Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Forward (+)

9531594 .. 9534669

Gene Structure 3076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG121800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGTACGTGGCTCTGTTGAGTCTATTGCAAGAATTCCCAATGAAAATGGTTTTGTCACAGGAAGCTCAGATGGTTATGTTAAGTTCTGGGAATATGAAGTCAAACAAGATTCTAAGCGCCTGCTGGTGTCAAATGTAAGAATGAAGAAGATGGATACTGATGTTCGTGTGGTTTCTGTCAGCCCGGATGCCAAATATCTTTTGGTGGCTTTGGATACCACACTAAAGTTAAGACGAGCTAGCGATTTGGAGTCGATGCTATTGGGGTTACCCTTCTCAGATGACTTGAAGATCTTGTCTCTCTGCAAGGATGTTGGTCTACGTCCTGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

111

Amino Acids

12.49

Weight (kDa)

8.76

Isoelectric Point (pI)

31.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_2nd	PF25172	4 - 77	8.5e-13	WDR3 second beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	33
AfaI	GTAC	1 cut(s)	6
AgsI	TTSAA	1 cut(s)	289
AluBI	AGCT	2 cut(s)	66, 239
AluI	AGCT	2 cut(s)	66, 239
Alw26I	GTCTC	1 cut(s)	303
ApoI	RAATTY	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	120
AsuC2I	CCSGG	1 cut(s)	185
AsuNHI	GCTAGC	1 cut(s)	239
BaeI	ACNNNNGTAYC	2 cut(s)	147, 180
BccI	CCATC	2 cut(s)	65, 145
BciVI	GTATCC	2 cut(s)	148, 208
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	121
BfuI	GTATCC	2 cut(s)	148, 208
BglII	AGATCT	1 cut(s)	291
Bme1390I	CCNGG	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	2 cut(s)	178, 246
BmtI	GCTAGC	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	185
Bsa29I	ATCGAT	1 cut(s)	331
BsaAI	YACGTR	1 cut(s)	8
BseCI	ATCGAT	1 cut(s)	331
BseGI	GGATG	2 cut(s)	193, 316
BseMII	CTCAG	2 cut(s)	81, 291
BshVI	ATCGAT	1 cut(s)	331
BsiSI	CCGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	291, 328
BspCNI	CTCAG	2 cut(s)	80, 290
BspDI	ATCGAT	1 cut(s)	331
BspOI	GCTAGC	1 cut(s)	243
BssMI	GATC	2 cut(s)	291, 328
BstBAI	YACGTR	1 cut(s)	8
BstC8I	GCNNGC	2 cut(s)	122, 241
BstDEI	CTNAG	3 cut(s)	67, 114, 277
BstEII	GGTNACC	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	193, 316
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	2 cut(s)	294, 331
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	2 cut(s)	291, 328
BstPI	GGTNACC	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
Bsu15I	ATCGAT	1 cut(s)	331
BsuI	GTATCC	2 cut(s)	148, 208
BsuTUI	ATCGAT	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	193, 316
Cac8I	GCNNGC	2 cut(s)	122, 241
CfoI	GCGC	1 cut(s)	120
ClaI	ATCGAT	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	5
CviJI	RGCY	5 cut(s)	12, 66, 183, 209, 239
CviKI_1	RGCY	5 cut(s)	12, 66, 183, 209, 239
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	3 cut(s)	67, 114, 277
DpnI	GATC	2 cut(s)	293, 330
DpnII	GATC	2 cut(s)	291, 328
Eco91I	GGTNACC	1 cut(s)	267
EcoO65I	GGTNACC	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	33
FaiI	YATR	2 cut(s)	78, 96
FblI	GTMKAC	1 cut(s)	319
FokI	GGATG	2 cut(s)	200, 323
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	121
HapII	CCGG	1 cut(s)	185
HhaI	GCGC	1 cut(s)	120
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HinfI	GANTC	3 cut(s)	20, 110, 251
HpaII	CCGG	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	2 cut(s)	70, 280
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	1 cut(s)	283
HpyCH4IV	ACGT	2 cut(s)	7, 322
HpyCH4V	TGCA	2 cut(s)	29, 306
HpyF3I	CTNAG	3 cut(s)	67, 114, 277
HpySE526I	ACGT	2 cut(s)	7, 322
HspAI	GCGC	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	291, 328
LpnPI	CCDG	5 cut(s)	45, 73, 110, 134, 198
LweI	GCATC	2 cut(s)	178, 246
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	7, 322
MaeIII	GTNAC	2 cut(s)	55, 267
MalI	GATC	2 cut(s)	293, 330
MboI	GATC	2 cut(s)	291, 328
MboII	GAAGA	3 cut(s)	157, 160, 301
MflI	RGATCY	1 cut(s)	291
MluCI	AATT	1 cut(s)	33
MlyI	GAGTC	2 cut(s)	29, 260
MseI	TTAA	2 cut(s)	81, 230
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	185
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	2 cut(s)	291, 328
NheI	GCTAGC	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	110
PleI	GAGTC	2 cut(s)	28, 259
PpsI	GAGTC	2 cut(s)	28, 259
Ppu21I	YACGTR	1 cut(s)	8
PspEI	GGTNACC	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	291
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
SaqAI	TTAA	2 cut(s)	81, 230
Sau3AI	GATC	2 cut(s)	291, 328
SchI	GAGTC	2 cut(s)	29, 260
ScrFI	CCNGG	1 cut(s)	185
SetI	ASST	4 cut(s)	10, 68, 241, 325
SfaNI	GCATC	2 cut(s)	178, 246
Sse9I	AATT	1 cut(s)	33
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	183
TaiI	ACGT	2 cut(s)	10, 325
TaqI	TCGA	2 cut(s)	254, 331
TasI	AATT	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	81, 230
Tru9I	TTAA	2 cut(s)	81, 230
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	57, 111, 158
XapI	RAATTY	1 cut(s)	33
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	319
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.