Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

59212543 .. 59214595

Gene Structure 2053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004419

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTCAACTAGTCACAATGCAGCAAAGATCTGGAATCCAAGGAATGGTTACTGCCTTGGAACTATTGACACAGGACTCGGCATGTGTGCTTTTATCCTTCCTTGTTGCAATAATAAGTTTGCACTTGTTGGAACCAGGGGTGGAACAATGGAAATTATTGACGTTGGGAGTGCAACTGTCACTCAAGTAGTGGAATTAAGCTCATGGTACGTGGCTCTGTTGAGTCTATTGCAAGAATTCCCAATGAAAATGGTTTTGTCACAGGAAGCTCAGATGGATTCTAAGTGCCTGCTGGTGTCAAATGTAAGAATGAAGAAGATTTATACTGATGTTCGTGTGGTTTCTGTCAGCCCTGATGCCAAATATCTTTTGGCGGCGTTGGACACCACACTAAAGTTAAAACAAGCTAGCGATTTGGAGTCGATGCTATTGGGGTTACCCTTCTCAGATGACCTGAAGATCTTGTCTCTCTGCAAGGATGTTGGTCTACGTCCTGATGAGGTTGAATTCATTACCAGGGTGGTTACACTGCTGCTGCAAAAAAGTTGTAGTCAGTTGATTTCCACTCCAGCTGTAAAACCAATATTGACTGGTTTAAAAGAGGTTCTTTATCCCAACTTAAAGGCAAAGAAGGATATTATTGGTTACAACCTTGCAGCAATGAATCATATCAAGCAATTGCATGATTCAAGATCAAATGCACCACTTCCAGATGCAATCTCCAAGCGTGGTGTAGGTGCACGTGCAAGTTGGAATGCGAAGACAGAAGAAGGTAAACGTAAAAAAAGTTCGAACAAGCGAACCGACGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

271

Amino Acids

29.6

Weight (kDa)

