Rmu_ssc0000421.1_g000010

WD40 repeats

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000421.1
Physical Location & Seq
Forward (+)
41900 .. 47523
5624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000421.1_g000010.1.cds

Sequence Viewer

Length: 1410 bp
atgatcgtccgtagtcttgatcctgaaaatgatcctcttcgtctgaaggatgatgacgaagatgtgctagagccagaagggtcttacttgagtacaataggcgtattattgtacttagctcaatgcaccggaccggacatctcgtttgcagtgaacttgttagctaagaagattgattcgaacccatcacacaccagaaaagccgccaacgctggcctgcgttctctatccccatcccaaaatgatataagtgttttggaaggttttgttgctgctgtgtacctctttgacccacacaaagaggttattgctcttcacgaagtggataatgctgttcgttttgaacaaatgaagcaaggctacatcaaaagtgacaacaccaagtataatcagcaacaacagactctcctcaaataccaaagtgaactagtcatcaggggggagacgcagacatcagggggaggtgtctacatgttcacctcgaaacgtgaaggggtgccgccttcggcgtcatcaaacattgcctacgacagttccggaaagcaccttttttccccgggcctggaaaaggtgggcgtctggaacgtgcgacaaggcatttgcgtcaaaacccctaactccttctgctgttggcatggatattctccggggccagtcacctccatcgcggtctcgccttcctcttctctgatagctaccgggtatagacatggtagcattagaatttgggactcccacaataaaatatgtgagaccatattcaacggtcatatgagggccgagggcatctatcgccttcgtgggcatggcaatctggtcactgacctcgtcttcttggacccttgtaagaaactcgattctaagcgcctgctggtgtcaaatgtaagaatgaagaagatggatactgatgttcgtgtggtttctgtcagccctgatgccaaacatcttttggtggctttggataccacactaaaggtgttctatatggattcactcaaacttttcctaaccttatatggtcacaagctgccagtgctatgtctggatgtctcatccgacggagatctgatagtgactggatctgaagacaaaaatgtgaagatttggaggctagattttggtgactgccacaaatcaatgtttgatcataagagcagtgttcagcgagtacaatttgtgccaaatacccattacttcgtcagtgttgggcaagataagcaagtaaactacttggttgctgataaatttgagttgcttttagctatgaagggacaccatgagggtgtttgttgccttgctattagtaattaccatggtaatttctttgtcacggatctcacgatcgatcaattcgccgctgggatcgtactgatgagccattttttcttgaggaagaaagagaaaaactga

Protein Analysis

469

Amino Acids

52.34

Weight (kDa)

