	2 cut(s)	177, 386
TspDTI	ATGAA	3 cut(s)	60, 369, 828
TspRI	CASTG	2 cut(s)	99, 803
VneI	GTGCAC	2 cut(s)	98, 104
VpaK11BI	GGWCC	3 cut(s)	243, 488, 812
XapI	RAATTY	3 cut(s)	292, 496, 664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	897
XspI	CTAG	1 cut(s)	636
ZrmI	AGTACT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.