Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039860.1

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 901

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039860.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 782 bp

gtggccaatccatttctaatgggaatggaactgagattgtgagttttgaagataacaaatgggaagttttgaagctgtttggtgaatataataagcggcaaagcaagtatagagttgcaactgtaaggttcaacaagtctggaaacttgctggcttgtcaaaaggcaggaaagacagtagaaatattccatgagttgaatgaggctgaatcaaagcgtaaagcaaagcgcaggcttcgccggaagaaagagaagaaaaatgcaaaatgggagcctgaggtgatggaagatggagacataaatcatgaagctggagaagaaggaaataatcatgtggttactgtctctgatgtctttgaacatctccaaactattcgagctgccaaaaagatatgttccatctctttctctccaaatcccccaaagaatttgcgagctacattagctctgtcgctgaacaataatttgttggagttttattctgttgaagacaacagctttgtgatgtcaactagtgatactgaagtcaagctttggaatcctagtaccggtaactgccttcatactattgacattccaaatctagtgagtggttttatccttcccaataaaaaatatgcacttgttggatctaagagtggaaatatggagattattgacaccgggaatgccactgtcactgaagtagtggaagcacatggtggttctgttcaatctattgtaagacttcccaatgaaaatggttttgtcgcaggaagtttggatggttatgttaagttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

259

Amino Acids

28.77

Weight (kDa)