7.62

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 496
AccI GTMKAC 1 cut(s) 468
AccII CGCG 1 cut(s) 668
AccIII TCCGGA 1 cut(s) 536
AciI CCGC 4 cut(s) 204, 500, 668, 1356
AclWI GGATC 5 cut(s) 14, 26, 1087, 1341, 1370
AcsI RAATTY 2 cut(s) 723, 1244
AcuI CTGAAG 2 cut(s) 65, 1104
AcyI GRCGYC 2 cut(s) 509, 576
AdeI CACNNNGTG 1 cut(s) 322
AfaI GTAC 5 cut(s) 94, 113, 281, 1170, 1368
AfiI CCNNNNNNNGG 2 cut(s) 562, 568
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 2 cut(s) 344, 763
AhlI ACTAGT 1 cut(s) 427
AjnI CCWGG 1 cut(s) 561
AluBI AGCT 5 cut(s) 119, 164, 695, 1027, 1262
AluI AGCT 5 cut(s) 119, 164, 695, 1027, 1262
Alw26I GTCTC 4 cut(s) 437, 676, 746, 1054
AlwI GGATC 5 cut(s) 14, 26, 1087, 1341, 1370
Ama87I CYCGRG 1 cut(s) 556
Aor13HI TCCGGA 1 cut(s) 536
AoxI GGCC 4 cut(s) 214, 559, 650, 777
ApeKI GCWGC 2 cut(s) 272, 1027
ApoI RAATTY 2 cut(s) 723, 1244
ArsI GACNNNNNNTTYG 4 cut(s) 128, 160, 582, 614
AspLEI GCGC 1 cut(s) 867
AspS9I GGNCC 5 cut(s) 131, 559, 650, 777, 838
AsuC2I CCSGG 4 cut(s) 557, 558, 648, 700
AsuHPI GGTGA 3 cut(s) 469, 649, 1133
AsuII TTCGAA 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 556
AvaII GGWCC 2 cut(s) 131, 838
BaeI ACNNNNGTAYC 2 cut(s) 894, 927
BanI GGYRCC 1 cut(s) 496
BarI GAAGNNNNNNTAC 2 cut(s) 344, 376
BbsI GAAGAC 2 cut(s) 823, 1092
BbvI GCAGC 2 cut(s) 259, 1014
BccI CCATC 4 cut(s) 193, 241, 671, 892
BciT130I CCWGG 1 cut(s) 563
BciVI GTATCC 2 cut(s) 895, 955
BclI TGATCA 1 cut(s) 1144
BcnI CCSGG 4 cut(s) 557, 558, 648, 700
BcoDI GTCTC 4 cut(s) 437, 676, 746, 1054
BcuI ACTAGT 1 cut(s) 427
BfaI CTAG 3 cut(s) 68, 428, 1112
BfoI RGCGCY 1 cut(s) 868
BfuI GTATCC 2 cut(s) 895, 955
BglII AGATCT 1 cut(s) 1063
BisI GCNGC 5 cut(s) 204, 273, 500, 1028, 1356
BlsI GCNGC 5 cut(s) 205, 274, 501, 1029, 1357
Bme1390I CCNGG 5 cut(s) 557, 558, 563, 648, 700
Bme18I GGWCC 2 cut(s) 131, 838
BmeT110I CYCGRG 1 cut(s) 556
BmgT120I GGNCC 5 cut(s) 131, 559, 650, 777, 838
BmiI GGNNCC 3 cut(s) 498, 651, 840
BmrFI CCNGG 5 cut(s) 557, 558, 563, 648, 700
BmsI GCATC 2 cut(s) 795, 925
BpiI GAAGAC 2 cut(s) 823, 1092
Bpu14I TTCGAA 1 cut(s) 179
BpuEI CTTGAG 2 cut(s) 109, 1408
BpuMI CCSGG 4 cut(s) 557, 558, 648, 700
Bsa29I ATCGAT 1 cut(s) 1344
BsaHI GRCGYC 2 cut(s) 509, 576
BsaI GGTCTC 2 cut(s) 676, 746
BsaJI CCNNGG 5 cut(s) 555, 556, 647, 780, 1312
BsaWI WCCGGW 3 cut(s) 128, 133, 536
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 562, 568
Bse1I ACTGG 3 cut(s) 653, 1031, 1081
Bse3DI GCAATG 1 cut(s) 519
BseAI TCCGGA 1 cut(s) 536
BseBI CCWGG 1 cut(s) 563
BseCI ATCGAT 1 cut(s) 1344
BseDI CCNNGG 5 cut(s) 555, 556, 647, 780, 1312
BseGI GGATG 4 cut(s) 55, 233, 1051, 1052
BseLI CCNNNNNNNGG 2 cut(s) 562, 568
BseMI GCAATG 1 cut(s) 519
