Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8259631.1

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 585

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8259631.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atccgacctggcaaaaagatatgttccatctctttttgtccaaaccctcccaagacttccctagccacaatagctttgtctctgagcgataatctatgcgtgttttattctcttgagagcgaagcaacaaaacaaacacgcgctatagacctccacggccaccgatcatctgtcacaagtgtagcgcttagctcagacaacacagttttgatgtcaaccagtcataatgcagcaaagatctggaatccaaccaatggttactgccttggaactattgacacaggattcgccatgtgtgcttttatccttccttcttgcaataacaagtttgcacttgttggaaccaagggtggaacaatggaaattattgacgttgggagtgcaactgtcactgaagtagtagaagcacatggtggctctgttcagtctattgcaagaattcccaatgaaaatggttttgtcacaggaagctcagatggttatgttaagttctgggaatatggagtcaaagaagtatgtcctgtgtaccttctcctgtttgaagttctaatcctatgttactatcattatcggttcttagggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

194

Amino Acids

20.96

Weight (kDa)

6.56

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	254
AccII	CGCG	1 cut(s)	141
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	438
AcuI	CTGAAG	1 cut(s)	414
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	527
AfeI	AGCGCT	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	542
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	3 cut(s)	74, 192, 471
AluI	AGCT	3 cut(s)	74, 192, 471
Alw26I	GTCTC	1 cut(s)	84
Aor51HI	AGCGCT	1 cut(s)	186
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	438
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
AspLEI	GCGC	2 cut(s)	143, 187
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	2 cut(s)	35, 470
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	188
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	1 cut(s)	231
BlpI	GCTNAGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	1 cut(s)	9
Bpu1102I	GCTNAGC	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	134
BsaJI	CCNNGG	3 cut(s)	154, 265, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	9
BseDI	CCNNGG	3 cut(s)	154, 265, 345
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	3 cut(s)	74, 207, 486
BseNI	ACTGG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	164, 237
Bsp1720I	GCTNAGC	1 cut(s)	188
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	3 cut(s)	75, 206, 485
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	219
BssECI	CCNNGG	3 cut(s)	154, 265, 345
BssMI	GATC	2 cut(s)	164, 237
BssT1I	CCWWGG	2 cut(s)	265, 345
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	2 cut(s)	205, 388
BstDEI	CTNAG	5 cut(s)	83, 188, 193, 472, 577
BstDSI	CCRYGG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	2 cut(s)	143, 187
BstKTI	GATC	2 cut(s)	167, 240
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	2 cut(s)	164, 237
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 296
BstNI	CCWGG	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	7
BstSFI	CTRYAG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	159
BtgI	CCRYGG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	390
CfoI	GCGC	2 cut(s)	143, 187
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	2 cut(s)	292, 410
CviJI	RGCY	6 cut(s)	65, 74, 159, 192, 417, 471
CviKI_1	RGCY	6 cut(s)	65, 74, 159, 192, 417, 471
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	5 cut(s)	83, 188, 193, 472, 577
DpnI	GATC	2 cut(s)	166, 239
DpnII	GATC	2 cut(s)	164, 237
DraIII	CACNNNGTG	1 cut(s)	413
EaeI	YGGCCR	1 cut(s)	157
Eco130I	CCWWGG	2 cut(s)	265, 345
Eco47III	AGCGCT	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	414
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	7
EcoT14I	CCWWGG	2 cut(s)	265, 345
ErhI	CCWWGG	2 cut(s)	265, 345
FaeI	CATG	2 cut(s)	295, 413
FatI	CATG	2 cut(s)	291, 409
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	2 cut(s)	142, 186
GluI	GCNGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	159
HhaI	GCGC	2 cut(s)	143, 187
Hin1II	CATG	2 cut(s)	295, 413
Hin6I	GCGC	2 cut(s)	141, 185
HinP1I	GCGC	2 cut(s)	141, 185
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	3 cut(s)	244, 285, 504
Hpy166II	GTNNAC	2 cut(s)	216, 526
Hpy188I	TCNGA	4 cut(s)	5, 84, 196, 475
Hpy188III	TCNNGA	2 cut(s)	113, 241
Hpy8I	GTNNAC	2 cut(s)	216, 526
HpyAV	CCTTC	3 cut(s)	317, 321, 539
HpyCH4III	ACNGT	2 cut(s)	205, 388
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	5 cut(s)	230, 318, 332, 383, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 296
HpyF3I	CTNAG	5 cut(s)	83, 188, 193, 472, 577
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	295, 413
HspAI	GCGC	2 cut(s)	141, 185
Kzo9I	GATC	2 cut(s)	164, 237
LpnPI	CCDG	8 cut(s)	21, 226, 232, 267, 450, 478, 534, 548
Lsp1109I	GCAGC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	5 cut(s)	172, 257, 388, 460, 557
MalI	GATC	2 cut(s)	166, 239
MboI	GATC	2 cut(s)	164, 237
MflI	RGATCY	1 cut(s)	237
MluCI	AATT	2 cut(s)	363, 438
MlyI	GAGTC	1 cut(s)	513
MmeI	TCCRAC	3 cut(s)	28, 272, 319
MnlI	CCTC	2 cut(s)	57, 161
MseI	TTAA	1 cut(s)	486
MspR9I	CCNGG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	9
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	71, 296
NdeII	GATC	2 cut(s)	164, 237
NlaIII	CATG	2 cut(s)	295, 413
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	3 cut(s)	172, 388, 460
PfeI	GAWTC	2 cut(s)	244, 285
PflMI	CCANNNNNTGG	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	237
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	164, 237
SchI	GAGTC	1 cut(s)	513
ScrFI	CCNGG	1 cut(s)	9
SetI	ASST	7 cut(s)	10, 76, 153, 194, 375, 473, 531
SfcI	CTRYAG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	2 cut(s)	363, 438
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	7
StyI	CCWWGG	2 cut(s)	265, 345
TaaI	ACNGT	2 cut(s)	205, 388
TaiI	ACGT	1 cut(s)	375
TasI	AATT	2 cut(s)	363, 438
TfiI	GAWTC	2 cut(s)	244, 285
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	3 cut(s)	172, 388, 460
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	3 cut(s)	172, 388, 460
TspDTI	ATGAA	1 cut(s)	462
TspRI	CASTG	1 cut(s)	397
Van91I	CCANNNNNTGG	1 cut(s)	254
XapI	RAATTY	1 cut(s)	438
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.