9.25

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_2nd	PF25172	1 - 133	2e-12	WDR3 second beta-propeller domain
Utp12	PF04003	127 - 226	1.1e-12	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	810
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	487
AciI	CCGC	1 cut(s)	374
AcsI	RAATTY	2 cut(s)	236, 506
AcuI	CTGAAG	1 cut(s)	476
AcvI	CACGTG	1 cut(s)	743
AcyI	GRCGYC	1 cut(s)	807
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	506, 690
AhlI	ACTAGT	1 cut(s)	8
AjnI	CCWGG	2 cut(s)	134, 515
AluBI	AGCT	4 cut(s)	201, 269, 407, 572
AluI	AGCT	4 cut(s)	201, 269, 407, 572
Alw21I	GWGCWC	1 cut(s)	742
Alw26I	GTCTC	1 cut(s)	471
Alw44I	GTGCAC	1 cut(s)	738
ApaLI	GTGCAC	1 cut(s)	738
ApeKI	GCWGC	4 cut(s)	20, 532, 535, 656
ApoI	RAATTY	2 cut(s)	236, 506
AsuII	TTCGAA	1 cut(s)	791
AsuNHI	GCTAGC	1 cut(s)	407
BaeGI	GKGCMC	1 cut(s)	742
BbrPI	CACGTG	1 cut(s)	743
BbsI	GAAGAC	1 cut(s)	767
Bbv12I	GWGCWC	1 cut(s)	742
BbvI	GCAGC	4 cut(s)	32, 519, 522, 668
BccI	CCATC	1 cut(s)	268
BciT130I	CCWGG	2 cut(s)	136, 517
BcoDI	GTCTC	1 cut(s)	471
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	2 cut(s)	9, 408
BglII	AGATCT	2 cut(s)	27, 459
BisI	GCNGC	5 cut(s)	21, 375, 533, 536, 657
BlsI	GCNGC	5 cut(s)	22, 376, 534, 537, 658
Bme1390I	CCNGG	2 cut(s)	136, 517
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	2 cut(s)	136, 517
BmsI	GCATC	3 cut(s)	346, 414, 703
BmtI	GCTAGC	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	767
BpmI	CTGGAG	1 cut(s)	552
Bpu14I	TTCGAA	1 cut(s)	791
BpuEI	CTTGAG	1 cut(s)	168
BsaAI	YACGTR	2 cut(s)	211, 743
BsaHI	GRCGYC	1 cut(s)	807
BsaJI	CCNNGG	4 cut(s)	38, 55, 135, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	595
Bse3DI	GCAATG	1 cut(s)	666
BseBI	CCWGG	2 cut(s)	136, 517
BseDI	CCNNGG	4 cut(s)	38, 55, 135, 516
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	2 cut(s)	284, 459
BseNI	ACTGG	1 cut(s)	595
BseSI	GKGCMC	1 cut(s)	742
BseXI	GCAGC	4 cut(s)	32, 519, 522, 668
BsiHKAI	GWGCWC	1 cut(s)	742
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	471
BsmI	GAATGC	1 cut(s)	760
Bsp119I	TTCGAA	1 cut(s)	791
Bsp1286I	GDGCHC	1 cut(s)	742
Bsp143I	GATC	3 cut(s)	27, 459, 692
BspACI	CCGC	1 cut(s)	374
BspCNI	CTCAG	2 cut(s)	283, 458
BspLI	GGNNCC	1 cut(s)	133
BspOI	GCTAGC	1 cut(s)	411
BspT104I	TTCGAA	1 cut(s)	791
BsrDI	GCAATG	1 cut(s)	666
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	4 cut(s)	38, 55, 135, 516
BssMI	GATC	3 cut(s)	27, 459, 692
BssNI	GRCGYC	1 cut(s)	807
BssT1I	CCWWGG	2 cut(s)	38, 55
Bst2UI	CCWGG	2 cut(s)	136, 517
Bst4CI	ACNGT	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	807
BstBAI	YACGTR	2 cut(s)	211, 743
BstBI	TTCGAA	1 cut(s)	791
BstC8I	GCNNGC	2 cut(s)	290, 409
BstDEI	CTNAG	3 cut(s)	270, 282, 445
BstEII	GGTNACC	1 cut(s)	435
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	3 cut(s)	30, 462, 695
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	3 cut(s)	27, 459, 692
BstNI	CCWGG	2 cut(s)	136, 517
BstNSI	RCATGY	1 cut(s)	85
BstPI	GGTNACC	1 cut(s)	435
BstSCI	CCNGG	2 cut(s)	134, 515
BstSLI	GKGCMC	1 cut(s)	742
BstV1I	GCAGC	4 cut(s)	32, 519, 522, 668
BstV2I	GAAGAC	1 cut(s)	767
BstX2I	RGATCY	2 cut(s)	27, 459
BstYI	RGATCY	2 cut(s)	27, 459
BtsCI	GGATG	1 cut(s)	484
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	1 cut(s)	527
Cac8I	GCNNGC	2 cut(s)	290, 409
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	3 cut(s)	82, 204, 683
CviJI	RGCY	6 cut(s)	201, 215, 269, 351, 407, 572
CviKI_1	RGCY	6 cut(s)	201, 215, 269, 351, 407, 572
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	3 cut(s)	270, 282, 445
DpnI	GATC	3 cut(s)	29, 461, 694
DpnII	GATC	3 cut(s)	27, 459, 692
DraI	TTTAAA	1 cut(s)	597
Eco130I	CCWWGG	2 cut(s)	38, 55
Eco57I	CTGAAG	1 cut(s)	476
Eco72I	CACGTG	1 cut(s)	743
Eco91I	GGTNACC	1 cut(s)	435
EcoO65I	GGTNACC	1 cut(s)	435
EcoRI	GAATTC	2 cut(s)	236, 506
EcoRII	CCWGG	2 cut(s)	134, 515
EcoT14I	CCWWGG	2 cut(s)	38, 55
ErhI	CCWWGG	2 cut(s)	38, 55
FaeI	CATG	3 cut(s)	85, 207, 686