BseNI ACTGG 3 cut(s) 653, 1031, 1081
BseRI GAGGAG 1 cut(s) 398
BseXI GCAGC 2 cut(s) 259, 1014
BseYI CCCAGC 1 cut(s) 1358
Bsh1236I CGCG 1 cut(s) 668
Bsh1285I CGRYCG 1 cut(s) 1344
BshFI GGCC 4 cut(s) 216, 561, 652, 779
BshNI GGYRCC 1 cut(s) 496
BshVI ATCGAT 1 cut(s) 1344
BsiEI CGRYCG 1 cut(s) 1344
BsiHKCI CYCGRG 1 cut(s) 556
BsiSI CCGG 6 cut(s) 129, 134, 537, 557, 647, 699
BslFI GGGAC 2 cut(s) 743, 1284
BslI CCNNNNNNNGG 2 cut(s) 562, 568
BsmAI GTCTC 4 cut(s) 437, 676, 746, 1054
BsmBI CGTCTC 1 cut(s) 437
BsmFI GGGAC 2 cut(s) 743, 1284
BsnI GGCC 4 cut(s) 216, 561, 652, 779
Bso31I GGTCTC 2 cut(s) 676, 746
BsoBI CYCGRG 1 cut(s) 556
Bsp119I TTCGAA 1 cut(s) 179
Bsp13I TCCGGA 1 cut(s) 536
Bsp19I CCATGG 1 cut(s) 1312
BspACI CCGC 4 cut(s) 204, 500, 668, 1356
BspANI GGCC 4 cut(s) 216, 561, 652, 779
BspDI ATCGAT 1 cut(s) 1344
BspEI TCCGGA 1 cut(s) 536
BspFNI CGCG 1 cut(s) 668
BspLI GGNNCC 3 cut(s) 498, 651, 840
BspPI GGATC 5 cut(s) 14, 26, 1087, 1341, 1370
BspQI GCTCTTC 1 cut(s) 318
BspT104I TTCGAA 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 496
BspTNI GGTCTC 2 cut(s) 676, 746
BsrDI GCAATG 1 cut(s) 519
BsrI ACTGG 3 cut(s) 653, 1031, 1081
BssECI CCNNGG 5 cut(s) 555, 556, 647, 780, 1312
BssNI GRCGYC 2 cut(s) 509, 576
BssT1I CCWWGG 1 cut(s) 1312
Bst2UI CCWGG 1 cut(s) 563
Bst4CI ACNGT 2 cut(s) 533, 767
Bst6I CTCTTC 3 cut(s) 42, 318, 688
BstACI GRCGYC 2 cut(s) 509, 576
BstBI TTCGAA 1 cut(s) 179
BstC8I GCNNGC 3 cut(s) 214, 218, 869
BstDEI CTNAG 3 cut(s) 115, 165, 861
BstDSI CCRYGG 1 cut(s) 1312
BstENI CCTNNNNNAGG 1 cut(s) 566
BstF5I GGATG 4 cut(s) 55, 233, 1051, 1052
BstFNI CGCG 1 cut(s) 668
BstH2I RGCGCY 1 cut(s) 868
BstHHI GCGC 1 cut(s) 867
BstMAI GTCTC 4 cut(s) 437, 676, 746, 1054
BstMCI CGRYCG 1 cut(s) 1344
BstMWI GCNNNNNNNGC 4 cut(s) 209, 792, 1033, 1216
BstNI CCWGG 1 cut(s) 563
BstNSI RCATGY 1 cut(s) 475
BstSCI CCNGG 5 cut(s) 555, 556, 561, 646, 698
BstUI CGCG 1 cut(s) 668
BstV1I GCAGC 2 cut(s) 259, 1014
BstV2I GAAGAC 2 cut(s) 823, 1092
BstX2I RGATCY 3 cut(s) 1063, 1079, 1333
BstYI RGATCY 3 cut(s) 1063, 1079, 1333
Bsu15I ATCGAT 1 cut(s) 1344
BsuI GTATCC 2 cut(s) 895, 955
BsuRI GGCC 4 cut(s) 216, 561, 652, 779
BsuTUI ATCGAT 1 cut(s) 1344
BtgI CCRYGG 1 cut(s) 1312
BtgZI GCGATG 1 cut(s) 649
BtsCI GGATG 4 cut(s) 55, 233, 1051, 1052
BtsI GCAGTG 2 cut(s) 156, 1162
BtsIMutI CAGTG 5 cut(s) 156, 819, 1038, 1162, 1207
Cac8I GCNNGC 3 cut(s) 214, 218, 869
CfoI GCGC 1 cut(s) 867
Cfr13I GGNCC 5 cut(s) 131, 559, 650, 777, 838
Cfr9I CCCGGG 1 cut(s) 556
ClaI ATCGAT 1 cut(s) 1344
CpoI CGGWCCG 1 cut(s) 131
CseI GACGC 4 cut(s) 454, 498, 565, 592
Csp6I GTAC 5 cut(s) 93, 112, 280, 1169, 1367
CspI CGGWCCG 1 cut(s) 131
CviAII CATG 6 cut(s) 472, 635, 710, 806, 1277, 1313