8.35

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	1 cut(s)	636
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	426
AcuI	CTGAAG	2 cut(s)	542, 701
AdeI	CACNNNGTG	1 cut(s)	700
AfaI	GTAC	1 cut(s)	546
AfiI	CCNNNNNNNGG	1 cut(s)	547
AgeI	ACCGGT	1 cut(s)	547
AgsI	TTSAA	7 cut(s)	49, 72, 132, 198, 358, 487, 712
AhlI	ACTAGT	1 cut(s)	511
AluBI	AGCT	7 cut(s)	75, 310, 379, 436, 445, 497, 531
AluI	AGCT	7 cut(s)	75, 310, 379, 436, 445, 497, 531
Alw26I	GTCTC	2 cut(s)	287, 348
AlwI	GGATC	1 cut(s)	636
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	379
ApoI	RAATTY	1 cut(s)	426
ArsI	GACNNNNNNTTYG	2 cut(s)	481, 513
AsiGI	ACCGGT	1 cut(s)	547
AspLEI	GCGC	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	663
AsuHPI	GGTGA	2 cut(s)	94, 291
AxyI	CCTNAGG	1 cut(s)	275
BaeI	ACNNNNGTAYC	2 cut(s)	509, 542
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	494
BbvI	GCAGC	1 cut(s)	366
BccI	CCATC	4 cut(s)	276, 283, 406, 757
BcnI	CCSGG	1 cut(s)	663
BcoDI	GTCTC	2 cut(s)	287, 348
BcuI	ACTAGT	1 cut(s)	511
BfaI	CTAG	4 cut(s)	512, 542, 583, 780
BisI	GCNGC	2 cut(s)	97, 380
BlsI	GCNGC	2 cut(s)	98, 381
Bme1390I	CCNGG	1 cut(s)	663
BmiI	GGNNCC	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	663
BpiI	GAAGAC	1 cut(s)	494
BpmI	CTGGAG	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	663
BsaWI	WCCGGW	1 cut(s)	547
Bsc4I	CCNNNNNNNGG	1 cut(s)	547
Bse118I	RCCGGY	1 cut(s)	547
Bse21I	CCTNAGG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	768
BseLI	CCNNNNNNNGG	1 cut(s)	547
BseMII	CTCAG	2 cut(s)	23, 266
BseXI	GCAGC	1 cut(s)	366
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	547
BsiSI	CCGG	3 cut(s)	240, 548, 662
BslI	CCNNNNNNNGG	1 cut(s)	547
BsmAI	GTCTC	2 cut(s)	287, 348
BsmI	GAATGC	1 cut(s)	672
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	628
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	24, 267
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	636
BsrFI	RCCGGY	1 cut(s)	547
BssAI	RCCGGY	1 cut(s)	547
BssMI	GATC	1 cut(s)	628
Bst4CI	ACNGT	4 cut(s)	123, 177, 342, 675
BstC8I	GCNNGC	3 cut(s)	152, 232, 434
BstDEI	CTNAG	3 cut(s)	32, 275, 632
BstF5I	GGATG	1 cut(s)	768
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	1 cut(s)	631
BstMAI	GTCTC	2 cut(s)	287, 348
BstMBI	GATC	1 cut(s)	628
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 442
BstSCI	CCNGG	1 cut(s)	661
BstV1I	GCAGC	1 cut(s)	366
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
Bsu36I	CCTNAGG	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	768
BtsIMutI	CAGTG	2 cut(s)	671, 677
Cac8I	GCNNGC	3 cut(s)	152, 232, 434
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	1 cut(s)	230
Cfr10I	RCCGGY	1 cut(s)	547
Csp6I	GTAC	1 cut(s)	545
CspAI	ACCGGT	1 cut(s)	547
CviAII	CATG	4 cut(s)	190, 304, 331, 697
CviQI	GTAC	1 cut(s)	545
DdeI	CTNAG	3 cut(s)	32, 275, 632
DpnI	GATC	1 cut(s)	630
DpnII	GATC	1 cut(s)	628
DraIII	CACNNNGTG	1 cut(s)	700
EaeI	YGGCCR	1 cut(s)	3
Eco57I	CTGAAG	2 cut(s)	542, 701
Eco81I	CCTNAGG	1 cut(s)	275
FaeI	CATG	4 cut(s)	193, 307, 334, 700
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FatI	CATG	4 cut(s)	189, 303, 330, 696
Fnu4HI	GCNGC	2 cut(s)	97, 380
FokI	GGATG	1 cut(s)	775
Fsp4HI	GCNGC	2 cut(s)	97, 380
FspBI	CTAG	4 cut(s)	512, 542, 583, 780
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	2 cut(s)	97, 380
GsuI	CTGGAG	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	240, 548, 662
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	4 cut(s)	193, 307, 334, 700
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	509
HindII	GTYRAC	1 cut(s)	509
HindIII	AAGCTT	1 cut(s)	529
HinfI	GANTC	2 cut(s)	208, 537
HpaII	CCGG	3 cut(s)	240, 548, 662
HphI	GGTGA	2 cut(s)	94, 291
Hpy166II	GTNNAC	1 cut(s)	509
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	2 cut(s)	140, 304
Hpy8I	GTNNAC	1 cut(s)	509
HpyAV	CCTTC	3 cut(s)	313, 568, 610
HpyCH4III	ACNGT	4 cut(s)	123, 177, 342, 675
HpyCH4V	TGCA	3 cut(s)	118, 262, 619
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 442
HpyF3I	CTNAG	3 cut(s)	32, 275, 632
Hsp92II	CATG	4 cut(s)	193, 307, 334, 700
HspAI	GCGC	1 cut(s)	228
Kzo9I	GATC	1 cut(s)	628
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	1 cut(s)	366
MaeI	CTAG	4 cut(s)	512, 542, 583, 780
MaeIII	GTNAC	3 cut(s)	336, 550, 675
MalI	GATC	1 cut(s)	630
MboI	GATC	1 cut(s)	628
MboII	GAAGA	6 cut(s)	61, 255, 264, 298, 328, 499
MflI	RGATCY	1 cut(s)	628
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	426, 462
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	449, 606
MnlI	CCTC	2 cut(s)	195, 270
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	773
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	240, 548, 662
MspR9I	CCNGG	1 cut(s)	663
Mva1269I	GAATGC	1 cut(s)	672
MwoI	GCNNNNNNNGC	2 cut(s)	236, 442
NciI	CCSGG	1 cut(s)	663
NdeII	GATC	1 cut(s)	628
NlaIII	CATG	4 cut(s)	193, 307, 334, 700
NlaIV	GGNNCC	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	675
PagI	TCATGA	1 cut(s)	303
PctI	GAATGC	1 cut(s)	672
PfeI	GAWTC	2 cut(s)	208, 537
PinAI	ACCGGT	1 cut(s)	547
PkrI	GCNGC	2 cut(s)	98, 381
PspN4I	GGNNCC	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	628
RsaI	GTAC	1 cut(s)	546
RsaNI	GTAC	1 cut(s)	545
SaqAI	TTAA	1 cut(s)	773
SatI	GCNGC	2 cut(s)	97, 380
Sau3AI	GATC	1 cut(s)	628
ScrFI	CCNGG	1 cut(s)	663
SetI	ASST	9 cut(s)	77, 130, 281, 312, 381, 438, 447, 499, 533
SpeI	ACTAGT	1 cut(s)	511
Sse9I	AATT	2 cut(s)	426, 462
SsiI	CCGC	1 cut(s)	96
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	4 cut(s)	512, 542, 583, 780
StyD4I	CCNGG	1 cut(s)	661
TaaI	ACNGT	4 cut(s)	123, 177, 342, 675
TaqI	TCGA	1 cut(s)	375
TasI	AATT	2 cut(s)	426, 462
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	208, 537
Tru1I	TTAA	1 cut(s)	773
Tru9I	TTAA	1 cut(s)	773
TscAI	CASTG	2 cut(s)	678, 684
TseFI	GTSAC	1 cut(s)	675
TseI	GCWGC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	675
TspDTI	ATGAA	3 cut(s)	320, 550, 749
TspRI	CASTG	2 cut(s)	678, 684
XapI	RAATTY	1 cut(s)	426
XspI	CTAG	4 cut(s)	512, 542, 583, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.