FaiI	YATR	5 cut(s)	83, 205, 324, 669, 684
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FatI	CATG	3 cut(s)	81, 203, 682
FblI	GTMKAC	1 cut(s)	487
Fnu4HI	GCNGC	5 cut(s)	21, 375, 533, 536, 657
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	5 cut(s)	21, 375, 533, 536, 657
FspBI	CTAG	2 cut(s)	9, 408
GluI	GCNGC	5 cut(s)	21, 375, 533, 536, 657
GsuI	CTGGAG	1 cut(s)	552
Hin1I	GRCGYC	1 cut(s)	807
Hin1II	CATG	3 cut(s)	85, 207, 686
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	7 cut(s)	34, 75, 223, 278, 419, 664, 686
Hpy166II	GTNNAC	4 cut(s)	6, 488, 740, 776
Hpy188I	TCNGA	3 cut(s)	273, 448, 812
Hpy188III	TCNNGA	4 cut(s)	31, 494, 690, 710
Hpy8I	GTNNAC	4 cut(s)	6, 488, 740, 776
Hpy99I	CGWCG	1 cut(s)	809
HpyAV	CCTTC	4 cut(s)	107, 451, 625, 764
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	6 cut(s)	162, 210, 490, 742, 778, 807
HpyF3I	CTNAG	3 cut(s)	270, 282, 445
HpySE526I	ACGT	6 cut(s)	162, 210, 490, 742, 778, 807
Hsp92I	GRCGYC	1 cut(s)	807
Hsp92II	CATG	3 cut(s)	85, 207, 686
Kzo9I	GATC	3 cut(s)	27, 459, 692
Lsp1109I	GCAGC	4 cut(s)	32, 519, 522, 668
LweI	GCATC	3 cut(s)	346, 414, 703
MaeI	CTAG	2 cut(s)	9, 408
MaeII	ACGT	6 cut(s)	162, 210, 490, 742, 778, 807
MaeIII	GTNAC	7 cut(s)	11, 47, 178, 258, 435, 523, 644
MalI	GATC	3 cut(s)	29, 461, 694
MboI	GATC	3 cut(s)	27, 459, 692
MboII	GAAGA	5 cut(s)	325, 328, 469, 772, 779
MfeI	CAATTG	1 cut(s)	677
MflI	RGATCY	2 cut(s)	27, 459
MhlI	GDGCHC	1 cut(s)	742
MluCI	AATT	5 cut(s)	153, 194, 236, 506, 677
MlyI	GAGTC	3 cut(s)	69, 232, 428
MmeI	TCCRAC	3 cut(s)	109, 360, 731
MnlI	CCTC	2 cut(s)	493, 595
MseI	TTAA	4 cut(s)	197, 398, 596, 620
MspA1I	CMGCKG	1 cut(s)	572
MspR9I	CCNGG	2 cut(s)	136, 517
MunI	CAATTG	1 cut(s)	677
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	2 cut(s)	136, 517
NdeII	GATC	3 cut(s)	27, 459, 692
NheI	GCTAGC	1 cut(s)	407
NlaIII	CATG	3 cut(s)	85, 207, 686
NlaIV	GGNNCC	1 cut(s)	133
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	3 cut(s)	11, 178, 258
NspI	RCATGY	1 cut(s)	85
NspV	TTCGAA	1 cut(s)	791
PctI	GAATGC	1 cut(s)	760
PfeI	GAWTC	4 cut(s)	34, 278, 664, 686
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	5 cut(s)	22, 376, 534, 537, 658
PleI	GAGTC	3 cut(s)	69, 231, 427
PmaCI	CACGTG	1 cut(s)	743
PmlI	CACGTG	1 cut(s)	743
PpsI	GAGTC	3 cut(s)	69, 231, 427
Ppu21I	YACGTR	2 cut(s)	211, 743
Psp6I	CCWGG	2 cut(s)	134, 515
PspCI	CACGTG	1 cut(s)	743
PspEI	GGTNACC	1 cut(s)	435
PspGI	CCWGG	2 cut(s)	134, 515
PspN4I	GGNNCC	1 cut(s)	133
PsrI	GAACNNNNNNTAC	2 cut(s)	772, 804
PsuI	RGATCY	2 cut(s)	27, 459
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SaqAI	TTAA	4 cut(s)	197, 398, 596, 620
SatI	GCNGC	5 cut(s)	21, 375, 533, 536, 657
Sau3AI	GATC	3 cut(s)	27, 459, 692
SchI	GAGTC	3 cut(s)	69, 232, 428
ScrFI	CCNGG	2 cut(s)	136, 517
SduI	GDGCHC	1 cut(s)	742
SfaNI	GCATC	3 cut(s)	346, 414, 703
SfuI	TTCGAA	1 cut(s)	791
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
SpeI	ACTAGT	1 cut(s)	8
Sse9I	AATT	5 cut(s)	153, 194, 236, 506, 677
SsiI	CCGC	1 cut(s)	374
SspI	AATATT	1 cut(s)	585
SspMI	CTAG	2 cut(s)	9, 408
StyD4I	CCNGG	2 cut(s)	134, 515
StyI	CCWWGG	2 cut(s)	38, 55
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	6 cut(s)	165, 213, 493, 745, 781, 810
TaqI	TCGA	2 cut(s)	422, 791
TasI	AATT	5 cut(s)	153, 194, 236, 506, 677
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	4 cut(s)	34, 278, 664, 686
Tru1I	TTAA	4 cut(s)	197, 398, 596, 620
Tru9I	TTAA	4 cut(s)	197, 398, 596, 620
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	3 cut(s)	11, 178, 258
TseI	GCWGC	4 cut(s)	20, 532, 535, 656
Tsp45I	GTSAC	3 cut(s)	11, 178, 258
TspDTI	ATGAA	4 cut(s)	260, 326, 499, 677
TspRI	CASTG	1 cut(s)	534
Van91I	CCANNNNNTGG	1 cut(s)	44
VneI	GTGCAC	1 cut(s)	738
XapI	RAATTY	2 cut(s)	236, 506
XceI	RCATGY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	487
XspI	CTAG	2 cut(s)	9, 408
ZraI	GACGTC	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.