CviQI GTAC 5 cut(s) 93, 112, 280, 1169, 1367
DdeI CTNAG 3 cut(s) 115, 165, 861
DraIII CACNNNGTG 1 cut(s) 322
Eam1104I CTCTTC 3 cut(s) 42, 318, 688
EarI CTCTTC 3 cut(s) 42, 318, 688
Eco130I CCWWGG 1 cut(s) 1312
Eco31I GGTCTC 2 cut(s) 676, 746
Eco47I GGWCC 2 cut(s) 131, 838
Eco57I CTGAAG 2 cut(s) 65, 1104
Eco88I CYCGRG 1 cut(s) 556
EcoNI CCTNNNNNAGG 1 cut(s) 566
EcoRII CCWGG 1 cut(s) 561
EcoT14I CCWWGG 1 cut(s) 1312
ErhI CCWWGG 1 cut(s) 1312
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 6 cut(s) 475, 638, 713, 809, 1280, 1316
FaqI GGGAC 2 cut(s) 743, 1284
FatI CATG 6 cut(s) 471, 634, 709, 805, 1276, 1312
FauNDI CATATG 1 cut(s) 771
FbaI TGATCA 1 cut(s) 1144
FblI GTMKAC 1 cut(s) 468
Fnu4HI GCNGC 5 cut(s) 204, 273, 500, 1028, 1356
FokI GGATG 4 cut(s) 62, 220, 1039, 1058
Fsp4HI GCNGC 5 cut(s) 204, 273, 500, 1028, 1356
FspBI CTAG 3 cut(s) 68, 428, 1112
GlaI GCGC 1 cut(s) 866
GluI GCNGC 5 cut(s) 204, 273, 500, 1028, 1356
GsaI CCCAGC 1 cut(s) 1362
HaeII RGCGCY 1 cut(s) 868
HaeIII GGCC 4 cut(s) 216, 561, 652, 779
HapII CCGG 6 cut(s) 129, 134, 537, 557, 647, 699
HgaI GACGC 4 cut(s) 454, 498, 565, 592
HhaI GCGC 1 cut(s) 867
Hin1I GRCGYC 2 cut(s) 509, 576
Hin1II CATG 6 cut(s) 475, 638, 713, 809, 1280, 1316
Hin6I GCGC 1 cut(s) 865
HinP1I GCGC 1 cut(s) 865
HinfI GANTC 5 cut(s) 176, 403, 731, 857, 989
HpaII CCGG 6 cut(s) 129, 134, 537, 557, 647, 699
HphI GGTGA 3 cut(s) 469, 649, 1133
Hpy166II GTNNAC 6 cut(s) 154, 280, 425, 469, 477, 1225
Hpy188I TCNGA 5 cut(s) 45, 690, 1057, 1068, 1084
Hpy188III TCNNGA 8 cut(s) 17, 23, 317, 537, 580, 1043, 1339, 1387
Hpy8I GTNNAC 6 cut(s) 154, 280, 425, 469, 477, 1225
Hpy99I CGWCG 1 cut(s) 1061
HpyAV CCTTC 9 cut(s) 40, 71, 254, 485, 513, 631, 687, 806, 1261
HpyCH4III ACNGT 2 cut(s) 533, 767
HpyCH4IV ACGT 2 cut(s) 487, 585
HpyCH4V TGCA 2 cut(s) 126, 149
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 792, 1033, 1216
HpyF3I CTNAG 3 cut(s) 115, 165, 861
HpySE526I ACGT 2 cut(s) 487, 585
Hsp92I GRCGYC 2 cut(s) 509, 576
Hsp92II CATG 6 cut(s) 475, 638, 713, 809, 1280, 1316
HspAI GCGC 1 cut(s) 865
Kpn2I TCCGGA 1 cut(s) 536
Ksp22I TGATCA 1 cut(s) 1144
LguI GCTCTTC 1 cut(s) 318
Lsp1109I GCAGC 2 cut(s) 259, 1014
LweI GCATC 2 cut(s) 795, 925
MaeI CTAG 3 cut(s) 68, 428, 1112
MaeII ACGT 2 cut(s) 487, 585
MaeIII GTNAC 7 cut(s) 371, 655, 817, 1019, 1072, 1121, 1327
MflI RGATCY 3 cut(s) 1063, 1079, 1333
MluCI AATT 6 cut(s) 723, 1172, 1244, 1306, 1318, 1349
MlyI GAGTC 2 cut(s) 397, 725
MmeI TCCRAC 1 cut(s) 1080
MroI TCCGGA 1 cut(s) 536
MslI CAYNNNNRTG 1 cut(s) 1281
MspA1I CMGCKG 1 cut(s) 1358
MspI CCGG 6 cut(s) 129, 134, 537, 557, 647, 699
MspR9I CCNGG 5 cut(s) 557, 558, 563, 648, 700
MvaI CCWGG 1 cut(s) 563
MvnI CGCG 1 cut(s) 668
MwoI GCNNNNNNNGC 4 cut(s) 209, 792, 1033, 1216
NciI CCSGG 4 cut(s) 557, 558, 648, 700
NcoI CCATGG 1 cut(s) 1312
NdeI CATATG 1 cut(s) 771
NlaIII CATG 6 cut(s) 475, 638, 713, 809, 1280, 1316
NlaIV GGNNCC 3 cut(s) 498, 651, 840
NmeAIII GCCGAG 1 cut(s) 805
NmuCI GTSAC 7 cut(s) 371, 655, 817, 1019, 1072, 1121, 1327
NspI RCATGY 1 cut(s) 475
NspV TTCGAA 1 cut(s) 179
PciI ACATGT 1 cut(s) 471
PciSI GCTCTTC 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 1337
PfeI GAWTC 3 cut(s) 176, 857, 989
PflFI GACNNNGTC 1 cut(s) 827
PkrI GCNGC 5 cut(s) 205, 274, 501, 1029, 1357
Ple19I CGATCG 1 cut(s) 1344
PleI GAGTC 2 cut(s) 397, 725
PpsI GAGTC 2 cut(s) 397, 725
PscI ACATGT 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 561
PspFI CCCAGC 1 cut(s) 1358
PspGI CCWGG 1 cut(s) 561
PspN4I GGNNCC 3 cut(s) 498, 651, 840
PspPI GGNCC 5 cut(s) 131, 559, 650, 777, 838
PsuI RGATCY 3 cut(s) 1063, 1079, 1333
PsyI GACNNNGTC 1 cut(s) 827
PvuI CGATCG 1 cut(s) 1344
RsaI GTAC 5 cut(s) 94, 113, 281, 1170, 1368
RsaNI GTAC 5 cut(s) 93, 112, 280, 1169, 1367
RseI CAYNNNNRTG 1 cut(s) 1281
Rsr2I CGGWCCG 1 cut(s) 131
RsrII CGGWCCG 1 cut(s) 131
SapI GCTCTTC 1 cut(s) 318
SatI GCNGC 5 cut(s) 204, 273, 500, 1028, 1356
Sau96I GGNCC 5 cut(s) 131, 559, 650, 777, 838
SchI GAGTC 2 cut(s) 397, 725
ScrFI CCNGG 5 cut(s) 557, 558, 563, 648, 700
SfaNI GCATC 2 cut(s) 795, 925
SfuI TTCGAA 1 cut(s) 179
SinI GGWCC 2 cut(s) 131, 838
SmaI CCCGGG 1 cut(s) 558
SmiMI CAYNNNNRTG 1 cut(s) 1281
SmlI CTYRAG 2 cut(s) 88, 1387
SmoI CTYRAG 2 cut(s) 88, 1387
SpeI ACTAGT 1 cut(s) 427
Sse9I AATT 6 cut(s) 723, 1172, 1244, 1306, 1318, 1349
SsiI CCGC 4 cut(s) 204, 500, 668, 1356
SspMI CTAG 3 cut(s) 68, 428, 1112
StyD4I CCNGG 5 cut(s) 555, 556, 561, 646, 698
StyI CCWWGG 1 cut(s) 1312
TaaI ACNGT 2 cut(s) 533, 767
TaiI ACGT 2 cut(s) 490, 588
TaqI TCGA 4 cut(s) 179, 482, 855, 1344
TasI AATT 6 cut(s) 723, 1172, 1244, 1306, 1318, 1349
TatI WGTACW 3 cut(s) 92, 111, 1168
TauI GCSGC 3 cut(s) 206, 502, 1358
TfiI GAWTC 3 cut(s) 176, 857, 989
TscAI CASTG 5 cut(s) 156, 826, 1038, 1162, 1207
TseFI GTSAC 7 cut(s) 371, 655, 817, 1019, 1072, 1121, 1327
TseI GCWGC 2 cut(s) 272, 1027
Tsp45I GTSAC 7 cut(s) 371, 655, 817, 1019, 1072, 1121, 1327
TspDTI ATGAA 3 cut(s) 365, 905, 1280
TspGWI ACGGA 2 cut(s) 1074, 1346
TspMI CCCGGG 1 cut(s) 556
TspRI CASTG 5 cut(s) 156, 826, 1038, 1162, 1207
Tth111I GACNNNGTC 1 cut(s) 827
VpaK11BI GGWCC 2 cut(s) 131, 838
XagI CCTNNNNNAGG 1 cut(s) 566
XapI RAATTY 2 cut(s) 723, 1244
XceI RCATGY 1 cut(s) 475
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XmaI CCCGGG 1 cut(s) 556
XmiI GTMKAC 1 cut(s) 468
XspI CTAG 3 cut(s) 68, 428, 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.